EY665416

Overview
NameEY665416
Unique NameEY665416
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1026
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665416 vs. ExPASy Swiss-Prot
Match: FER_LEUGL (Ferredoxin OS=Leucaena glauca PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.186e-23
Identity = 51/86 (59.30%), Postives = 59/86 (68.60%), Query Frame = 2
Query:  209 GEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVXXXXXXXXXXXXIGERFCLTCAAYPTSDVTIETHKEEELAG 466
            G +E  CPDD +ILD AEE G++LPYSCRAG+CSSC GK+V G +            I E + LTCAAYP SDV IETHKEEEL G
Sbjct:   11 GPKEFECPDDVYILDQAEELGIELPYSCRAGSCSSCAGKLVEGDLDQSDQSFLDDEQIEEGWVLTCAAYPRSDVVIETHKEEELTG 96          

HSP 2 Score: 21.1718 bits (43), Expect = 6.186e-23
Identity = 7/10 (70.00%), Postives = 10/10 (100.00%), Query Frame = 1
Query:  181 YKVKLITPEG 210
            +KVKL+TP+G
Sbjct:    2 FKVKLLTPDG 11          
BLAST of EY665416 vs. ExPASy Swiss-Prot
Match: FER2_PHYAM (Ferredoxin-2 OS=Phytolacca americana PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 7.856e-23
Identity = 51/84 (60.71%), Postives = 59/84 (70.24%), Query Frame = 2
Query:  209 GEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVXXXXXXXXXXXXIGERFCLTCAAYPTSDVTIETHKEEEL 460
            G   I CP D+++LDAAEE+GLDLPYSCRAGACSSC GKV +G V            +   + LTC AYPTSDVTIETHKEE+L
Sbjct:   13 GTNTITCPADTYVLDAAEESGLDLPYSCRAGACSSCAGKVTAGAVNQEDGSFLEEEQMEAGWVLTCVAYPTSDVTIETHKEEDL 96          
BLAST of EY665416 vs. ExPASy Swiss-Prot
Match: FER1_CYACA (Ferredoxin OS=Cyanidium caldarium GN=petF PE=3 SV=3)

HSP 1 Score: 108.227 bits (269), Expect = 7.856e-23
Identity = 51/81 (62.96%), Postives = 59/81 (72.84%), Query Frame = 2
Query:  218 EINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVXXXXXXXXXXXXIGERFCLTCAAYPTSDVTIETHKEEEL 460
            EINCP+D +ILDAAEE G+DLPYSCRAGACS+C GK++SGTV            I E F LTC AYPTS+ TI TH+EE L
Sbjct:   18 EINCPNDQYILDAAEEQGIDLPYSCRAGACSTCAGKLISGTVDQSDQSFLDDEQIKEGFVLTCVAYPTSNCTILTHQEEAL 98          
BLAST of EY665416 vs. ExPASy Swiss-Prot
Match: FER_GUITH (Ferredoxin OS=Guillardia theta GN=petF PE=3 SV=3)

HSP 1 Score: 107.842 bits (268), Expect = 1.026e-22
Identity = 50/83 (60.24%), Postives = 60/83 (72.29%), Query Frame = 2
Query:  212 EEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVXXXXXXXXXXXXIGERFCLTCAAYPTSDVTIETHKEEEL 460
            ++ I+CPDD +ILDAAEE G+DLPYSCRAGACS+C GKV +G+V            IG+ F LTC AYPTSD TI TH+EE L
Sbjct:   14 DKTIDCPDDQYILDAAEEQGIDLPYSCRAGACSTCAGKVAAGSVDQSDQSFLDDSQIGDGFVLTCVAYPTSDCTILTHQEEGL 96          
BLAST of EY665416 vs. ExPASy Swiss-Prot
Match: FER2_PHYES (Ferredoxin-2 OS=Phytolacca esculenta PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.026e-22
Identity = 50/85 (58.82%), Postives = 61/85 (71.76%), Query Frame = 2
Query:  209 GEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVXXXXXXXXXXXXIGERFCLTCAAYPTSDVTIETHKEEELA 463
            G + I CP D+++LDAAE+ GLDLPYSCRAGACSSC GKV +G+V            +   + LTC AYPTSDVTIETHKEE+L+
Sbjct:   13 GTKTITCPADTYVLDAAEDTGLDLPYSCRAGACSSCAGKVTAGSVNQEDGSFLDEEQMEAGWVLTCVAYPTSDVTIETHKEEDLS 97          
BLAST of EY665416 vs. ExPASy Swiss-Prot
Match: FER_PANGI (Ferredoxin OS=Panax ginseng PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.048e-22
Identity = 50/84 (59.52%), Postives = 57/84 (67.86%), Query Frame = 2
Query:  209 GEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVXXXXXXXXXXXXIGERFCLTCAAYPTSDVTIETHKEEEL 460
            GE+E  CPDD +ILD AEE G+DLPYSCRAG+CSSC GKVVSG V            +   + LTC AY  SDV IETHKEEE+
Sbjct:   13 GEKEFECPDDVYILDNAEEIGIDLPYSCRAGSCSSCAGKVVSGKVDNSDNSFLNDDNMDAGYVLTCHAYANSDVVIETHKEEEV 96          

HSP 2 Score: 23.8682 bits (50), Expect = 1.048e-22
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 1
Query:  181 YKVKLITPEG 210
            YKVKL+TPEG
Sbjct:    4 YKVKLLTPEG 13          
BLAST of EY665416 vs. ExPASy Swiss-Prot
Match: FER_MEDSA (Ferredoxin OS=Medicago sativa PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.048e-22
Identity = 50/84 (59.52%), Postives = 56/84 (66.67%), Query Frame = 2
Query:  209 GEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVXXXXXXXXXXXXIGERFCLTCAAYPTSDVTIETHKEEEL 460
            G +E  CPDD +ILD AEE G+ LPYSCRAG+CSSC GKV +G V            I E + LTC AY  SDVTIETHKEEEL
Sbjct:   12 GTQEFECPDDVYILDHAEEEGIVLPYSCRAGSCSSCAGKVAAGEVNQSDGSFLDDDQIEEGWVLTCVAYAKSDVTIETHKEEEL 95          

HSP 2 Score: 26.1794 bits (56), Expect = 1.048e-22
Identity = 10/12 (83.33%), Postives = 12/12 (100.00%), Query Frame = 1
Query:  175 ATYKVKLITPEG 210
            A+YKVKL+TPEG
Sbjct:    1 ASYKVKLVTPEG 12          
BLAST of EY665416 vs. ExPASy Swiss-Prot
Match: FER_MASLA (Ferredoxin OS=Mastigocladus laminosus GN=petF PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 1.340e-22
Identity = 51/80 (63.75%), Postives = 57/80 (71.25%), Query Frame = 2
Query:  221 INCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVXXXXXXXXXXXXIGERFCLTCAAYPTSDVTIETHKEEEL 460
            I  PDD +ILDAAEEAG+DLPYSCRAGACS+C GK++SGTV            I   + LTC AYPTSD  IETHKEEEL
Sbjct:   19 IEVPDDQYILDAAEEAGIDLPYSCRAGACSTCAGKLISGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCVIETHKEEEL 98          
BLAST of EY665416 vs. ExPASy Swiss-Prot
Match: FER_CHLFR (Ferredoxin OS=Chlorogloeopsis fritschii PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 2.286e-22
Identity = 52/82 (63.41%), Postives = 58/82 (70.73%), Query Frame = 2
Query:  215 EEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVXXXXXXXXXXXXIGERFCLTCAAYPTSDVTIETHKEEEL 460
            + I   DD++ILDAAEEAGLDLPYSCRAGACS+C GK+ SGTV            I   + LTC AYPTSD TIETHKEEEL
Sbjct:   17 QTIEVDDDTYILDAAEEAGLDLPYSCRAGACSTCAGKIKSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEEEL 98          
BLAST of EY665416 vs. ExPASy Swiss-Prot
Match: FER3_ARATH (Ferredoxin-3, chloroplastic OS=Arabidopsis thaliana GN=FD3 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.905e-22
Identity = 46/83 (55.42%), Postives = 55/83 (66.27%), Query Frame = 2
Query:  212 EEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVXXXXXXXXXXXXIGERFCLTCAAYPTSDVTIETHKEEEL 460
            E+E    DD +ILDAAEEAG+DLPYSCRAGACS+C G++VSG V            + + + LTC AYP SD  I THKE EL
Sbjct:   72 EDEFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDGSFLEDSHLEKGYVLTCVAYPQSDCVIHTHKETEL 154          

HSP 2 Score: 28.8758 bits (63), Expect = 2.905e-22
Identity = 16/29 (55.17%), Postives = 21/29 (72.41%), Query Frame = 1
Query:  133 FGLK--ANRGGRVVAMATYKVKLITPEGR 213
            FGLK  AN GG  ++ A YKVKL+ P+G+
Sbjct:   44 FGLKCSANSGGATMS-AVYKVKLLGPDGQ 71          
The following BLAST results are available for this feature:
BLAST of EY665416 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER_LEUGL6.186e-2359.30Ferredoxin OS=Leucaena glauca PE=1 SV=1[more]
FER2_PHYAM7.856e-2360.71Ferredoxin-2 OS=Phytolacca americana PE=1 SV=1[more]
FER1_CYACA7.856e-2362.96Ferredoxin OS=Cyanidium caldarium GN=petF PE=3 SV=... [more]
FER_GUITH1.026e-2260.24Ferredoxin OS=Guillardia theta GN=petF PE=3 SV=3[more]
FER2_PHYES1.026e-2258.82Ferredoxin-2 OS=Phytolacca esculenta PE=1 SV=1[more]
FER_PANGI1.048e-2259.52Ferredoxin OS=Panax ginseng PE=1 SV=1[more]
FER_MEDSA1.048e-2259.52Ferredoxin OS=Medicago sativa PE=1 SV=1[more]
FER_MASLA1.340e-2263.75Ferredoxin OS=Mastigocladus laminosus GN=petF PE=1... [more]
FER_CHLFR2.286e-2263.41Ferredoxin OS=Chlorogloeopsis fritschii PE=1 SV=2[more]
FER3_ARATH2.905e-2255.42Ferredoxin-3, chloroplastic OS=Arabidopsis thalian... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-007-F10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665416 ID=EY665416; Name=EY665416; organism=Citrus sinensis; type=EST; length=1026bp
CAACTGTCCCTTCCTTGAGCAAGAGCAGCAACCATGGCCACCCTCTCAAG
CGCCATGGTCAGCACCTCATTCATCAGAAGCAAGCCTACAGCGACCAGCC
TCAAAGCCATGCCTAACATGGGTCAGGCTATATTTGGCCTCAAAGCCAAC
AGAGGTGGCCGTGTTGTAGCCATGGCTACATACAAAGTCAAGCTCATTAC
ACCTGAGGGGAGAGGAAGAAATCAACTGTCCTGATGACTCGTTTATTCTT
GATGCTGCTGAAGAAGCTGGGCTTGATCTTCCGTACTCATGCAGGGCTGG
GGCTTGCTCTTCCTGTACTGGGAAAGTTGTGTCTGGAACCGTTGACCAGT
CGGAGCAAAGCTCTCTGGATGATGATCAAATTGGAGAAAGGTTTTGTCTC
ACTTGTGCTGCTTATCCAACAAGTGATGTTACTATAGAGACTCACAAGGA
AGAGGAGCTCGCTGGTTATAATGTGCTCTTGAATCTCATAATATCTTCTC
TTTATGTGTTGTGTTTTGCTGATAATTTTATGCTTTGAAAGGAAATTGAG
TATTTGAGAAGATTCTGGAATGTGTTTTTATTCTTGTTGCAAAAAATTGT
TGAATTGCACCGGCCAGAATGCCCTCGACCTAAAAGGGGAGTTCCCCTCC
ATCCAAACTGGTACCTTTCAAATTAAAATTCAACAAAAACAAAATTTTCC
GATAAAAAATCCACAGATAAAAAAACAATAAAAAGATTGTAAAGAATGAA
GATGACGAGAAAAATGAAGTGAACCATGGACGTTGATGATGAAAAGAGAT
GGGGGGGGGGGGGCCTAGGAGAAATAAGGAGGGGGGGGTTCTCTCTTTAT
ATCCTATACATAACGTGGTATTGACGGGGGGGACCCTGTTCACATCCCCA
ATGAACACTTCTCAGGATAAAAAACCCCAAACTCCAATTACAAGTGGAAA
ACCCCTTGAATTATGGGAGGTCGTTATTACATATATCTGTCTTTTTTTCT
GCAANATAATAAGGAGTGTAAATATA
back to top