EY665459

Overview
NameEY665459
Unique NameEY665459
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length834
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665459 vs. ExPASy Swiss-Prot
Match: FTSHB_ARATH (Cell division protease ftsH homolog 11, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=FTSH11 PE=1 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 6.469e-50
Identity = 92/146 (63.01%), Postives = 107/146 (73.29%), Query Frame = 2
Query:    8 VRFLKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRAWTF 445
            V +LK P +FT +G ++PKG+LL G PGTGKTLLAKAIAGEAGVPFF  +GSEF EMFVGVGA RVR LF+ AK+ APCI+F+DEIDAV               ++TL+QLL EMDGFE N GIIV+AATN  DILD AL R   F
Sbjct:  378 VEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAV----GSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIIVMAATNLPDILDPALTRPGRF 519          

HSP 2 Score: 43.5134 bits (101), Expect = 6.469e-50
Identity = 25/71 (35.21%), Postives = 35/71 (49.30%), Query Frame = 3
Query:  435 PGRFDRQVTVDVPDIRGKNRDIKRFTGSNKKFDANGVSLMGKPEQTPGFQAADFATLKEQAGIFACDDGRQ 647
            PGRFDR + V  PD+RG+   ++ +     K  +  V +      TPGF  AD A L   A I A  +G +
Sbjct:  516 PGRFDRHIVVPSPDVRGREEILELYL--QGKPMSEDVDVKAIARGTPGFNGADLANLVNIAAIKAAVEGAE 584          
BLAST of EY665459 vs. ExPASy Swiss-Prot
Match: FTSH_MYCPU (Cell division protease ftsH homolog OS=Mycoplasma pulmonis GN=ftsH PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 6.475e-50
Identity = 89/146 (60.96%), Postives = 110/146 (75.34%), Query Frame = 2
Query:    8 VRFLKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRAWTF 445
            V +LK P+++ A GAR PKG+LL GPPGTGKTLLAKA AGEA VPFF IS S FVE++VG+GA RVR++FK+A++ AP I+F+DE+DAV           NDEREQTLNQ+L EMDG   N GI+++ ATNR D+LD ALLR   F
Sbjct:  228 VDYLKNPKKYAAAGARFPKGILLGGPPGTGKTLLAKATAGEANVPFFFISASSFVELYVGLGAKRVREMFKEARKLAPAIIFIDELDAVGRSRGSGIGGGNDEREQTLNQILVEMDGINENAGILIMGATNRTDVLDPALLRPGRF 373          

HSP 2 Score: 35.4242 bits (80), Expect = 6.475e-50
Identity = 21/74 (28.38%), Postives = 36/74 (48.65%), Query Frame = 3
Query:  435 PGRFDRQVTVDVPDIRGKNRDIKRFTGSNKKFDANGVSLMGKPEQTPGFQAADFATLKEQAGIFACDDGRQVAI 656
            PGRFDR +TV +PDI+ +   +K    S  K  +  +      ++TPG+  A    +  +A + +  +   V I
Sbjct:  370 PGRFDRIITVGLPDIKEREEILK--LHSKGKRLSKEIKFDKIAKRTPGYSGAQLENVINEASLLSVREKTDVII 441          
BLAST of EY665459 vs. ExPASy Swiss-Prot
Match: YMEL1_RAT (ATP-dependent metalloprotease YME1L1 OS=Rattus norvegicus GN=Yme1l1 PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 8.441e-50
Identity = 85/146 (58.22%), Postives = 111/146 (76.03%), Query Frame = 2
Query:    8 VRFLKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRAWTF 445
            V FLK P++FT +G ++PKG+LLVGPPGTGKTLLA+A+AGEA VPF+  SGSEF EMFVGVGASR+R+LF++AK NAPC++F+DE+D+V           +    QT+ QLL EMDGF+ N G+I+I ATN  + LD+AL+R   F
Sbjct:  297 VEFLKNPQKFTVLGGKLPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSV--GGKRIEFPMHPYSRQTIIQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRF 440          

HSP 2 Score: 43.8986 bits (102), Expect = 8.441e-50
Identity = 28/77 (36.36%), Postives = 40/77 (51.95%), Query Frame = 3
Query:  435 PGRFDRQVTVDVPDIRGKNRDIKRFTGSNKKFDANGVSLMGKPEQTPGFQAADFATLKEQAGIFACDDGRQVAIVFE 665
            PGRFD QVTV  PD++G+   +K +  +  KFD   V        T GF  A+   L  QA + A  DG+++  + E
Sbjct:  437 PGRFDMQVTVPRPDVKGRTEILKWYL-NKIKFD-KSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKEMVTMKE 511          
BLAST of EY665459 vs. ExPASy Swiss-Prot
Match: AFG31_MOUSE (AFG3-like protein 1 OS=Mus musculus GN=Afg3l1 PE=2 SV=2)

HSP 1 Score: 179.874 bits (455), Expect = 1.099e-49
Identity = 85/146 (58.22%), Postives = 109/146 (74.66%), Query Frame = 2
Query:    8 VRFLKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRAWTF 445
            V FLK P+++  +GA+IPKG +L GPPGTGKTLLAKA AGEA VPF +++GSEF+EMFVGVG +RVRD+F  A+++APCI+F+DEIDA+             E+E TLNQ+L EMDGF  +T ++V+A TNR DILD AL R   F
Sbjct:  316 VNFLKNPKQYQDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVNGSEFLEMFVGVGPARVRDMFAMARKHAPCILFIDEIDAIGRKRGRGHLGGQSEQENTLNQMLVEMDGFNSSTNVVVLAGTNRPDILDPALTRPGRF 461          

HSP 2 Score: 38.891 bits (89), Expect = 1.099e-49
Identity = 26/71 (36.62%), Postives = 36/71 (50.70%), Query Frame = 3
Query:  435 PGRFDRQVTVDVPDIRGKNRDIK------RFTGSNKKFDANGVSLMGKPEQTPGFQAADFATLKEQAGIFA 629
            PGRFDRQ+ +  PDI+G++   K      +  GS  K DA    L      TPGF  AD + +  +A + A
Sbjct:  458 PGRFDRQIYIGPPDIKGRSSIFKVHLRPLKLDGSLSK-DALSRKLAA---LTPGFTGADISNVCNEAALIA 524          
BLAST of EY665459 vs. ExPASy Swiss-Prot
Match: YME1_CAEEL (Protein YME1 homolog OS=Caenorhabditis elegans GN=ymel-1 PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.297e-47
Identity = 93/146 (63.70%), Postives = 108/146 (73.97%), Query Frame = 2
Query:    8 VRFLKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRAWTF 445
            V +LK PE+++ +G R+PKGVLLVGPPGTGKTLLA+AIAGEA VPFF  +GSEF E+ VG GA RVRDLF KAK  APCI+F+DEID+V           +    QT+NQLL+EMDGF  N GIIVIAATNR D LD ALLR   F
Sbjct:  217 VDYLKDPEKYSRLGGRLPKGVLLVGPPGTGKTLLARAIAGEAQVPFFHTAGSEFDEVLVGQGARRVRDLFDKAKARAPCIIFIDEIDSV--GSKRVSNSIHPYANQTINQLLSEMDGFTRNEGIIVIAATNRVDDLDKALLRPGRF 360          

HSP 2 Score: 35.4242 bits (80), Expect = 1.297e-47
Identity = 25/68 (36.76%), Postives = 34/68 (50.00%), Query Frame = 3
Query:  435 PGRFDRQVTVDVPDIRGKNRDIKRFTGSNKKFDANGVSLMGKPEQTPGFQAADFATLKEQAGIFACDD 638
            PGRFD +VTV  PD+ G+  DI  F  S K   + G+      + + GF  AD   +  QA + A  D
Sbjct:  357 PGRFDVRVTVPKPDLAGR-VDIFNFYLS-KIVHSGGIDPKVLAKGSTGFTGADIENMVNQAALKAATD 422          
BLAST of EY665459 vs. ExPASy Swiss-Prot
Match: SPG7_HUMAN (Paraplegin OS=Homo sapiens GN=SPG7 PE=1 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 1.078e-46
Identity = 86/143 (60.14%), Postives = 106/143 (74.13%), Query Frame = 2
Query:    8 VRFLKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAV-XXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLR 433
            V +LK PERF  +GA++PKG LL+GPPG GKTLLAKA+A EA VPF +++G EFVE+  G+GA+RVR LFK+A+  APCIV++DEIDAV            N E EQTLNQLL EMDG      +IV+A+TNRADILD AL+R
Sbjct:  325 VDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGPEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMR 467          

HSP 2 Score: 40.817 bits (94), Expect = 1.078e-46
Identity = 21/69 (30.43%), Postives = 34/69 (49.28%), Query Frame = 3
Query:  435 PGRFDRQVTVDVPDIRGKNRDIKRFTGSNKKFDANGVSLMGKPEQTPGFQAADFATLKEQAGIFACDDG 641
            PGR DR V +D+P ++ +    ++   S K   ++        E TPGF  AD A +  +A + A  +G
Sbjct:  468 PGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREG 536          
BLAST of EY665459 vs. ExPASy Swiss-Prot
Match: SPG7_MOUSE (Paraplegin OS=Mus musculus GN=Spg7 PE=1 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 3.110e-46
Identity = 85/143 (59.44%), Postives = 107/143 (74.83%), Query Frame = 2
Query:    8 VRFLKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAV-XXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLR 433
            V +LK PERF  +GA++PKG LL+GPPG GKTLLAKA+A EA VPF +++G EFVE+  G+GA+RVR LFK+A+  APCIV++DEIDAV            N E EQTLNQLL EMDG      +IV+A+TNRAD+LD+AL+R
Sbjct:  325 VDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGPEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTSMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADVLDNALMR 467          

HSP 2 Score: 39.2762 bits (90), Expect = 3.110e-46
Identity = 20/69 (28.99%), Postives = 32/69 (46.38%), Query Frame = 3
Query:  435 PGRFDRQVTVDVPDIRGKNRDIKRFTGSNKKFDANGVSLMGKPEQTPGFQAADFATLKEQAGIFACDDG 641
            PGR DR V +D+P ++ +    ++     K    +        E TPGF  AD A +  +A + A  +G
Sbjct:  468 PGRLDRHVFIDLPTLQERREIFEQHLKGLKLTQPSSFYSQRLAELTPGFSGADIANICNEAALHAAREG 536          
BLAST of EY665459 vs. ExPASy Swiss-Prot
Match: YME1_YEAST (Protein YME1 OS=Saccharomyces cerevisiae GN=YME1 PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 5.284e-46
Identity = 81/146 (55.48%), Postives = 103/146 (70.55%), Query Frame = 2
Query:    8 VRFLKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRAWTF 445
            V FLK P ++ ++G ++PKGVLL GPPGTGKTLLA+A AGEAGV FF +SGSEF E++VGVGA R+RDLF +A+  AP I+F+DE+DA+               +QTLNQLL E+DGF   +GII+I ATN  + LD AL R   F
Sbjct:  297 VDFLKDPTKYESLGGKLPKGVLLTGPPGTGKTLLARATAGEAGVDFFFMSGSEFDEVYVGVGAKRIRDLFAQARSRAPAIIFIDELDAIGGKRNPKDQAY---AKQTLNQLLVELDGFSQTSGIIIIGATNFPEALDKALTRPGRF 439          

HSP 2 Score: 46.595 bits (109), Expect = 5.284e-46
Identity = 24/66 (36.36%), Postives = 36/66 (54.55%), Query Frame = 3
Query:  435 PGRFDRQVTVDVPDIRGKNRDIKRFTGSNKKFDANGVSLMGKPEQTPGFQAADFATLKEQAGIFAC 632
            PGRFD+ V VD+PD+RG+   +K         D    +++ +   TPG   A+ A L  QA ++AC
Sbjct:  436 PGRFDKVVNVDLPDVRGRADILKHHMKKITLADNVDPTIIAR--GTPGLSGAELANLVNQAAVYAC 499          
BLAST of EY665459 vs. ExPASy Swiss-Prot
Match: SPG7_RAT (Paraplegin OS=Rattus norvegicus GN=Spg7 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.488e-42
Identity = 85/143 (59.44%), Postives = 107/143 (74.83%), Query Frame = 2
Query:    8 VRFLKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAV-XXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLR 433
            V +LK PERF  +GA++PKG LL+GPPG GKTLLAKA+A EA VPF +++G EFVE+  G+GA+RVR LFK+A+  APCIV++DEIDAV            N E EQTLNQLL EMDG      +IV+A+TNRAD+LD+AL+R
Sbjct:  325 VDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGPEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTSMSGFSNTEEEQTLNQLLVEMDGMGTADHVIVLASTNRADVLDNALMR 467          

HSP 2 Score: 27.7202 bits (60), Expect = 1.488e-42
Identity = 14/49 (28.57%), Postives = 22/49 (44.90%), Query Frame = 3
Query:  435 PGRFDRQVTVDVPDIRGKNRDIKRFTGSNKKFDANGVSLMGKPEQTPGF 581
            PGR DR V +D+P ++ +    ++     K    +        E TPGF
Sbjct:  468 PGRLDRHVFIDLPTLQERREIFEQHLKGLKLTQPSSFYSQRLAELTPGF 516          
BLAST of EY665459 vs. ExPASy Swiss-Prot
Match: YME1_SCHMA (Protein YME1 homolog OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 7.261e-42
Identity = 85/146 (58.22%), Postives = 107/146 (73.29%), Query Frame = 2
Query:    8 VRFLKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRAWTF 445
            V FL+ PE+F  +GA++PKGVLLVGPPG GKTLLAKA++GEA VPF   SGS F E+ VG+GASR+R LF  AK+N+PC+VF+DEID+V           +    QT+NQLL EMDGF+   GIIV+ ATN+A++LD ALLR   F
Sbjct:  182 VEFLRNPEKFNQIGAKLPKGVLLVGPPGVGKTLLAKAVSGEAQVPFLYASGSSFDEVLVGLGASRIRQLFTTAKQNSPCLVFIDEIDSV--GGNRTFSPHHPFANQTINQLLAEMDGFQSKEGIIVLGATNQAEVLDKALLRPGRF 325          
The following BLAST results are available for this feature:
BLAST of EY665459 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 380
Match NameE-valueIdentityDescription
FTSHB_ARATH6.469e-5063.01Cell division protease ftsH homolog 11, chloroplas... [more]
FTSH_MYCPU6.475e-5060.96Cell division protease ftsH homolog OS=Mycoplasma ... [more]
YMEL1_RAT8.441e-5058.22ATP-dependent metalloprotease YME1L1 OS=Rattus nor... [more]
AFG31_MOUSE1.099e-4958.22AFG3-like protein 1 OS=Mus musculus GN=Afg3l1 PE=2... [more]
YME1_CAEEL1.297e-4763.70Protein YME1 homolog OS=Caenorhabditis elegans GN=... [more]
SPG7_HUMAN1.078e-4660.14Paraplegin OS=Homo sapiens GN=SPG7 PE=1 SV=2[more]
SPG7_MOUSE3.110e-4659.44Paraplegin OS=Mus musculus GN=Spg7 PE=1 SV=1[more]
YME1_YEAST5.284e-4655.48Protein YME1 OS=Saccharomyces cerevisiae GN=YME1 P... [more]
SPG7_RAT1.488e-4259.44Paraplegin OS=Rattus norvegicus GN=Spg7 PE=2 SV=1[more]
YME1_SCHMA7.261e-4258.22Protein YME1 homolog OS=Schistosoma mansoni PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-002-D01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665459 ID=EY665459; Name=EY665459; organism=Citrus sinensis; type=EST; length=834bp
CCCACGCGTCCGGTTCCTTAAGAAGCCTGAGAGATTTACAGCTGTTGGAG
CTCGTATTCCAAAGGGTGTTCTTCTCGTTGGTCCTCCAGGAACTGGGAAG
ACTCTTCTTGCCAAGGCAATTGCTGGTGAAGCCGGTGTTCCATTTTTCTC
CATATCAGGTTCTGAGTTTGTTGAGATGTTTGTTGGTGTCGGTGCATCTA
GAGTCCGAGATCTTTTCAAGAAGGCCAAAGAGAATGCTCCTTGCATTGTA
TTTGTGGATGAAATTGATGCCGTTGGAAGACAAAGAGGAACTGGAATTGG
AGGAGGGAATGATGAAAGAGAGCAGACCCTTAACCAGCTTTTGACAGAAA
TGGATGGTTTTGAGGGTAATACTGGTATCATTGTGATTGCTGCAACTAAC
AGGGCGGACATTCTTGATTCTGCCTTATTGAGGGCCTGGACGTTTTGATA
GACAGGTTACTGTTGATGTTCCTGACATTCGAGGAAAGAACAGAGATATT
AAAAGGTTCACGGGTAGCAACAAAAAATTTGATGCAAATGGTGTCTCCTT
GATGGGAAAGCCAGAACAAACCCCTGGGTTCCAGGCTGCTGACTTTGCAA
CCCTCAAAGAACAGGCAGGCATCTTTGCGTGCGACGACGGGCGGCAAGTG
GCTATTGTATTTGAAAAAAAATGACCAATACAAGTGAAACGCAATGTTCA
TTCACACCCAACACAATCACCCTCACCAAACACGGGCAGAAACGACTGAT
AGTCGGAACGCACAAACACGCGCCCGAGAAAAAGCAAGCACCCGAAACCT
CGGAAACAATAATGCCATCATTACAACTCAGACC
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