EY665404

Overview
NameEY665404
Unique NameEY665404
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1039
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY665404_ssr928 microsatellite EY665404_ssr928:928..937. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of EY665404 vs. ExPASy Swiss-Prot
Match: TFB2_DEBHA (RNA polymerase II transcription factor B subunit 2 OS=Debaryomyces hansenii GN=TFB2 PE=3 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 8.602e-17
Identity = 59/206 (28.64%), Postives = 95/206 (46.12%), Query Frame = 2 
Query:   11 FIPTKLATNLSMSLTDSSARK---------------------------EGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV-----------------------------------------ADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFES 424
            F PT+LAT L+   +DS+A K                           +G I++ETNF++YAY+ S L   IL LF  ++ +  N++ G IT+ES+ NA  NGITA+QII FL+ +AH ++                                           ++  +P  V DQI+LW+ +L+R++    + + +F S+  FE+
Sbjct:  272 FYPTRLATTLT---SDSAALKSPSMAMEQALESTTETEEQQNLASNSNQGTIILETNFKIYAYTNSPLEIAILNLFVHLKTRFSNMVCGQITRESIRNALYNGITADQIIKFLETHAHSQMKILAKERLDKKIEFDTSNNINTAGGAPQSQMMTNENGTTVAQHKLEVLPPTVVDQIKLWQLELDRIQTFEGYLFKDFASQQEFEA 474
The following BLAST results are available for this feature:
BLAST of EY665404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
TFB2_DEBHA8.602e-1728.64RNA polymerase II transcription factor B subunit 2... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-007-E07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665404 ID=EY665404; Name=EY665404; organism=Citrus sinensis; type=EST; length=1039bp
AGAGAATTGGTTTATACCTACTAAATTAGCTACCAATCTTTCAATGAGCT
TAACTGATTCATCAGCACGGAAAGAGGGATTTATTGTAGTGGAAACAAAC
TTCAGGATGTATGCTTATTCAACATCTAAGCTACACTGTGAAATTTTGCG
TCTTTTCTCAAAGGTAGAGTATCAACTTCCAAACCTTATAGTTGGAGCAA
TAACCAAAGAAAGCTTGTATAATGCTTTTGAGAATGGGATTACTGCTGAG
CAGATAATTAGTTTTCTTCAGCAAAATGCACATCCTCGGGTTGCTGACAG
AATGCCATCCGTACCAGAAAATGTCTGTGATCAGATAAGATTGTGGGAAT
CAGATCTGAATAGGGTTGAGATGACCCCTGCTCATTATTATGATGAGTTT
CCCTCTAGGGATGTCTTTGAAAGCTGCTTGTGACTATGCAAGAGATCAAA
GTGGTTTGCTATGGGAGGATCCAAAGAAAATGCGTCTAGTCGTTAAAGCA
AAAATTCACATGCACATGAAAGAGTCCCTTCGGGGTCAAAACAAGTAAAA
AGATATGTTTTCTTGGACCTGCCAAAACTTAATGAAACAAAAAAGATGGA
CAGGCCTGGTCTTGGTTGGGGAGGGTTGCAGGGTAACCTTTGTTAAAATT
TGGAAATTTTTTTTTTTTTTTTGGGCCCAATTTTGATTCGGCTTTAAAAC
TTCCCAAAAGGATTTTTCCCAAAATTCTTTGAAAAACCAAAAAGGGGAAA
AAAAAAAAAAAACAAAAATTTTTTTTTCCCCCCCGAAAAAAAAAAAAGAG
GGGGGGGTGTGAAAAGTCCCCGGGAAAAAACCTTCTCTTTATCCCCCCAA
ATTTGGGGGGGGGGAAAGAGGTTCCCCCTAAAAAAAAAAAAGAAGAAAAA
AAAGAAAAAAAGGGGGTTTGGTGTTTTTCTCTCTCTCCCGTGGAAATCTT
TTTTTAATTTTTTTAATTTTTTAAATTTTTAAAAATTATTCACGGAAAAA
AAAGAGGGAAAAAAAAGAGAAGGGGGGAGAAAATTGTCT
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