EY665459

Overview
NameEY665459
Unique NameEY665459
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length834
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665459 vs. ExPASy Swiss-Prot
Match: RCA1_YEAST (Mitochondrial respiratory chain complexes assembly protein RCA1 OS=Saccharomyces cerevisiae GN=RCA1 PE=1 SV=2)

HSP 1 Score: 188.348 bits (477), Expect = 3.505e-51
Identity = 96/147 (65.31%), Postives = 112/147 (76.19%), Query Frame = 2
Query:    8 VRFLKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAV-XXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRAWTF 445
            V FLK+P R+  +GA+IP+G +L GPPGTGKTLLAKA AGEAGVPF+ +SGSEFVEMFVGVGA+RVRDLFK A+ENAP IVF+DEIDA+            NDERE TLNQ+L EMDGF     ++V+A TNR DILD ALLR   F
Sbjct:  364 VSFLKEPSRYEKMGAKIPRGAILSGPPGTGKTLLAKATAGEAGVPFYFVSGSEFVEMFVGVGAARVRDLFKTARENAPSIVFIDEIDAIGKARQKGNFSGANDERENTLNQMLVEMDGFTPADHVVVLAGTNRPDILDKALLRPGRF 510          

HSP 2 Score: 35.4242 bits (80), Expect = 3.505e-51
Identity = 21/70 (30.00%), Postives = 35/70 (50.00%), Query Frame = 3
Query:  435 PGRFDRQVTVDVPDIRGKNR----DIKRFTGSNKKFD-ANGVSLMGKPEQTPGFQAADFATLKEQAGIFA 629
            PGRFDR + +D P++ G+       +     + + FD  N ++ +     TPGF  AD A +  +A + A
Sbjct:  507 PGRFDRHINIDKPELEGRKAIFAVHLHHLKLAGEIFDLKNRLAAL-----TPGFSGADIANVCNEAALIA 571          
BLAST of EY665459 vs. ExPASy Swiss-Prot
Match: RCA1_SCHPO (Mitochondrial respiratory chain complexes assembly protein rca1 OS=Schizosaccharomyces pombe GN=SPBC543.09 PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 3.507e-51
Identity = 93/147 (63.27%), Postives = 110/147 (74.83%), Query Frame = 2
Query:    8 VRFLKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAV-XXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRAWTF 445
            V+FLK P+ +  +GA+IP+G +L GPPGTGKTLLAKA AGEA VPF S+SGSEF+EMFVGVG SRVRDLF  A++NAPCI+F+DEIDA+            NDERE TLNQLL EMDGF  +  I+V A TNR D+LD ALLR   F
Sbjct:  312 VKFLKNPKFYERLGAKIPRGAILSGPPGTGKTLLAKATAGEANVPFLSVSGSEFLEMFVGVGPSRVRDLFATARKNAPCIIFIDEIDAIGKARGRGGQFGSNDERESTLNQLLVEMDGFTSSEHIVVFAGTNRPDVLDPALLRPGRF 458          

HSP 2 Score: 39.2762 bits (90), Expect = 3.507e-51
Identity = 24/67 (35.82%), Postives = 34/67 (50.75%), Query Frame = 3
Query:  435 PGRFDRQVTVDVPDIRGKNRDIKRFTGSNKKFDANGVSLMGK--PEQTPGFQAADFATLKEQAGIFA 629
            PGRFDRQ+T+D PDI G+ +  K      K   A+ + L+ K     T GF  AD   +  +  + A
Sbjct:  455 PGRFDRQITIDRPDIGGREQIFKVHLKHIKA--ADNIDLIAKRLAVLTSGFTGADIMNVCNEGALIA 519          
BLAST of EY665459 vs. ExPASy Swiss-Prot
Match: AFG32_MOUSE (AFG3-like protein 2 OS=Mus musculus GN=Afg3l2 PE=1 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 7.765e-51
Identity = 90/146 (61.64%), Postives = 109/146 (74.66%), Query Frame = 2
Query:    8 VRFLKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRAWTF 445
            V FLK P+++  +GA+IPKG +L GPPGTGKTLLAKA AGEA VPF ++SGSEF+EMFVGVG +RVRDLF  A++NAPCI+F+DEIDAV             E+E TLNQLL EMDGF   T ++++A TNR DILD ALLR   F
Sbjct:  323 VNFLKNPKQYQDLGAKIPKGAILTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPARVRDLFALARKNAPCILFIDEIDAVGRKRGRGNFGGQSEQENTLNQLLVEMDGFNTTTNVVILAGTNRPDILDPALLRPGRF 468          

HSP 2 Score: 37.7354 bits (86), Expect = 7.765e-51
Identity = 23/67 (34.33%), Postives = 32/67 (47.76%), Query Frame = 3
Query:  435 PGRFDRQVTVDVPDIRGKNRDIKRFTGSNKKFDANGVSLMGK--PEQTPGFQAADFATLKEQAGIFA 629
            PGRFDRQ+ +  PDI+G+    K      K   A     + +     TPGF  AD A +  +A + A
Sbjct:  465 PGRFDRQIFIGPPDIKGRASIFKVHLRPLKLDSALEKDKLARKLASLTPGFSGADVANVCNEAALIA 531          
BLAST of EY665459 vs. ExPASy Swiss-Prot
Match: YMEL1_HUMAN (ATP-dependent metalloprotease YME1L1 OS=Homo sapiens GN=YME1L1 PE=1 SV=2)

HSP 1 Score: 178.333 bits (451), Expect = 7.767e-51
Identity = 86/146 (58.90%), Postives = 112/146 (76.71%), Query Frame = 2
Query:    8 VRFLKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRAWTF 445
            V FLK P++FT +G ++PKG+LLVGPPGTGKTLLA+A+AGEA VPF+  SGSEF EMFVGVGASR+R+LF++AK NAPC++F+DE+D+V           +    QT+NQLL EMDGF+ N G+I+I ATN  + LD+AL+R   F
Sbjct:  355 VEFLKNPQKFTILGGKLPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSV--GGKRIESPMHPYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRF 498          

HSP 2 Score: 44.2838 bits (103), Expect = 7.767e-51
Identity = 25/77 (32.47%), Postives = 40/77 (51.95%), Query Frame = 3
Query:  435 PGRFDRQVTVDVPDIRGKNRDIKRFTGSNKKFDANGVSLMGKPEQTPGFQAADFATLKEQAGIFACDDGRQVAIVFE 665
            PGRFD QVTV  PD++G+   +K +    K   +    ++ +   T GF  A+   L  QA + A  DG+++  + E
Sbjct:  495 PGRFDMQVTVPRPDVKGRTEILKWYLNKIKFDQSVDPEIIAR--GTVGFSGAELENLVNQAALKAAVDGKEMVTMKE 569          
BLAST of EY665459 vs. ExPASy Swiss-Prot
Match: YMEL1_MOUSE (ATP-dependent metalloprotease YME1L1 OS=Mus musculus GN=Yme1l1 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 7.773e-51
Identity = 86/146 (58.90%), Postives = 112/146 (76.71%), Query Frame = 2
Query:    8 VRFLKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRAWTF 445
            V FLK P++FT +G ++PKG+LLVGPPGTGKTLLA+A+AGEA VPF+  SGSEF EMFVGVGASR+R+LF++AK NAPC++F+DE+D+V           +    QT+NQLL EMDGF+ N G+I+I ATN  + LD+AL+R   F
Sbjct:  297 VEFLKNPQKFTVLGGKLPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSV--GGKRIESPMHPYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRF 440          

HSP 2 Score: 43.8986 bits (102), Expect = 7.773e-51
Identity = 28/77 (36.36%), Postives = 40/77 (51.95%), Query Frame = 3
Query:  435 PGRFDRQVTVDVPDIRGKNRDIKRFTGSNKKFDANGVSLMGKPEQTPGFQAADFATLKEQAGIFACDDGRQVAIVFE 665
            PGRFD QVTV  PD++G+   +K +  +  KFD   V        T GF  A+   L  QA + A  DG+++  + E
Sbjct:  437 PGRFDMQVTVPRPDVKGRTEILKWYL-NKIKFD-KSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKEMVTMKE 511          
BLAST of EY665459 vs. ExPASy Swiss-Prot
Match: FTSH4_ORYSJ (Cell division protease ftsH homolog 4, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH4 PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.013e-50
Identity = 91/146 (62.33%), Postives = 108/146 (73.97%), Query Frame = 2
Query:    8 VRFLKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRAWTF 445
            V +L+ P+RFT +G ++PKGVLLVGPPGTGKT+LA+A+AGEAGVPFFS SGSEF EMFVGVGA RVRDLF  AK+ +PCI+F+DEIDA+                 TLNQLL E+DGF+ N GIIVIAATN    LD AL+R   F
Sbjct:  239 VHYLRDPKRFTHLGGKLPKGVLLVGPPGTGKTMLARAVAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFAAAKKRSPCIIFMDEIDAI---GGSRNPKDQQYMRMTLNQLLVELDGFKQNEGIIVIAATNFPQSLDKALVRPGRF 381          

HSP 2 Score: 45.0542 bits (105), Expect = 1.013e-50
Identity = 26/69 (37.68%), Postives = 36/69 (52.17%), Query Frame = 3
Query:  435 PGRFDRQVTVDVPDIRGKNRDIKRFTGSNKKFDANGVSLMGKPEQTPGFQAADFATLKEQAGIFACDDG 641
            PGRFDR + V  PD+ G+ + ++  +   K   ++ V LM     TPGF  AD A L   A + A  DG
Sbjct:  378 PGRFDRHIVVPNPDVEGRRQILE--SHMLKVLKSDDVDLMIIARGTPGFSGADLANLVNVAALKAAMDG 444          
BLAST of EY665459 vs. ExPASy Swiss-Prot
Match: AFG32_BOVIN (AFG3-like protein 2 OS=Bos taurus GN=AFG3L2 PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 1.720e-50
Identity = 89/146 (60.96%), Postives = 109/146 (74.66%), Query Frame = 2
Query:    8 VRFLKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRAWTF 445
            V FLK P+++  +GA+IPKG +L GPPGTGKTLLAKA AGEA VPF ++SGSEF+EMFVGVG +RVRDLF  A++NAPCI+F+DEIDAV             E+E TLNQLL EMDGF   T ++++A TNR DILD AL+R   F
Sbjct:  325 VNFLKNPKQYQDLGAKIPKGAILTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPARVRDLFALARKNAPCILFIDEIDAVGRKRGRGNFGGQSEQENTLNQLLVEMDGFNTTTNVVILAGTNRPDILDPALMRPGRF 470          

HSP 2 Score: 37.3502 bits (85), Expect = 1.720e-50
Identity = 24/72 (33.33%), Postives = 37/72 (51.39%), Query Frame = 3
Query:  435 PGRFDRQVTVDVPDIRGKN-------RDIKRFTGSNKKFDANGVSLMGKPEQTPGFQAADFATLKEQAGIFA 629
            PGRFDRQ+ +  PDI+G+        R +K  +   K+  A  ++ +     TPGF  AD A +  +A + A
Sbjct:  467 PGRFDRQIFIGPPDIKGRASIFKVHLRPLKLDSTLEKEKLARKLASL-----TPGFSGADVANVCNEAALIA 533          
BLAST of EY665459 vs. ExPASy Swiss-Prot
Match: AFG32_HUMAN (AFG3-like protein 2 OS=Homo sapiens GN=AFG3L2 PE=1 SV=2)

HSP 1 Score: 184.882 bits (468), Expect = 1.720e-50
Identity = 90/146 (61.64%), Postives = 109/146 (74.66%), Query Frame = 2
Query:    8 VRFLKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRAWTF 445
            V FLK P+++  +GA+IPKG +L GPPGTGKTLLAKA AGEA VPF ++SGSEF+EMFVGVG +RVRDLF  A++NAPCI+F+DEIDAV             E+E TLNQLL EMDGF   T ++++A TNR DILD ALLR   F
Sbjct:  324 VNFLKNPKQYQDLGAKIPKGAILTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPARVRDLFALARKNAPCILFIDEIDAVGRKRGRGNFGGQSEQENTLNQLLVEMDGFNTTTNVVILAGTNRPDILDPALLRPGRF 469          

HSP 2 Score: 36.5798 bits (83), Expect = 1.720e-50
Identity = 24/72 (33.33%), Postives = 36/72 (50.00%), Query Frame = 3
Query:  435 PGRFDRQVTVDVPDIRGKN-------RDIKRFTGSNKKFDANGVSLMGKPEQTPGFQAADFATLKEQAGIFA 629
            PGRFDRQ+ +  PDI+G+        R +K  +   K   A  ++ +     TPGF  AD A +  +A + A
Sbjct:  466 PGRFDRQIFIGPPDIKGRASIFKVHLRPLKLDSTLEKDKLARKLASL-----TPGFSGADVANVCNEAALIA 532          
BLAST of EY665459 vs. ExPASy Swiss-Prot
Match: FTSH9_ORYSJ (Cell division protease ftsH homolog 9, chloroplastic/mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH9 PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 3.809e-50
Identity = 93/146 (63.70%), Postives = 107/146 (73.29%), Query Frame = 2
Query:    8 VRFLKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRAWTF 445
            V +LK P +FT +G ++PKG+LL G PGTGKTLLAKAIAGEAGVPFF  +GSEF EMFVGVGA RVR LF+ AK+ APCIVF+DEIDAV               ++TL+QLL EMDGFE N GIIV+AATN  DILD AL R   F
Sbjct:  344 VEYLKNPSKFTRLGGKLPKGILLTGSPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIVFIDEIDAV----GSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIIVMAATNLPDILDPALTRPGRF 485          

HSP 2 Score: 43.8986 bits (102), Expect = 3.809e-50
Identity = 25/69 (36.23%), Postives = 35/69 (50.72%), Query Frame = 3
Query:  435 PGRFDRQVTVDVPDIRGKNRDIKRFTGSNKKFDANGVSLMGKPEQTPGFQAADFATLKEQAGIFACDDG 641
            PGRFDR + V  PD+RG+   ++ +     K  ++ V +      TPGF  AD A L   A I A  +G
Sbjct:  482 PGRFDRHIVVPNPDVRGRQEILELYL--QDKPVSSDVDVNAIARSTPGFNGADLANLVNIAAIKAAVEG 548          
BLAST of EY665459 vs. ExPASy Swiss-Prot
Match: AFG3_YEAST (Mitochondrial respiratory chain complexes assembly protein AFG3 OS=Saccharomyces cerevisiae GN=AFG3 PE=1 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 3.810e-50
Identity = 92/148 (62.16%), Postives = 111/148 (75.00%), Query Frame = 2
Query:    8 VRFLKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAV--XXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRAWTF 445
            V FLK P ++T +GA+IP+G +L GPPGTGKTLLAKA AGEA VPF S+SGSEFVEMFVGVGASRVRDLF +A+  AP I+F+DEIDA+             NDERE TLNQLL EMDGF  +  ++V+A TNR D+LD+AL+R   F
Sbjct:  304 VHFLKNPGKYTKLGAKIPRGAILSGPPGTGKTLLAKATAGEANVPFLSVSGSEFVEMFVGVGASRVRDLFTQARSMAPSIIFIDEIDAIGKERGKGGALGGANDEREATLNQLLVEMDGFTTSDQVVVLAGTNRPDVLDNALMRPGRF 451          

HSP 2 Score: 38.1206 bits (87), Expect = 3.810e-50
Identity = 25/70 (35.71%), Postives = 34/70 (48.57%), Query Frame = 3
Query:  435 PGRFDRQVTVDVPDIRGKNR----DIKRFTGSNKKFDANGVSLMGK-PEQTPGFQAADFATLKEQAGIFA 629
            PGRFDR + +D PD+ G+ +     +KR        D    +L GK    TPGF  AD A    +A + A
Sbjct:  448 PGRFDRHIQIDSPDVNGRQQIYLVHLKRLNLDPLLTDDMN-NLSGKLATLTPGFTGADIANACNEAALIA 516          
The following BLAST results are available for this feature:
BLAST of EY665459 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 380
Match NameE-valueIdentityDescription
RCA1_YEAST3.505e-5165.31Mitochondrial respiratory chain complexes assembly... [more]
RCA1_SCHPO3.507e-5163.27Mitochondrial respiratory chain complexes assembly... [more]
AFG32_MOUSE7.765e-5161.64AFG3-like protein 2 OS=Mus musculus GN=Afg3l2 PE=1... [more]
YMEL1_HUMAN7.767e-5158.90ATP-dependent metalloprotease YME1L1 OS=Homo sapie... [more]
YMEL1_MOUSE7.773e-5158.90ATP-dependent metalloprotease YME1L1 OS=Mus muscul... [more]
FTSH4_ORYSJ1.013e-5062.33Cell division protease ftsH homolog 4, mitochondri... [more]
AFG32_BOVIN1.720e-5060.96AFG3-like protein 2 OS=Bos taurus GN=AFG3L2 PE=2 S... [more]
AFG32_HUMAN1.720e-5061.64AFG3-like protein 2 OS=Homo sapiens GN=AFG3L2 PE=1... [more]
FTSH9_ORYSJ3.809e-5063.70Cell division protease ftsH homolog 9, chloroplast... [more]
AFG3_YEAST3.810e-5062.16Mitochondrial respiratory chain complexes assembly... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-002-D01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665459 ID=EY665459; Name=EY665459; organism=Citrus sinensis; type=EST; length=834bp
CCCACGCGTCCGGTTCCTTAAGAAGCCTGAGAGATTTACAGCTGTTGGAG
CTCGTATTCCAAAGGGTGTTCTTCTCGTTGGTCCTCCAGGAACTGGGAAG
ACTCTTCTTGCCAAGGCAATTGCTGGTGAAGCCGGTGTTCCATTTTTCTC
CATATCAGGTTCTGAGTTTGTTGAGATGTTTGTTGGTGTCGGTGCATCTA
GAGTCCGAGATCTTTTCAAGAAGGCCAAAGAGAATGCTCCTTGCATTGTA
TTTGTGGATGAAATTGATGCCGTTGGAAGACAAAGAGGAACTGGAATTGG
AGGAGGGAATGATGAAAGAGAGCAGACCCTTAACCAGCTTTTGACAGAAA
TGGATGGTTTTGAGGGTAATACTGGTATCATTGTGATTGCTGCAACTAAC
AGGGCGGACATTCTTGATTCTGCCTTATTGAGGGCCTGGACGTTTTGATA
GACAGGTTACTGTTGATGTTCCTGACATTCGAGGAAAGAACAGAGATATT
AAAAGGTTCACGGGTAGCAACAAAAAATTTGATGCAAATGGTGTCTCCTT
GATGGGAAAGCCAGAACAAACCCCTGGGTTCCAGGCTGCTGACTTTGCAA
CCCTCAAAGAACAGGCAGGCATCTTTGCGTGCGACGACGGGCGGCAAGTG
GCTATTGTATTTGAAAAAAAATGACCAATACAAGTGAAACGCAATGTTCA
TTCACACCCAACACAATCACCCTCACCAAACACGGGCAGAAACGACTGAT
AGTCGGAACGCACAAACACGCGCCCGAGAAAAAGCAAGCACCCGAAACCT
CGGAAACAATAATGCCATCATTACAACTCAGACC
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