EY665416

Overview
NameEY665416
Unique NameEY665416
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1026
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665416 vs. ExPASy Swiss-Prot
Match: FER1_CYAPA (Ferredoxin-1 OS=Cyanophora paradoxa GN=petF PE=1 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 1.134e-21
Identity = 47/80 (58.75%), Postives = 56/80 (70.00%), Query Frame = 2
Query:  221 INCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVXXXXXXXXXXXXIGERFCLTCAAYPTSDVTIETHKEEEL 460
            I CPDD +ILDAAEE G+DLPYSCRAGACS+C GKVV GTV            +   + LTC AYP+SD T++TH+EE L
Sbjct:   19 IECPDDEYILDAAEEQGIDLPYSCRAGACSTCAGKVVEGTVDQSDQSFLDDAQLAAGYVLTCVAYPSSDCTVKTHQEESL 98          
BLAST of EY665416 vs. ExPASy Swiss-Prot
Match: FER_ARCLA (Ferredoxin OS=Arctium lappa PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.459e-21
Identity = 51/85 (60.00%), Postives = 59/85 (69.41%), Query Frame = 2
Query:  209 GEEEINCPDDSFILD-AAEEAGLDLPYSCRAGACSSCTGKVVSGTVXXXXXXXXXXXXIGERFCLTCAAYPTSDVTIETHKEEEL 460
            G++E   PDD +ILD AAEE G DLPYSCRAG+CSSC GKV +G+V            +   + LTC AYPTSDVTIETHKEEEL
Sbjct:   12 GKQEFEVPDDVYILDHAAEEVG-DLPYSCRAGSCSSCAGKVTAGSVDQSDGSYLDDDQMEAGWVLTCVAYPTSDVTIETHKEEEL 95          

HSP 2 Score: 26.5646 bits (57), Expect = 1.459e-21
Identity = 11/13 (84.62%), Postives = 12/13 (92.31%), Query Frame = 1
Query:  175 ATYKVKLITPEGR 213
            ATYKV LITPEG+
Sbjct:    1 ATYKVTLITPEGK 13          
BLAST of EY665416 vs. ExPASy Swiss-Prot
Match: FER3_MAIZE (Ferredoxin-3, chloroplastic OS=Zea mays GN=FDX3 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.836e-21
Identity = 44/83 (53.01%), Postives = 55/83 (66.27%), Query Frame = 2
Query:  212 EEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVXXXXXXXXXXXXIGERFCLTCAAYPTSDVTIETHKEEEL 460
            E E + PDD++ILDAAE AG++LPYSCRAGACS+C GK+ SG+V              E + LTC +YP SD  I THKE +L
Sbjct:   69 EHEFDAPDDAYILDAAETAGVELPYSCRAGACSTCAGKIESGSVDQSDGSFLDDGQQEEGYVLTCVSYPKSDCVIHTHKEGDL 151          

HSP 2 Score: 30.0314 bits (66), Expect = 1.836e-21
Identity = 20/61 (32.79%), Postives = 31/61 (50.82%), Query Frame = 1
Query:   28 ATMATLSSAMVSTSFIRSKPTATSLKAMPNMGQAIFGLKANRGGRVVAMATYKVKLITPEG 210
            AT  TL   + +T   ++   + S  +  +    +  LK ++   V AMA YKVKL+ PEG
Sbjct:    7 ATSCTLLGNVRTTQASQTAVKSPSSLSFFSQVTKVPSLKTSKKLDVSAMAVYKVKLVGPEG 67          
BLAST of EY665416 vs. ExPASy Swiss-Prot
Match: FER2_CYACA (Ferredoxin OS=Cyanidium caldarium GN=PETF PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.527e-21
Identity = 48/80 (60.00%), Postives = 55/80 (68.75%), Query Frame = 2
Query:  221 INCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVXXXXXXXXXXXXIGERFCLTCAAYPTSDVTIETHKEEEL 460
            INCP D +ILDAAEE G+DLPYSCRAGACS+C GK+V G+V            I   F LTC AYPTSD  I+TH+EE L
Sbjct:   17 INCPGDQYILDAAEEQGVDLPYSCRAGACSTCAGKLVKGSVDQSDQSFLDEEQINNGFILTCVAYPTSDCVIQTHQEEAL 96          
BLAST of EY665416 vs. ExPASy Swiss-Prot
Match: FER1_RAPSA (Ferredoxin, root R-B1 OS=Raphanus sativus PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 4.183e-21
Identity = 47/83 (56.63%), Postives = 55/83 (66.27%), Query Frame = 2
Query:  212 EEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVXXXXXXXXXXXXIGERFCLTCAAYPTSDVTIETHKEEEL 460
            E E + PDD +ILDAAEEAG+DLPYSCRAGACS+C GK+  G V              + + LTC AYP SD+ I THKEEEL
Sbjct:   15 ENEFDVPDDQYILDAAEEAGVDLPYSCRAGACSTCAGKIEKGQVDQSDGSFLEDHHFEKGYVLTCVAYPQSDLVIHTHKEEEL 97          

HSP 2 Score: 22.7126 bits (47), Expect = 4.183e-21
Identity = 9/13 (69.23%), Postives = 11/13 (84.62%), Query Frame = 1
Query:  175 ATYKVKLITPEGR 213
            A YKVKLI P+G+
Sbjct:    2 AVYKVKLIGPDGQ 14          
BLAST of EY665416 vs. ExPASy Swiss-Prot
Match: FER3_CYACA (Ferredoxin OS=Cyanidium caldarium GN=PETF PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 4.311e-21
Identity = 48/83 (57.83%), Postives = 56/83 (67.47%), Query Frame = 2
Query:  212 EEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVXXXXXXXXXXXXIGERFCLTCAAYPTSDVTIETHKEEEL 460
            +E I CPDD +ILDAAEE GLDLPYSCRAGACS+C GK++ G V            +   F LTC AYPTS+ TI TH+EE L
Sbjct:   15 DETIECPDDQYILDAAEEQGLDLPYSCRAGACSTCAGKLLEGEVDQSDQSFLDDDQVKAGFVLTCVAYPTSNATILTHQEESL 97          
BLAST of EY665416 vs. ExPASy Swiss-Prot
Match: FER_MARPO (Ferredoxin OS=Marchantia polymorpha PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 5.630e-21
Identity = 49/84 (58.33%), Postives = 58/84 (69.05%), Query Frame = 2
Query:  209 GEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVXXXXXXXXXXXXIGERFCLTCAAYPTSDVTIETHKEEEL 460
            G+  I+  DD +ILDAAEEAGL LPYSCRAGACSSC GKV +G V            + E + LTC AYPTSD+TI+TH+EE L
Sbjct:   11 GQSVIDVEDDEYILDAAEEAGLSLPYSCRAGACSSCAGKVTAGEVDQSDESFLDDDQMDEGYVLTCIAYPTSDLTIDTHQEEAL 94          
BLAST of EY665416 vs. ExPASy Swiss-Prot
Match: FER_APHSA (Ferredoxin-1 OS=Aphanothece sacrum PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 9.215e-21
Identity = 48/84 (57.14%), Postives = 53/84 (63.10%), Query Frame = 2
Query:  209 GEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVXXXXXXXXXXXXIGERFCLTCAAYPTSDVTIETHKEEEL 460
            G+  I  PDD +ILD AEE GLDLPYSCRAGACS+C GK+VSG              I   + LTC AYPT D  IETHKEE L
Sbjct:   13 GDNVITVPDDEYILDVAEEEGLDLPYSCRAGACSTCAGKLVSGPAPDEDQSFLDDDQIQAGYILTCVAYPTGDCVIETHKEEAL 96          

HSP 2 Score: 22.3274 bits (46), Expect = 9.215e-21
Identity = 9/13 (69.23%), Postives = 11/13 (84.62%), Query Frame = 1
Query:  172 MATYKVKLITPEG 210
            MA+YKV L TP+G
Sbjct:    1 MASYKVTLKTPDG 13          
BLAST of EY665416 vs. ExPASy Swiss-Prot
Match: FER_THAWE (Ferredoxin OS=Thalassiosira weissflogii GN=petF PE=3 SV=3)

HSP 1 Score: 100.908 bits (250), Expect = 1.199e-20
Identity = 47/80 (58.75%), Postives = 55/80 (68.75%), Query Frame = 2
Query:  221 INCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVXXXXXXXXXXXXIGERFCLTCAAYPTSDVTIETHKEEEL 460
            I+C DD F+LDAAEEAG+DLPYSCRAGACS+C GKV  GT+            +G  F LTC AYP SD TI  H+E+EL
Sbjct:   19 IDCNDDVFVLDAAEEAGIDLPYSCRAGACSTCAGKVTEGTIDQSEQTFLDDDQMGAGFVLTCIAYPKSDCTILVHQEDEL 98          

HSP 2 Score: 20.7866 bits (42), Expect = 1.199e-20
Identity = 9/12 (75.00%), Postives = 10/12 (83.33%), Query Frame = 1
Query:  172 MATYKVKLITPE 207
            MATYKV LI+ E
Sbjct:    1 MATYKVTLISEE 12          
BLAST of EY665416 vs. ExPASy Swiss-Prot
Match: FER2_DUNSA (Ferredoxin-2 OS=Dunaliella salina PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.638e-20
Identity = 49/84 (58.33%), Postives = 56/84 (66.67%), Query Frame = 2
Query:  209 GEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVXXXXXXXXXXXXIGERFCLTCAAYPTSDVTIETHKEEEL 460
            G++ I    D++ILDAAEEAGLDLPYSCRAGACSSC GKV +GT+             G  F LTC AY TSD TI TH+EE L
Sbjct:   11 GDQTIEVSPDAYILDAAEEAGLDLPYSCRAGACSSCAGKVEAGTIDQSDQSFLDDDQQGRGFVLTCVAYATSDCTISTHQEESL 94          
The following BLAST results are available for this feature:
BLAST of EY665416 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER1_CYAPA1.134e-2158.75Ferredoxin-1 OS=Cyanophora paradoxa GN=petF PE=1 S... [more]
FER_ARCLA1.459e-2160.00Ferredoxin OS=Arctium lappa PE=1 SV=1[more]
FER3_MAIZE1.836e-2153.01Ferredoxin-3, chloroplastic OS=Zea mays GN=FDX3 PE... [more]
FER2_CYACA2.527e-2160.00Ferredoxin OS=Cyanidium caldarium GN=PETF PE=1 SV=... [more]
FER1_RAPSA4.183e-2156.63Ferredoxin, root R-B1 OS=Raphanus sativus PE=1 SV=... [more]
FER3_CYACA4.311e-2157.83Ferredoxin OS=Cyanidium caldarium GN=PETF PE=1 SV=... [more]
FER_MARPO5.630e-2158.33Ferredoxin OS=Marchantia polymorpha PE=1 SV=1[more]
FER_APHSA9.215e-2157.14Ferredoxin-1 OS=Aphanothece sacrum PE=1 SV=2[more]
FER_THAWE1.199e-2058.75Ferredoxin OS=Thalassiosira weissflogii GN=petF PE... [more]
FER2_DUNSA1.638e-2058.33Ferredoxin-2 OS=Dunaliella salina PE=1 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-007-F10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665416 ID=EY665416; Name=EY665416; organism=Citrus sinensis; type=EST; length=1026bp
CAACTGTCCCTTCCTTGAGCAAGAGCAGCAACCATGGCCACCCTCTCAAG
CGCCATGGTCAGCACCTCATTCATCAGAAGCAAGCCTACAGCGACCAGCC
TCAAAGCCATGCCTAACATGGGTCAGGCTATATTTGGCCTCAAAGCCAAC
AGAGGTGGCCGTGTTGTAGCCATGGCTACATACAAAGTCAAGCTCATTAC
ACCTGAGGGGAGAGGAAGAAATCAACTGTCCTGATGACTCGTTTATTCTT
GATGCTGCTGAAGAAGCTGGGCTTGATCTTCCGTACTCATGCAGGGCTGG
GGCTTGCTCTTCCTGTACTGGGAAAGTTGTGTCTGGAACCGTTGACCAGT
CGGAGCAAAGCTCTCTGGATGATGATCAAATTGGAGAAAGGTTTTGTCTC
ACTTGTGCTGCTTATCCAACAAGTGATGTTACTATAGAGACTCACAAGGA
AGAGGAGCTCGCTGGTTATAATGTGCTCTTGAATCTCATAATATCTTCTC
TTTATGTGTTGTGTTTTGCTGATAATTTTATGCTTTGAAAGGAAATTGAG
TATTTGAGAAGATTCTGGAATGTGTTTTTATTCTTGTTGCAAAAAATTGT
TGAATTGCACCGGCCAGAATGCCCTCGACCTAAAAGGGGAGTTCCCCTCC
ATCCAAACTGGTACCTTTCAAATTAAAATTCAACAAAAACAAAATTTTCC
GATAAAAAATCCACAGATAAAAAAACAATAAAAAGATTGTAAAGAATGAA
GATGACGAGAAAAATGAAGTGAACCATGGACGTTGATGATGAAAAGAGAT
GGGGGGGGGGGGGCCTAGGAGAAATAAGGAGGGGGGGGTTCTCTCTTTAT
ATCCTATACATAACGTGGTATTGACGGGGGGGACCCTGTTCACATCCCCA
ATGAACACTTCTCAGGATAAAAAACCCCAAACTCCAATTACAAGTGGAAA
ACCCCTTGAATTATGGGAGGTCGTTATTACATATATCTGTCTTTTTTTCT
GCAANATAATAAGGAGTGTAAATATA
back to top