EY665416

Overview
NameEY665416
Unique NameEY665416
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1026
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665416 vs. ExPASy Swiss-Prot
Match: FERA_ALOMA (Ferredoxin-A OS=Alocasia macrorrhiza PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.407e-24
Identity = 49/85 (57.65%), Postives = 60/85 (70.59%), Query Frame = 2
Query:  206 RGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVXXXXXXXXXXXXIGERFCLTCAAYPTSDVTIETHKEEEL 460
            +G++E +CPDD +ILD AEE G+DLPYSCRAG+CSSC GKV  G V            + + + LTC A+PTSDV IETHKEEEL
Sbjct:   11 QGQQEFDCPDDVYILDQAEEEGIDLPYSCRAGSCSSCAGKVKQGEVDQSDGSFLDDEQMEQGWVLTCVAFPTSDVVIETHKEEEL 95          

HSP 2 Score: 26.9498 bits (58), Expect = 3.407e-24
Identity = 10/13 (76.92%), Postives = 13/13 (100.00%), Query Frame = 1
Query:  175 ATYKVKLITPEGR 213
            ATYKVKL+TP+G+
Sbjct:    1 ATYKVKLVTPQGQ 13          
BLAST of EY665416 vs. ExPASy Swiss-Prot
Match: FER_SAMNI (Ferredoxin OS=Sambucus nigra PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.435e-24
Identity = 50/84 (59.52%), Postives = 60/84 (71.43%), Query Frame = 2
Query:  209 GEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVXXXXXXXXXXXXIGERFCLTCAAYPTSDVTIETHKEEEL 460
            G +E  CPDD +IL+ AEE G+D+PYSCRAG+CSSC GK+V+G+V            I E + LTC AYP SDVTIETHKEEEL
Sbjct:   12 GPQEFECPDDVYILEHAEELGIDIPYSCRAGSCSSCAGKLVAGSVDQSDQSFLDDEQIEEGWVLTCVAYPKSDVTIETHKEEEL 95          

HSP 2 Score: 25.409 bits (54), Expect = 4.435e-24
Identity = 10/12 (83.33%), Postives = 12/12 (100.00%), Query Frame = 1
Query:  175 ATYKVKLITPEG 210
            A+YKVKLITP+G
Sbjct:    1 ASYKVKLITPDG 12          
BLAST of EY665416 vs. ExPASy Swiss-Prot
Match: FER_SCOJA (Ferredoxin OS=Scopolia japonica PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 4.435e-24
Identity = 51/86 (59.30%), Postives = 58/86 (67.44%), Query Frame = 2
Query:  209 GEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVXXXXXXXXXXXXIGERFCLTCAAYPTSDVTIETHKEEELAG 466
            G  E +CPDD +ILD AEE G +LPYSCRAG+CSSC GKV +GTV            + + F LTC AYP SDV IETHKEEEL G
Sbjct:   12 GPVEFDCPDDVYILDQAEEEGHELPYSCRAGSCSSCAGKVSAGTVDQSDGNFLDDDQMADGFVLTCVAYPQSDVIIETHKEEELTG 97          

HSP 2 Score: 26.5646 bits (57), Expect = 4.435e-24
Identity = 10/12 (83.33%), Postives = 12/12 (100.00%), Query Frame = 1
Query:  175 ATYKVKLITPEG 210
            ATYKVKL+TP+G
Sbjct:    1 ATYKVKLVTPDG 12          
BLAST of EY665416 vs. ExPASy Swiss-Prot
Match: FER_CAPAA (Ferredoxin OS=Capsicum annuum var. annuum PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 9.779e-24
Identity = 51/86 (59.30%), Postives = 57/86 (66.28%), Query Frame = 2
Query:  209 GEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVXXXXXXXXXXXXIGERFCLTCAAYPTSDVTIETHKEEELAG 466
            G  E +CPDD +ILD AEEAG DLPYSCRAG+CSSC GK+  G V            + E + LTC AYP SDVTIETHKE EL G
Sbjct:   12 GPIEFDCPDDVYILDQAEEAGHDLPYSCRAGSCSSCAGKIAGGAVDQTDGNFLDDDQLEEGWVLTCVAYPQSDVTIETHKEAELVG 97          

HSP 2 Score: 25.409 bits (54), Expect = 9.779e-24
Identity = 10/12 (83.33%), Postives = 12/12 (100.00%), Query Frame = 1
Query:  175 ATYKVKLITPEG 210
            A+YKVKLITP+G
Sbjct:    1 ASYKVKLITPDG 12          
BLAST of EY665416 vs. ExPASy Swiss-Prot
Match: FER_EUGVI (Ferredoxin OS=Euglena viridis PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.806e-23
Identity = 50/84 (59.52%), Postives = 59/84 (70.24%), Query Frame = 2
Query:  209 GEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVXXXXXXXXXXXXIGERFCLTCAAYPTSDVTIETHKEEEL 460
            GE  I C +D +ILDAAE+AG+DLPYSCRAGACSSCTG V  GTV            + + FCLTC  YPTS+ TIETHKE++L
Sbjct:   12 GEVTIECGEDQYILDAAEDAGIDLPYSCRAGACSSCTGIVKEGTVDQSDQSFLDDDQMAKGFCLTCTTYPTSNCTIETHKEDDL 95          

HSP 2 Score: 23.0978 bits (48), Expect = 2.806e-23
Identity = 9/12 (75.00%), Postives = 10/12 (83.33%), Query Frame = 1
Query:  175 ATYKVKLITPEG 210
            ATY VKLI P+G
Sbjct:    1 ATYSVKLINPDG 12          
BLAST of EY665416 vs. ExPASy Swiss-Prot
Match: FER_GLEJA (Ferredoxin OS=Gleichenia japonica PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 3.526e-23
Identity = 52/84 (61.90%), Postives = 57/84 (67.86%), Query Frame = 2
Query:  209 GEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVXXXXXXXXXXXXIGERFCLTCAAYPTSDVTIETHKEEEL 460
            GE  I  PDD FILDA EEAGLDLPYSCRAGACSSCTGK++ G V            + E F LTC AYP  D+TIETH EE+L
Sbjct:   12 GERTIEVPDDKFILDAGEEAGLDLPYSCRAGACSSCTGKLLDGRVDQSEQSFLDDDQMAEGFVLTCVAYPAGDITIETHAEEKL 95          
BLAST of EY665416 vs. ExPASy Swiss-Prot
Match: FER1_SYNP6 (Ferredoxin-1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=petF1 PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 3.526e-23
Identity = 53/80 (66.25%), Postives = 59/80 (73.75%), Query Frame = 2
Query:  221 INCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVXXXXXXXXXXXXIGERFCLTCAAYPTSDVTIETHKEEEL 460
            I+  DD++ILDAAEE G+DLPYSCRAGACS+C GKVVSGTV            I   F LTC AYPTSDVTIETHKEE+L
Sbjct:   19 IDVADDTYILDAAEEQGIDLPYSCRAGACSTCAGKVVSGTVDQSDQSFLDDDQIAAGFVLTCVAYPTSDVTIETHKEEDL 98          
BLAST of EY665416 vs. ExPASy Swiss-Prot
Match: FER1_SYNE7 (Ferredoxin-1 OS=Synechococcus elongatus (strain PCC 7942) GN=petF PE=3 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 3.526e-23
Identity = 53/80 (66.25%), Postives = 59/80 (73.75%), Query Frame = 2
Query:  221 INCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVXXXXXXXXXXXXIGERFCLTCAAYPTSDVTIETHKEEEL 460
            I+  DD++ILDAAEE G+DLPYSCRAGACS+C GKVVSGTV            I   F LTC AYPTSDVTIETHKEE+L
Sbjct:   19 IDVADDTYILDAAEEQGIDLPYSCRAGACSTCAGKVVSGTVDQSDQSFLDDDQIAAGFVLTCVAYPTSDVTIETHKEEDL 98          
BLAST of EY665416 vs. ExPASy Swiss-Prot
Match: FER1_ORYSJ (Ferredoxin-1, chloroplastic OS=Oryza sativa subsp. japonica GN=ADI1 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.559e-23
Identity = 48/84 (57.14%), Postives = 57/84 (67.86%), Query Frame = 2
Query:  209 GEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVXXXXXXXXXXXXIGERFCLTCAAYPTSDVTIETHKEEEL 460
            GE E+  PDD +ILD AEE G+DLPYSCRAG+CSSC GKVVSG +            +   + LTC AYP SDV IETHKE++L
Sbjct:   55 GEVELQVPDDVYILDQAEEEGIDLPYSCRAGSCSSCAGKVVSGEIDQSDQSFLDDDQVAAGWVLTCHAYPKSDVVIETHKEDDL 138          

HSP 2 Score: 27.7202 bits (60), Expect = 3.559e-23
Identity = 12/19 (63.16%), Postives = 14/19 (73.68%), Query Frame = 1
Query:  154 GGRVVAMATYKVKLITPEG 210
            G R+   ATY VKLITP+G
Sbjct:   37 GDRLRMQATYNVKLITPDG 55          
BLAST of EY665416 vs. ExPASy Swiss-Prot
Match: FER1_ORYSI (Ferredoxin-1, chloroplastic OS=Oryza sativa subsp. indica GN=ADI1 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.559e-23
Identity = 48/84 (57.14%), Postives = 57/84 (67.86%), Query Frame = 2
Query:  209 GEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVXXXXXXXXXXXXIGERFCLTCAAYPTSDVTIETHKEEEL 460
            GE E+  PDD +ILD AEE G+DLPYSCRAG+CSSC GKVVSG +            +   + LTC AYP SDV IETHKE++L
Sbjct:   55 GEVELQVPDDVYILDQAEEEGIDLPYSCRAGSCSSCAGKVVSGEIDQSDQSFLDDDQVAAGWVLTCHAYPKSDVVIETHKEDDL 138          

HSP 2 Score: 27.7202 bits (60), Expect = 3.559e-23
Identity = 12/19 (63.16%), Postives = 14/19 (73.68%), Query Frame = 1
Query:  154 GGRVVAMATYKVKLITPEG 210
            G R+   ATY VKLITP+G
Sbjct:   37 GDRLRMQATYNVKLITPDG 55          
The following BLAST results are available for this feature:
BLAST of EY665416 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FERA_ALOMA3.407e-2457.65Ferredoxin-A OS=Alocasia macrorrhiza PE=1 SV=1[more]
FER_SAMNI4.435e-2459.52Ferredoxin OS=Sambucus nigra PE=1 SV=1[more]
FER_SCOJA4.435e-2459.30Ferredoxin OS=Scopolia japonica PE=1 SV=1[more]
FER_CAPAA9.779e-2459.30Ferredoxin OS=Capsicum annuum var. annuum PE=1 SV=... [more]
FER_EUGVI2.806e-2359.52Ferredoxin OS=Euglena viridis PE=1 SV=1[more]
FER_GLEJA3.526e-2361.90Ferredoxin OS=Gleichenia japonica PE=1 SV=1[more]
FER1_SYNP63.526e-2366.25Ferredoxin-1 OS=Synechococcus sp. (strain ATCC 271... [more]
FER1_SYNE73.526e-2366.25Ferredoxin-1 OS=Synechococcus elongatus (strain PC... [more]
FER1_ORYSJ3.559e-2357.14Ferredoxin-1, chloroplastic OS=Oryza sativa subsp.... [more]
FER1_ORYSI3.559e-2357.14Ferredoxin-1, chloroplastic OS=Oryza sativa subsp.... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-007-F10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665416 ID=EY665416; Name=EY665416; organism=Citrus sinensis; type=EST; length=1026bp
CAACTGTCCCTTCCTTGAGCAAGAGCAGCAACCATGGCCACCCTCTCAAG
CGCCATGGTCAGCACCTCATTCATCAGAAGCAAGCCTACAGCGACCAGCC
TCAAAGCCATGCCTAACATGGGTCAGGCTATATTTGGCCTCAAAGCCAAC
AGAGGTGGCCGTGTTGTAGCCATGGCTACATACAAAGTCAAGCTCATTAC
ACCTGAGGGGAGAGGAAGAAATCAACTGTCCTGATGACTCGTTTATTCTT
GATGCTGCTGAAGAAGCTGGGCTTGATCTTCCGTACTCATGCAGGGCTGG
GGCTTGCTCTTCCTGTACTGGGAAAGTTGTGTCTGGAACCGTTGACCAGT
CGGAGCAAAGCTCTCTGGATGATGATCAAATTGGAGAAAGGTTTTGTCTC
ACTTGTGCTGCTTATCCAACAAGTGATGTTACTATAGAGACTCACAAGGA
AGAGGAGCTCGCTGGTTATAATGTGCTCTTGAATCTCATAATATCTTCTC
TTTATGTGTTGTGTTTTGCTGATAATTTTATGCTTTGAAAGGAAATTGAG
TATTTGAGAAGATTCTGGAATGTGTTTTTATTCTTGTTGCAAAAAATTGT
TGAATTGCACCGGCCAGAATGCCCTCGACCTAAAAGGGGAGTTCCCCTCC
ATCCAAACTGGTACCTTTCAAATTAAAATTCAACAAAAACAAAATTTTCC
GATAAAAAATCCACAGATAAAAAAACAATAAAAAGATTGTAAAGAATGAA
GATGACGAGAAAAATGAAGTGAACCATGGACGTTGATGATGAAAAGAGAT
GGGGGGGGGGGGGCCTAGGAGAAATAAGGAGGGGGGGGTTCTCTCTTTAT
ATCCTATACATAACGTGGTATTGACGGGGGGGACCCTGTTCACATCCCCA
ATGAACACTTCTCAGGATAAAAAACCCCAAACTCCAATTACAAGTGGAAA
ACCCCTTGAATTATGGGAGGTCGTTATTACATATATCTGTCTTTTTTTCT
GCAANATAATAAGGAGTGTAAATATA
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