EY665416

Overview
NameEY665416
Unique NameEY665416
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1026
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665416 vs. ExPASy Swiss-Prot
Match: FER1_DUNSA (Ferredoxin-1 OS=Dunaliella salina PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.638e-20
Identity = 49/84 (58.33%), Postives = 57/84 (67.86%), Query Frame = 2
Query:  209 GEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVXXXXXXXXXXXXIGERFCLTCAAYPTSDVTIETHKEEEL 460
            GE+++    DS+ILDAAEEAG+DLPYSCRAG+CSSC GKV SGTV            +   F LTC AY TSD TI TH+EE L
Sbjct:   11 GEQKVEVSPDSYILDAAEEAGVDLPYSCRAGSCSSCAGKVESGTVDQSDQSFLDDDQMDSGFVLTCVAYATSDCTIVTHQEENL 94          
BLAST of EY665416 vs. ExPASy Swiss-Prot
Match: FER1_PLEBO (Ferredoxin-1 OS=Plectonema boryanum GN=petF1 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.139e-20
Identity = 47/80 (58.75%), Postives = 55/80 (68.75%), Query Frame = 2
Query:  221 INCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVXXXXXXXXXXXXIGERFCLTCAAYPTSDVTIETHKEEEL 460
            I  PDD +ILDAAEE G+DLPYSCRAGACS+C GK+ +GTV            I   + LTC AYPTSD TI TH+EE+L
Sbjct:   19 IEVPDDEYILDAAEEQGIDLPYSCRAGACSTCAGKITAGTVDQSDQSFLDDDQIQAGYVLTCVAYPTSDCTILTHQEEDL 98          
BLAST of EY665416 vs. ExPASy Swiss-Prot
Match: FER2_RAPSA (Ferredoxin, root R-B2 OS=Raphanus sativus PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 2.641e-20
Identity = 47/83 (56.63%), Postives = 52/83 (62.65%), Query Frame = 2
Query:  212 EEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVXXXXXXXXXXXXIGERFCLTCAAYPTSDVTIETHKEEEL 460
            E E    DD FILDAAEEAG+DLPYSCRAGACS+C G++V G V              + F LTC AYP SD  I THKE EL
Sbjct:   15 ENEFEVQDDQFILDAAEEAGVDLPYSCRAGACSTCAGQIVKGQVDQSEGSFLEDDHFEKGFVLTCVAYPQSDCVIHTHKETEL 97          

HSP 2 Score: 23.483 bits (49), Expect = 2.641e-20
Identity = 10/12 (83.33%), Postives = 10/12 (83.33%), Query Frame = 1
Query:  175 ATYKVKLITPEG 210
            A YKVKLI PEG
Sbjct:    2 AVYKVKLIGPEG 13          
BLAST of EY665416 vs. ExPASy Swiss-Prot
Match: FER_BRYMA (Ferredoxin OS=Bryopsis maxima PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.649e-20
Identity = 45/85 (52.94%), Postives = 58/85 (68.24%), Query Frame = 2
Query:  212 EEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVXXXXXXXXXXXXIGERFCLTCAAYPTSDVTIETHKEEELAG 466
            E  I+C +DSFILD AEE G+D+P+SCR+G+CS+C GK+  GTV            + E + LTC AYPTSD TI TH+EEE+ G
Sbjct:   14 EAVIDCDEDSFILDVAEEEGIDIPFSCRSGSCSTCAGKIEGGTVDQSEQTFLDDDQMEEGYVLTCVAYPTSDCTILTHQEEEMIG 98          
BLAST of EY665416 vs. ExPASy Swiss-Prot
Match: FER1_EQUTE (Ferredoxin-1 OS=Equisetum telmateia PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.649e-20
Identity = 50/84 (59.52%), Postives = 58/84 (69.05%), Query Frame = 2
Query:  209 GEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVXXXXXXXXXXXXIGERFCLTCAAYPTSDVTIETHKEEEL 460
            GE  ++ P+ + ILDAAEEAG DLP+SCRAGACSSC GKVVSG+V            + E F LTC A P SD+ IETHKEEEL
Sbjct:   11 GEFTLDVPEGTTILDAAEEAGYDLPFSCRAGACSSCLGKVVSGSVDQSEGSFLDDGQMEEGFVLTCIAIPESDLVIETHKEEEL 94          
BLAST of EY665416 vs. ExPASy Swiss-Prot
Match: FER1_EQUAR (Ferredoxin-1 OS=Equisetum arvense PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.649e-20
Identity = 50/84 (59.52%), Postives = 58/84 (69.05%), Query Frame = 2
Query:  209 GEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVXXXXXXXXXXXXIGERFCLTCAAYPTSDVTIETHKEEEL 460
            GE  ++ P+ + ILDAAEEAG DLP+SCRAGACSSC GKVVSG+V            + E F LTC A P SD+ IETHKEEEL
Sbjct:   11 GEFTLDVPEGTTILDAAEEAGYDLPFSCRAGACSSCLGKVVSGSVDESEGSFLDDGQMEEGFVLTCIAIPESDLVIETHKEEEL 94          
BLAST of EY665416 vs. ExPASy Swiss-Prot
Match: FER_SYNLI (Ferredoxin OS=Synechococcus lividus PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 5.815e-20
Identity = 46/84 (54.76%), Postives = 55/84 (65.48%), Query Frame = 2
Query:  209 GEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVXXXXXXXXXXXXIGERFCLTCAAYPTSDVTIETHKEEEL 460
            GE  I+ P+D +ILD AEE GLDLP+SCRAGACS+C GK++ G V            I + F LTC AYP SD  I TH+EEEL
Sbjct:   13 GETTIDVPEDEYILDVAEEQGLDLPFSCRAGACSTCAGKLLEGEVDQSDQSFLDDDQIEKGFVLTCVAYPRSDCKILTHQEEEL 96          

HSP 2 Score: 23.8682 bits (50), Expect = 5.815e-20
Identity = 9/13 (69.23%), Postives = 11/13 (84.62%), Query Frame = 1
Query:  172 MATYKVKLITPEG 210
            MATYKV L+ P+G
Sbjct:    1 MATYKVTLVRPDG 13          
BLAST of EY665416 vs. ExPASy Swiss-Prot
Match: FER_PORYE (Ferredoxin OS=Porphyra yezoensis GN=petF PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 6.225e-20
Identity = 49/93 (52.69%), Postives = 60/93 (64.52%), Query Frame = 2
Query:  197 LHLRGEEE-----INCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVXXXXXXXXXXXXIGERFCLTCAAYPTSDVTIETHKEEEL 460
            +HL  EEE      NC +D++ILDAAEE G++LPYSCRAGACS+C GKV  GTV            +   + LTC AYP+SD TI TH E+EL
Sbjct:    6 IHLLCEEEGIDVTFNCAEDTYILDAAEEEGIELPYSCRAGACSTCAGKVTEGTVDQADQSFLDDDQLLAGYVLTCIAYPSSDCTISTHVEQEL 98          
BLAST of EY665416 vs. ExPASy Swiss-Prot
Match: FER_PHYPA (Ferredoxin, chloroplastic OS=Physcomitrella patens GN=PETF PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 7.323e-20
Identity = 42/83 (50.60%), Postives = 50/83 (60.24%), Query Frame = 2
Query:  212 EEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVXXXXXXXXXXXXIGERFCLTCAAYPTSDVTIETHKEEEL 460
            E    C D+ + LDAAE AG+DLPYSCRAGACSSC G + +G V            I + F LTC AYP SD  I TH+EE +
Sbjct:   63 ENVXECSDEEYXLDAAERAGMDLPYSCRAGACSSCAGIIKAGEVDQSDQSFLDDSQIDDGFVLTCVAYPASDCIIXTHQEENM 145          

HSP 2 Score: 29.6462 bits (65), Expect = 7.323e-20
Identity = 14/30 (46.67%), Postives = 17/30 (56.67%), Query Frame = 1
Query:  133 FGLKANRGGRVVAMATYKVKLITPEGRGRN 222
            FGLK+   GR+  MATYKV  +  E    N
Sbjct:   35 FGLKSRSMGRLTCMATYKVTFLDGETGAEN 64          
BLAST of EY665416 vs. ExPASy Swiss-Prot
Match: FER_PORPU (Ferredoxin OS=Porphyra purpurea GN=petF PE=3 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 4.035e-19
Identity = 47/93 (50.54%), Postives = 61/93 (65.59%), Query Frame = 2
Query:  197 LHLRGEEE-----INCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVXXXXXXXXXXXXIGERFCLTCAAYPTSDVTIETHKEEEL 460
            +HL  E+E      +C +D++ILDAAEEAG++LPYSCRAGACS+C GKV  G+V            + + + LTC AYP SD TI TH E+EL
Sbjct:    6 IHLLSEDEGIDVTFDCSEDTYILDAAEEAGIELPYSCRAGACSTCAGKVTEGSVDQSDQSFLDDEQLLKGYVLTCIAYPESDCTILTHVEQEL 98          
The following BLAST results are available for this feature:
BLAST of EY665416 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER1_DUNSA1.638e-2058.33Ferredoxin-1 OS=Dunaliella salina PE=1 SV=1[more]
FER1_PLEBO2.139e-2058.75Ferredoxin-1 OS=Plectonema boryanum GN=petF1 PE=3 ... [more]
FER2_RAPSA2.641e-2056.63Ferredoxin, root R-B2 OS=Raphanus sativus PE=1 SV=... [more]
FER_BRYMA3.649e-2052.94Ferredoxin OS=Bryopsis maxima PE=1 SV=1[more]
FER1_EQUTE3.649e-2059.52Ferredoxin-1 OS=Equisetum telmateia PE=1 SV=1[more]
FER1_EQUAR3.649e-2059.52Ferredoxin-1 OS=Equisetum arvense PE=1 SV=1[more]
FER_SYNLI5.815e-2054.76Ferredoxin OS=Synechococcus lividus PE=1 SV=2[more]
FER_PORYE6.225e-2052.69Ferredoxin OS=Porphyra yezoensis GN=petF PE=3 SV=1[more]
FER_PHYPA7.323e-2050.60Ferredoxin, chloroplastic OS=Physcomitrella patens... [more]
FER_PORPU4.035e-1950.54Ferredoxin OS=Porphyra purpurea GN=petF PE=3 SV=2[more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-007-F10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665416 ID=EY665416; Name=EY665416; organism=Citrus sinensis; type=EST; length=1026bp
CAACTGTCCCTTCCTTGAGCAAGAGCAGCAACCATGGCCACCCTCTCAAG
CGCCATGGTCAGCACCTCATTCATCAGAAGCAAGCCTACAGCGACCAGCC
TCAAAGCCATGCCTAACATGGGTCAGGCTATATTTGGCCTCAAAGCCAAC
AGAGGTGGCCGTGTTGTAGCCATGGCTACATACAAAGTCAAGCTCATTAC
ACCTGAGGGGAGAGGAAGAAATCAACTGTCCTGATGACTCGTTTATTCTT
GATGCTGCTGAAGAAGCTGGGCTTGATCTTCCGTACTCATGCAGGGCTGG
GGCTTGCTCTTCCTGTACTGGGAAAGTTGTGTCTGGAACCGTTGACCAGT
CGGAGCAAAGCTCTCTGGATGATGATCAAATTGGAGAAAGGTTTTGTCTC
ACTTGTGCTGCTTATCCAACAAGTGATGTTACTATAGAGACTCACAAGGA
AGAGGAGCTCGCTGGTTATAATGTGCTCTTGAATCTCATAATATCTTCTC
TTTATGTGTTGTGTTTTGCTGATAATTTTATGCTTTGAAAGGAAATTGAG
TATTTGAGAAGATTCTGGAATGTGTTTTTATTCTTGTTGCAAAAAATTGT
TGAATTGCACCGGCCAGAATGCCCTCGACCTAAAAGGGGAGTTCCCCTCC
ATCCAAACTGGTACCTTTCAAATTAAAATTCAACAAAAACAAAATTTTCC
GATAAAAAATCCACAGATAAAAAAACAATAAAAAGATTGTAAAGAATGAA
GATGACGAGAAAAATGAAGTGAACCATGGACGTTGATGATGAAAAGAGAT
GGGGGGGGGGGGGCCTAGGAGAAATAAGGAGGGGGGGGTTCTCTCTTTAT
ATCCTATACATAACGTGGTATTGACGGGGGGGACCCTGTTCACATCCCCA
ATGAACACTTCTCAGGATAAAAAACCCCAAACTCCAATTACAAGTGGAAA
ACCCCTTGAATTATGGGAGGTCGTTATTACATATATCTGTCTTTTTTTCT
GCAANATAATAAGGAGTGTAAATATA
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