EY665401

Overview
NameEY665401
Unique NameEY665401
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length984
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665401 vs. ExPASy Swiss-Prot
Match: PUB18_ARATH (U-box domain-containing protein 18 OS=Arabidopsis thaliana GN=PUB18 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.553e-12
Identity = 33/65 (50.77%), Postives = 43/65 (66.15%), Query Frame = 3
Query:   63 CPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRRLIQDWCVAN 257
            CPISLE+M DPV + TG TYDR SI  W  +GN TCP+T   LT   L+ N ++R++I+  C  N
Sbjct:  294 CPISLEIMTDPVVIETGHTYDRSSITKWFGSGNITCPITGKILTSTELVDNVSVRQVIRKHCKTN 358          
BLAST of EY665401 vs. ExPASy Swiss-Prot
Match: PUB5_ARATH (U-box domain-containing protein 5 OS=Arabidopsis thaliana GN=PUB5 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 4.518e-12
Identity = 29/71 (40.85%), Postives = 44/71 (61.97%), Query Frame = 3
Query:   45 IPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRRLIQDWCVAN 257
            +P  F+C +S  +M DPV + +G T++R  I+ W   GN +CP+++  L DFTL PN  L+  I +WC  N
Sbjct:  181 LPEKFKCTLSRTVMYDPVIISSGNTFERMQIQKWFDEGNDSCPISKRKLDDFTLKPNVELKSQISEWCAKN 251          
BLAST of EY665401 vs. ExPASy Swiss-Prot
Match: PUB54_ARATH (U-box domain-containing protein 54 OS=Arabidopsis thaliana GN=PUB54 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.901e-12
Identity = 30/70 (42.86%), Postives = 42/70 (60.00%), Query Frame = 3
Query:   57 FRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRRLIQDWCVANRSF 266
            F+CPIS+E+M DP     G TY+      W+ +G  T P T  PL +  L+PNHTLR +I+DW   N ++
Sbjct:  237 FKCPISMEIMRDPHVAADGFTYEAEEFRKWLRSGGRTSPKTNKPLENHNLVPNHTLRIIIKDWLEKNPNY 306          
BLAST of EY665401 vs. ExPASy Swiss-Prot
Match: PUB19_ARATH (U-box domain-containing protein 19 OS=Arabidopsis thaliana GN=PUB19 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.006e-11
Identity = 32/66 (48.48%), Postives = 43/66 (65.15%), Query Frame = 3
Query:   60 RCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRRLIQDWCVAN 257
            RCPISLE+M DPV + +G TYDR SI  W A+GN TCP T   L    L+ N +++++IQ +   N
Sbjct:  283 RCPISLEIMSDPVVLESGHTYDRSSITKWFASGNITCPKTGKTLVSTVLVDNFSVKQVIQSYSKQN 348          
BLAST of EY665401 vs. ExPASy Swiss-Prot
Match: PUB48_ARATH (U-box domain-containing protein 48 OS=Arabidopsis thaliana GN=PUB48 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.995e-11
Identity = 30/75 (40.00%), Postives = 45/75 (60.00%), Query Frame = 3
Query:   36 SVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRRLIQDWCVANR 260
            SV++P  F+C +S  +M DPV + +GQTY++  I  W+   + TCP  +  L    L PNH +  LI  WC+AN+
Sbjct:   71 SVEVPKEFKCTLSKTIMIDPVIIFSGQTYEKRYITEWL-NHDLTCPTAKQVLYRVCLTPNHLINELITRWCLANK 144          
BLAST of EY665401 vs. ExPASy Swiss-Prot
Match: PUB32_ARATH (U-box domain-containing protein 32 OS=Arabidopsis thaliana GN=PUB32 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.995e-11
Identity = 30/66 (45.45%), Postives = 39/66 (59.09%), Query Frame = 3
Query:   48 PYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRRLIQDW 245
            P H+ CPI  E+M DP+    G TY+  +I  W+A G+ T P+T   + D  LIPNH L   IQDW
Sbjct:  736 PSHYLCPIFQEVMKDPLIAADGFTYEAEAIREWLANGHDTSPMTNLKMEDCNLIPNHALHLAIQDW 801          
The following BLAST results are available for this feature:
BLAST of EY665401 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
PUB18_ARATH1.553e-1250.77U-box domain-containing protein 18 OS=Arabidopsis ... [more]
PUB5_ARATH4.518e-1240.85U-box domain-containing protein 5 OS=Arabidopsis t... [more]
PUB54_ARATH5.901e-1242.86U-box domain-containing protein 54 OS=Arabidopsis ... [more]
PUB19_ARATH1.006e-1148.48U-box domain-containing protein 19 OS=Arabidopsis ... [more]
PUB48_ARATH4.995e-1140.00U-box domain-containing protein 48 OS=Arabidopsis ... [more]
PUB32_ARATH4.995e-1145.45U-box domain-containing protein 32 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-007-E03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665401 ID=EY665401; Name=EY665401; organism=Citrus sinensis; type=EST; length=984bp
AAAACATGCCCGGAAGCTTAGAGCCGTTGGATTTGAGCGTTCAGATACCT
TATCATTTCCGCTGTCCGATCTCCCTCGAGCTGATGTGTGACCCCGTCAC
GGTCTGCACCGGTCAGACCTACGACCGGCCCAGCATCGAGTCGTGGGTCG
CCACCGGCAACACCACCTGCCCTGTCACCCGCTCCCCACTCACCGACTTC
ACTCTCATCCCCAACCACACCCTCCGCCGGCTCATCCAAGACTGGTGCGT
CGCGAACCGTTCTTTCGGCGTCCAACGAATCCCGACCCCGAAGCAACCGG
CCGAACCGAGTCTGGTCAGAACTCTGCTGAACCAGGCCTCCTCCGAGTCG
AACACTTACGGCTCCCGCTTGTCGGCCCTCCGTCGACTCAGAGGTCTCGC
CCGTGACTCTGACAAGATTCGTTCTCTCATTTCATCTTCCAACGTTCGAA
CGATATTTAGCCAGGTCTTTTTTTCGAATATAAATGTAAAAACGGCGTCC
CCTCCAAAGTTGGCGCCGAAGTCATTAACTTTGCTGGGCCTGGTTTCCCC
CTCACTGAGACGGAATGCATGGGAAATAGCCAGGGACCCGGAAAAAAAAT
TTCAAGCCTTGTCAAGTTTTATTTTTCCACTCCCTCAATACAAAATCCCG
GGTTAAATCCCCCGGCTTCGAAAAAAAAATTTGTTCTTTACCCGGGCATG
GAAATCTCAAAAAGTTTCGGGGCCCTAATTACTTTTATTTTTGGAAAAAA
TTTTTTCAAAAGGGGGGGGTGTCCCAATTTTTAAAAAAAAATTTTTTTTT
TTTCATATTCCCCCGGGGGGGCCCCAAAAAGGGGGGAGGGAAAAAAAGGG
GCCCTTTTTTCCCCCCCTTTTGTGTCCCTGGGTGGAAAAAAAAAAAAAAC
AAGCCGAAAAAAAAAAGGAGAGGTGGGGGGGGGGCGGCCCCAGAGAAAGG
GGGCGGGGAGGAAGAAAAACACAAGTGTGTGGGG
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