EY665401

Overview
NameEY665401
Unique NameEY665401
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length984
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665401 vs. ExPASy Swiss-Prot
Match: PUB11_ARATH (U-box domain-containing protein 11 OS=Arabidopsis thaliana GN=PUB11 PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 4.219e-18
Identity = 49/105 (46.67%), Postives = 63/105 (60.00%), Query Frame = 3
Query:   45 IPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRRLIQDWCVAN---RSFGVQRIPTPKQPAEPSLVRTLLNQASSES 350
            IP  F CP+SLELM DPV V TGQTY+R  I+ W+  GN TCP T+  L +FTL PN+ LR LI  WC  +   +  G     T K   + S++R L+ + SS S
Sbjct:  241 IPVDFLCPVSLELMKDPVIVATGQTYERAYIQRWIDCGNLTCPKTQQKLENFTLTPNYVLRSLISRWCAEHNIEQPAGYINGRT-KNSGDMSVIRALVQRLSSRS 344          
BLAST of EY665401 vs. ExPASy Swiss-Prot
Match: PUB8_ARATH (U-box domain-containing protein 8 OS=Arabidopsis thaliana GN=PUB8 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.039e-16
Identity = 48/112 (42.86%), Postives = 72/112 (64.29%), Query Frame = 3
Query:   33 LSVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFT-LIPNHTLRRLIQDWCVANRSFGVQRIPTPKQPAEPS----LVRTLLNQASSESN 353
            ++  +P  FRCPISLE+M DPV + +G T+DR SI+ W+ +GN TCP+T+ PL++   LIPNH LR LI ++  A+ S      P  +Q    S    L+ TL++Q+SS ++
Sbjct:    1 MAFDLPNDFRCPISLEIMSDPVILQSGHTFDRVSIQQWIDSGNRTCPITKLPLSETPYLIPNHALRSLILNF--AHVSLKESSRPRTQQEHSHSQSQALISTLVSQSSSNAS 110          
BLAST of EY665401 vs. ExPASy Swiss-Prot
Match: PUB27_ARATH (U-box domain-containing protein 27 OS=Arabidopsis thaliana GN=PUB27 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.039e-16
Identity = 39/72 (54.17%), Postives = 50/72 (69.44%), Query Frame = 3
Query:   30 DLSVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRRLIQDW 245
            DL + +P  FRCPISL++M  PV++CTG TYDR SI+ W+  GN TCP T   L +   IPN TL+RLI+ W
Sbjct:    5 DLCITVPTFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDGGNNTCPATMQILQNKDFIPNRTLQRLIEIW 76          
BLAST of EY665401 vs. ExPASy Swiss-Prot
Match: PUB12_ARATH (U-box domain-containing protein 12 OS=Arabidopsis thaliana GN=PUB12 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.039e-16
Identity = 48/104 (46.15%), Postives = 63/104 (60.58%), Query Frame = 3
Query:   48 PYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRRLIQDWCVANRSFGVQRIPTPKQP--AEPSLVRTLLNQASSESN 353
            P  FRCPISLELM DPV V +GQTY+R  I+ W+  G+ TCP T+  LT   + PN+ LR LI  WC +N       I  PK+P  ++PS      ++ASS S+
Sbjct:  257 PEEFRCPISLELMTDPVIVSSGQTYERECIKKWLEGGHLTCPKTQETLTSDIMTPNYVLRSLIAQWCESN------GIEPPKRPNISQPS------SKASSSSS 348          
BLAST of EY665401 vs. ExPASy Swiss-Prot
Match: PUB15_ARATH (U-box domain-containing protein 15 OS=Arabidopsis thaliana GN=PUB15 PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 1.357e-16
Identity = 43/105 (40.95%), Postives = 60/105 (57.14%), Query Frame = 3
Query:   36 SVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRRLIQDWCVANRSFGVQRIPTPKQPAEPSLVRTLLNQASSES 350
            S+ +P+ F CPI+LE+M DPV + TGQTY++ SI+ W   G+ TCP TR  L   +L PN  L+ LI  WC  N     ++  +P    E     +LL +A S S
Sbjct:  287 SLILPHEFLCPITLEIMLDPVIIATGQTYEKESIQKWFDAGHKTCPKTRQELDHLSLAPNFALKNLIMQWCEKNNFKIPEKEVSPDSQNEQKDEVSLLVEALSSS 391          
BLAST of EY665401 vs. ExPASy Swiss-Prot
Match: PUB10_ARATH (U-box domain-containing protein 10 OS=Arabidopsis thaliana GN=PUB10 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.357e-16
Identity = 39/71 (54.93%), Postives = 48/71 (67.61%), Query Frame = 3
Query:   36 SVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRRLIQDWC 248
            ++ IP  F CPISLELM DP  V TGQTY+R  I+ W+  GN +CP T+  L +FTL PN+ LR LI  WC
Sbjct:  240 NLTIPEDFLCPISLELMKDPAIVSTGQTYERSFIQRWIDCGNLSCPKTQQKLENFTLTPNYVLRSLISQWC 310          
BLAST of EY665401 vs. ExPASy Swiss-Prot
Match: PUB17_ARATH (U-box domain-containing protein 17 OS=Arabidopsis thaliana GN=PUB17 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.773e-16
Identity = 45/109 (41.28%), Postives = 62/109 (56.88%), Query Frame = 3
Query:   30 DLSVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRRLIQDWCVANR-SFGVQRIPTPKQPAEPSLVRTLLNQASSESN 353
            D  + +P  F CPISL+LM DPV + TGQTYDR SI  W+  G+ TCP T   L D  ++PN  L+ LI  WC A+  S+  +   +P +    S    L  +A+ E+N
Sbjct:  300 DTFITVPKDFVCPISLDLMTDPVIISTGQTYDRNSIARWIEEGHCTCPKTGQMLMDSRIVPNRALKNLIVQWCTASGISYESEFTDSPNE----SFASALPTKAAVEAN 404          
BLAST of EY665401 vs. ExPASy Swiss-Prot
Match: PUB3_ARATH (U-box domain-containing protein 3 OS=Arabidopsis thaliana GN=PUB3 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 2.315e-16
Identity = 39/74 (52.70%), Postives = 50/74 (67.57%), Query Frame = 3
Query:   39 VQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRRLIQDWCVANR 260
            + IP +FRCP+S ELM DPV V +GQT+DR SI+ W+  G   CP TR  LT   LIPN+T++ +I  W  ANR
Sbjct:  236 ISIPPYFRCPLSTELMLDPVIVASGQTFDRTSIKKWLDNGLAVCPRTRQVLTHQELIPNYTVKAMIASWLEANR 309          
BLAST of EY665401 vs. ExPASy Swiss-Prot
Match: PUB16_ARATH (U-box domain-containing protein 16 OS=Arabidopsis thaliana GN=PUB16 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 3.023e-16
Identity = 39/68 (57.35%), Postives = 47/68 (69.12%), Query Frame = 3
Query:   45 IPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRRLIQDWC 248
            IP  FRCPI+LELM DPV V TGQTYDR SI+ W+ +G+ TCP T   L   +L+PN  L+ LI  WC
Sbjct:  274 IPADFRCPITLELMRDPVVVATGQTYDRESIDLWIQSGHNTCPKTGQVLKHTSLVPNRALKNLIVLWC 341          
BLAST of EY665401 vs. ExPASy Swiss-Prot
Match: PUB14_ARATH (U-box domain-containing protein 14 OS=Arabidopsis thaliana GN=PUB14 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 6.736e-16
Identity = 39/71 (54.93%), Postives = 49/71 (69.01%), Query Frame = 3
Query:   45 IPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRRLIQDWCVAN 257
            IP +FRCPISLELM DPV V TGQTY+R SI+ W+  G+ TCP ++  L    L PN+ L+ LI  WC +N
Sbjct:  248 IPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESN 318          
The following BLAST results are available for this feature:
BLAST of EY665401 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
PUB11_ARATH4.219e-1846.67U-box domain-containing protein 11 OS=Arabidopsis ... [more]
PUB8_ARATH1.039e-1642.86U-box domain-containing protein 8 OS=Arabidopsis t... [more]
PUB27_ARATH1.039e-1654.17U-box domain-containing protein 27 OS=Arabidopsis ... [more]
PUB12_ARATH1.039e-1646.15U-box domain-containing protein 12 OS=Arabidopsis ... [more]
PUB15_ARATH1.357e-1640.95U-box domain-containing protein 15 OS=Arabidopsis ... [more]
PUB10_ARATH1.357e-1654.93U-box domain-containing protein 10 OS=Arabidopsis ... [more]
PUB17_ARATH1.773e-1641.28U-box domain-containing protein 17 OS=Arabidopsis ... [more]
PUB3_ARATH2.315e-1652.70U-box domain-containing protein 3 OS=Arabidopsis t... [more]
PUB16_ARATH3.023e-1657.35U-box domain-containing protein 16 OS=Arabidopsis ... [more]
PUB14_ARATH6.736e-1654.93U-box domain-containing protein 14 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-007-E03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665401 ID=EY665401; Name=EY665401; organism=Citrus sinensis; type=EST; length=984bp
AAAACATGCCCGGAAGCTTAGAGCCGTTGGATTTGAGCGTTCAGATACCT
TATCATTTCCGCTGTCCGATCTCCCTCGAGCTGATGTGTGACCCCGTCAC
GGTCTGCACCGGTCAGACCTACGACCGGCCCAGCATCGAGTCGTGGGTCG
CCACCGGCAACACCACCTGCCCTGTCACCCGCTCCCCACTCACCGACTTC
ACTCTCATCCCCAACCACACCCTCCGCCGGCTCATCCAAGACTGGTGCGT
CGCGAACCGTTCTTTCGGCGTCCAACGAATCCCGACCCCGAAGCAACCGG
CCGAACCGAGTCTGGTCAGAACTCTGCTGAACCAGGCCTCCTCCGAGTCG
AACACTTACGGCTCCCGCTTGTCGGCCCTCCGTCGACTCAGAGGTCTCGC
CCGTGACTCTGACAAGATTCGTTCTCTCATTTCATCTTCCAACGTTCGAA
CGATATTTAGCCAGGTCTTTTTTTCGAATATAAATGTAAAAACGGCGTCC
CCTCCAAAGTTGGCGCCGAAGTCATTAACTTTGCTGGGCCTGGTTTCCCC
CTCACTGAGACGGAATGCATGGGAAATAGCCAGGGACCCGGAAAAAAAAT
TTCAAGCCTTGTCAAGTTTTATTTTTCCACTCCCTCAATACAAAATCCCG
GGTTAAATCCCCCGGCTTCGAAAAAAAAATTTGTTCTTTACCCGGGCATG
GAAATCTCAAAAAGTTTCGGGGCCCTAATTACTTTTATTTTTGGAAAAAA
TTTTTTCAAAAGGGGGGGGTGTCCCAATTTTTAAAAAAAAATTTTTTTTT
TTTCATATTCCCCCGGGGGGGCCCCAAAAAGGGGGGAGGGAAAAAAAGGG
GCCCTTTTTTCCCCCCCTTTTGTGTCCCTGGGTGGAAAAAAAAAAAAAAC
AAGCCGAAAAAAAAAAGGAGAGGTGGGGGGGGGGCGGCCCCAGAGAAAGG
GGGCGGGGAGGAAGAAAAACACAAGTGTGTGGGG
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