EY665416

Overview
NameEY665416
Unique NameEY665416
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1026
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665416 vs. ExPASy Swiss-Prot
Match: FER1_NOSMU (Ferredoxin-1 OS=Nostoc muscorum PE=1 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 3.899e-22
Identity = 50/83 (60.24%), Postives = 59/83 (71.08%), Query Frame = 2
Query:  212 EEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVXXXXXXXXXXXXIGERFCLTCAAYPTSDVTIETHKEEEL 460
            E  I+ PDD +ILD AE+ GLDLPYSCRAGACS+C GK+VSGTV            I + + LTC AYPTSD+ IETHKEE+L
Sbjct:   16 ETTIDVPDDEYILDIAEDQGLDLPYSCRAGACSTCAGKIVSGTVDQSDQSFLDDDQIEKGYVLTCVAYPTSDLKIETHKEEDL 98          
BLAST of EY665416 vs. ExPASy Swiss-Prot
Match: FER1_SYNP2 (Ferredoxin-1 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=petF PE=3 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 5.089e-22
Identity = 49/84 (58.33%), Postives = 57/84 (67.86%), Query Frame = 2
Query:  209 GEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVXXXXXXXXXXXXIGERFCLTCAAYPTSDVTIETHKEEEL 460
            GE   + PDD +ILD+A +AG DLP SCRAGACS+C GK+VSGTV            I   + LTC AYP SDVTIET+KEEEL
Sbjct:   13 GEVSYDAPDDEYILDSAGDAGYDLPASCRAGACSTCAGKIVSGTVDQSEQSFLDDDQIEAGYVLTCIAYPQSDVTIETNKEEEL 96          

HSP 2 Score: 26.5646 bits (57), Expect = 5.089e-22
Identity = 11/13 (84.62%), Postives = 12/13 (92.31%), Query Frame = 1
Query:  172 MATYKVKLITPEG 210
            MATYKV LITP+G
Sbjct:    1 MATYKVTLITPDG 13          
BLAST of EY665416 vs. ExPASy Swiss-Prot
Match: FER_SPIMA (Ferredoxin OS=Spirulina maxima PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 5.092e-22
Identity = 49/82 (59.76%), Postives = 59/82 (71.95%), Query Frame = 2
Query:  215 EEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVXXXXXXXXXXXXIGERFCLTCAAYPTSDVTIETHKEEEL 460
            E I+C DD++ILDAAEEAGLDLPYSCRAGACS+C GK+ SG++            I   + LTC AYPTSD TI+TH+EE L
Sbjct:   17 ETIDCDDDTYILDAAEEAGLDLPYSCRAGACSTCAGKITSGSIDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIQTHQEEGL 98          
BLAST of EY665416 vs. ExPASy Swiss-Prot
Match: FER_BUMFI (Ferredoxin OS=Bumilleriopsis filiformis PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 5.092e-22
Identity = 47/80 (58.75%), Postives = 57/80 (71.25%), Query Frame = 2
Query:  221 INCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVXXXXXXXXXXXXIGERFCLTCAAYPTSDVTIETHKEEEL 460
            I CPDD FILDAAEE G++LPYSCRAGACS+C GKV+SGT+            +G  F LTC AYPTSD  ++TH E++L
Sbjct:   18 IKCPDDQFILDAAEEQGIELPYSCRAGACSTCAGKVLSGTIDQSEQSFLDDDQMGAGFLLTCVAYPTSDCKVQTHAEDDL 97          
BLAST of EY665416 vs. ExPASy Swiss-Prot
Match: FER_PERBI (Ferredoxin OS=Peridinium bipes PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 6.651e-22
Identity = 47/84 (55.95%), Postives = 59/84 (70.24%), Query Frame = 2
Query:  209 GEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVXXXXXXXXXXXXIGERFCLTCAAYPTSDVTIETHKEEEL 460
            G++   CP DS+ILD AEE GL+LPYSCRAG+CSSC GKV++G++             G+ +CLTC  YPTSDVTI+TH E EL
Sbjct:   10 GKKSFECPGDSYILDKAEEEGLELPYSCRAGSCSSCAGKVLTGSIDQSDQAFLDDDQGGDGYCLTCVTYPTSDVTIKTHCESEL 93          
BLAST of EY665416 vs. ExPASy Swiss-Prot
Match: FER_NOSMU (Ferredoxin OS=Nostoc muscorum PE=1 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 6.651e-22
Identity = 50/83 (60.24%), Postives = 58/83 (69.88%), Query Frame = 2
Query:  212 EEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVXXXXXXXXXXXXIGERFCLTCAAYPTSDVTIETHKEEEL 460
            + EI  PDD +ILDAAEE G DLP+SCRAGACS+C GK+VSGTV            I   + LTC AYPTSDV I+THKEE+L
Sbjct:   16 KHEIEVPDDEYILDAAEEEGYDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDL 98          
BLAST of EY665416 vs. ExPASy Swiss-Prot
Match: FER1_ANAVT (Ferredoxin-1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=petF1 PE=1 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 6.651e-22
Identity = 50/80 (62.50%), Postives = 58/80 (72.50%), Query Frame = 2
Query:  221 INCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVXXXXXXXXXXXXIGERFCLTCAAYPTSDVTIETHKEEEL 460
            I+ PDD +ILDAAEE G DLP+SCRAGACS+C GK+VSGTV            I   + LTC AYPTSDVTI+THKEE+L
Sbjct:   19 IDVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVTIQTHKEEDL 98          
BLAST of EY665416 vs. ExPASy Swiss-Prot
Match: FER1_ANASP (Ferredoxin-1 OS=Anabaena sp. (strain PCC 7120) GN=petF PE=1 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 6.651e-22
Identity = 50/83 (60.24%), Postives = 58/83 (69.88%), Query Frame = 2
Query:  212 EEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVXXXXXXXXXXXXIGERFCLTCAAYPTSDVTIETHKEEEL 460
            + EI  PDD +ILDAAEE G DLP+SCRAGACS+C GK+VSGTV            I   + LTC AYPTSDV I+THKEE+L
Sbjct:   16 KHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDL 98          
BLAST of EY665416 vs. ExPASy Swiss-Prot
Match: FER1_ANASO (Ferredoxin-1 OS=Anabaena sp. (strain PCC 7119) GN=petF PE=1 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 6.651e-22
Identity = 50/83 (60.24%), Postives = 58/83 (69.88%), Query Frame = 2
Query:  212 EEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVXXXXXXXXXXXXIGERFCLTCAAYPTSDVTIETHKEEEL 460
            + EI  PDD +ILDAAEE G DLP+SCRAGACS+C GK+VSGTV            I   + LTC AYPTSDV I+THKEE+L
Sbjct:   16 KHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDL 98          
BLAST of EY665416 vs. ExPASy Swiss-Prot
Match: FER_SPIPL (Ferredoxin OS=Spirulina platensis PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 1.134e-21
Identity = 49/82 (59.76%), Postives = 58/82 (70.73%), Query Frame = 2
Query:  215 EEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVXXXXXXXXXXXXIGERFCLTCAAYPTSDVTIETHKEEEL 460
            E I+C DD++ILDAAEEAGLDLPYSCRAGACS+C G + SGT+            I   + LTC AYPTSD TI+TH+EE L
Sbjct:   17 ETIDCDDDTYILDAAEEAGLDLPYSCRAGACSTCAGTITSGTIDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIKTHQEEGL 98          
The following BLAST results are available for this feature:
BLAST of EY665416 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER1_NOSMU3.899e-2260.24Ferredoxin-1 OS=Nostoc muscorum PE=1 SV=2[more]
FER1_SYNP25.089e-2258.33Ferredoxin-1 OS=Synechococcus sp. (strain ATCC 272... [more]
FER_SPIMA5.092e-2259.76Ferredoxin OS=Spirulina maxima PE=1 SV=2[more]
FER_BUMFI5.092e-2258.75Ferredoxin OS=Bumilleriopsis filiformis PE=1 SV=1[more]
FER_PERBI6.651e-2255.95Ferredoxin OS=Peridinium bipes PE=1 SV=1[more]
FER_NOSMU6.651e-2260.24Ferredoxin OS=Nostoc muscorum PE=1 SV=2[more]
FER1_ANAVT6.651e-2262.50Ferredoxin-1 OS=Anabaena variabilis (strain ATCC 2... [more]
FER1_ANASP6.651e-2260.24Ferredoxin-1 OS=Anabaena sp. (strain PCC 7120) GN=... [more]
FER1_ANASO6.651e-2260.24Ferredoxin-1 OS=Anabaena sp. (strain PCC 7119) GN=... [more]
FER_SPIPL1.134e-2159.76Ferredoxin OS=Spirulina platensis PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-007-F10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665416 ID=EY665416; Name=EY665416; organism=Citrus sinensis; type=EST; length=1026bp
CAACTGTCCCTTCCTTGAGCAAGAGCAGCAACCATGGCCACCCTCTCAAG
CGCCATGGTCAGCACCTCATTCATCAGAAGCAAGCCTACAGCGACCAGCC
TCAAAGCCATGCCTAACATGGGTCAGGCTATATTTGGCCTCAAAGCCAAC
AGAGGTGGCCGTGTTGTAGCCATGGCTACATACAAAGTCAAGCTCATTAC
ACCTGAGGGGAGAGGAAGAAATCAACTGTCCTGATGACTCGTTTATTCTT
GATGCTGCTGAAGAAGCTGGGCTTGATCTTCCGTACTCATGCAGGGCTGG
GGCTTGCTCTTCCTGTACTGGGAAAGTTGTGTCTGGAACCGTTGACCAGT
CGGAGCAAAGCTCTCTGGATGATGATCAAATTGGAGAAAGGTTTTGTCTC
ACTTGTGCTGCTTATCCAACAAGTGATGTTACTATAGAGACTCACAAGGA
AGAGGAGCTCGCTGGTTATAATGTGCTCTTGAATCTCATAATATCTTCTC
TTTATGTGTTGTGTTTTGCTGATAATTTTATGCTTTGAAAGGAAATTGAG
TATTTGAGAAGATTCTGGAATGTGTTTTTATTCTTGTTGCAAAAAATTGT
TGAATTGCACCGGCCAGAATGCCCTCGACCTAAAAGGGGAGTTCCCCTCC
ATCCAAACTGGTACCTTTCAAATTAAAATTCAACAAAAACAAAATTTTCC
GATAAAAAATCCACAGATAAAAAAACAATAAAAAGATTGTAAAGAATGAA
GATGACGAGAAAAATGAAGTGAACCATGGACGTTGATGATGAAAAGAGAT
GGGGGGGGGGGGGCCTAGGAGAAATAAGGAGGGGGGGGTTCTCTCTTTAT
ATCCTATACATAACGTGGTATTGACGGGGGGGACCCTGTTCACATCCCCA
ATGAACACTTCTCAGGATAAAAAACCCCAAACTCCAATTACAAGTGGAAA
ACCCCTTGAATTATGGGAGGTCGTTATTACATATATCTGTCTTTTTTTCT
GCAANATAATAAGGAGTGTAAATATA
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