CV884662

Overview
NameCV884662
Unique NameCV884662
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length619
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: NRAM1_CANFA (Natural resistance-associated macrophage protein 1 OS=Canis familiaris GN=SLC11A1 PE=2 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 3.164e-37
Identity = 83/166 (50.00%), Postives = 107/166 (64.46%), Query Frame = 2
Query:  128 SGSKDSNETNR--LLPIPSPPSSTEDDEEVAFDS-REKILIVDADSASTLNVDGDQVPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAIA 616
            +G KD    +R     I  PPSS    E +      EKI I D +  +           FS +KLW FTGPGFLMSIAFLDPGN+E DLQ+GA+AG+ LLW+L+WAT++GLL Q L+AR+GV TG+ L E+C   YP   R +LW   E+A++G+D QEVIG+AIA
Sbjct:    2 TGDKDPQSVSRPNYGSISHPPSSEPQQEPLRTTYLSEKIPIPDTEPGT-----------FSLRKLWAFTGPGFLMSIAFLDPGNIESDLQAGAVAGFKLLWVLLWATVLGLLCQRLAARLGVVTGKDLGEICHLYYPKVPRTLLWLTIELAIVGSDMQEVIGTAIA 156          
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: NRAM1_CEREL (Natural resistance-associated macrophage protein 1 OS=Cervus elaphus GN=SLC11A1 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.570e-36
Identity = 74/130 (56.92%), Postives = 95/130 (73.08%), Query Frame = 2
Query:  227 EKILIVDADSASTLNVDGDQVPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAIA 616
            EKI I D +S +           FS +KLW FTGPGFLMSIAFLDPGN+E DLQ+GA+AG+ LLW+L+WAT++GLL Q L+AR+GV TG+ L E+C   YP   R +LW   E+A++G+D QEVIG+AIA
Sbjct:   38 EKIPIPDTESGA-----------FSLRKLWAFTGPGFLMSIAFLDPGNIESDLQAGAVAGFKLLWVLLWATVLGLLCQRLAARLGVVTGKDLGEVCHLYYPKVPRILLWLTIELAIVGSDMQEVIGTAIA 156          
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: NRAM1_BUBBU (Natural resistance-associated macrophage protein 1 OS=Bubalus bubalis GN=SLC11A1 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.570e-36
Identity = 74/130 (56.92%), Postives = 95/130 (73.08%), Query Frame = 2
Query:  227 EKILIVDADSASTLNVDGDQVPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAIA 616
            EKI I D +S +           FS +KLW FTGPGFLMSIAFLDPGN+E DLQ+GA+AG+ LLW+L+WAT++GLL Q L+AR+GV TG+ L E+C   YP   R +LW   E+A++G+D QEVIG+AIA
Sbjct:   38 EKIPIPDTESGA-----------FSLRKLWAFTGPGFLMSIAFLDPGNIESDLQAGAVAGFKLLWVLLWATVLGLLCQRLAARLGVVTGKDLGEVCHLYYPKVPRILLWLTIELAIVGSDMQEVIGTAIA 156          
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: NRAM1_BOVIN (Natural resistance-associated macrophage protein 1 OS=Bos taurus GN=SLC11A1 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.570e-36
Identity = 74/130 (56.92%), Postives = 95/130 (73.08%), Query Frame = 2
Query:  227 EKILIVDADSASTLNVDGDQVPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAIA 616
            EKI I D +S +           FS +KLW FTGPGFLMSIAFLDPGN+E DLQ+GA+AG+ LLW+L+WAT++GLL Q L+AR+GV TG+ L E+C   YP   R +LW   E+A++G+D QEVIG+AIA
Sbjct:   38 EKIPIPDTESGT-----------FSLRKLWAFTGPGFLMSIAFLDPGNIESDLQAGAVAGFKLLWVLLWATVLGLLCQRLAARLGVVTGKDLGEVCHLYYPKVPRILLWLTIELAIVGSDMQEVIGTAIA 156          
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: NRAM1_BISBI (Natural resistance-associated macrophage protein 1 OS=Bison bison GN=SLC11A1 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.570e-36
Identity = 74/130 (56.92%), Postives = 95/130 (73.08%), Query Frame = 2
Query:  227 EKILIVDADSASTLNVDGDQVPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAIA 616
            EKI I D +S +           FS +KLW FTGPGFLMSIAFLDPGN+E DLQ+GA+AG+ LLW+L+WAT++GLL Q L+AR+GV TG+ L E+C   YP   R +LW   E+A++G+D QEVIG+AIA
Sbjct:   38 EKIPIPDTESGT-----------FSLRKLWAFTGPGFLMSIAFLDPGNIESDLQAGAVAGFKLLWVLLWATVLGLLCQRLAARLGVVTGKDLGEVCHLYYPKVPRILLWLTIELAIVGSDMQEVIGTAIA 156          
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: NRAML_CAEEL (NRAMP-like transporter smf-1 OS=Caenorhabditis elegans GN=smf-1 PE=2 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 2.051e-36
Identity = 78/160 (48.75%), Postives = 109/160 (68.12%), Query Frame = 2
Query:  143 SNETNRLLPIPSPPSSTEDDEEVAFDSREKILIVDADSASTLNVDGDQVPP-FSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAIAI 619
            SN    + P   P   T++D        + +L  DA+S   +++  D V   FS+KKLW FTGPGFLMSIA+LDPGN+E DLQSGA A Y LLW+L+ A ++G+L+Q +SAR+GV +G+H+AE+  + YP   R +LW M E+A++ +D QEVIG+AIAI
Sbjct:    4 SNNDGPIEPEAEPWRITQNDH-----LEQDLLEEDAESQERVDIPVDDVEKAFSFKKLWAFTGPGFLMSIAYLDPGNIESDLQSGAQAAYKLLWVLLSAHIIGMLLQRMSARLGVVSGKHMAEVAYQFYPRLPRIILWLMIEIAIVCSDMQEVIGTAIAI 158          
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: NRAM1_SHEEP (Natural resistance-associated macrophage protein 1 OS=Ovis aries GN=SLC11A1 PE=2 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 2.679e-36
Identity = 74/130 (56.92%), Postives = 95/130 (73.08%), Query Frame = 2
Query:  227 EKILIVDADSASTLNVDGDQVPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAIA 616
            EKI I D +S +           FS +KLW FTGPGFLMSIAFLDPGN+E DLQ+GA+AG+ LLW+L+WAT++GLL Q L+AR+GV TG+ L E+C   YP   R +LW   E+A++G+D QEVIG+AIA
Sbjct:   38 EKIPIPDTESGA-----------FSLRKLWAFTGPGFLMSIAFLDPGNIESDLQAGAVAGFKLLWVLLWATVLGLLCQRLAARLGVVTGKDLGEVCHLYYPKVPRTLLWLTIELAIVGSDMQEVIGTAIA 156          
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: NRAM1_HUMAN (Natural resistance-associated macrophage protein 1 OS=Homo sapiens GN=SLC11A1 PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.499e-36
Identity = 69/107 (64.49%), Postives = 87/107 (81.31%), Query Frame = 2
Query:  296 FSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAIA 616
            FS +KLW FTGPGFLMSIAFLDPGN+E DLQ+GA+AG+ LLW+L+WAT++GLL Q L+AR+GV TG+ L E+C   YP   R VLW   E+A++G+D QEVIG+AIA
Sbjct:   53 FSLRKLWAFTGPGFLMSIAFLDPGNIESDLQAGAVAGFKLLWVLLWATVLGLLCQRLAARLGVVTGKDLGEVCHLYYPKVPRTVLWLTIELAIVGSDMQEVIGTAIA 159          
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: NRAM1_MOUSE (Natural resistance-associated macrophage protein 1 OS=Mus musculus GN=Slc11a1 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 5.968e-36
Identity = 73/130 (56.15%), Postives = 94/130 (72.31%), Query Frame = 2
Query:  227 EKILIVDADSASTLNVDGDQVPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAIA 616
            EKI I  AD  +           FS +KLW FTGPGFLMSIAFLDPGN+E DLQ+GA+AG+ LLW+L+WAT++GLL Q L+AR+GV TG+ L E+C   YP   R +LW   E+A++G+D QEVIG+AI+
Sbjct:   38 EKIPIPSADQGT-----------FSLRKLWAFTGPGFLMSIAFLDPGNIESDLQAGAVAGFKLLWVLLWATVLGLLCQRLAARLGVVTGKDLGEVCHLYYPKVPRILLWLTIELAIVGSDMQEVIGTAIS 156          
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: NRAM1_PIG (Natural resistance-associated macrophage protein 1 OS=Sus scrofa GN=SLC11A1 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.268e-35
Identity = 75/150 (50.00%), Postives = 101/150 (67.33%), Query Frame = 2
Query:  167 PIPSPPSSTEDDEEVAFDSREKILIVDADSASTLNVDGDQVPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAIA 616
            P P PP        ++    EKI I +A+  +           FS +KLW FTGPGFLMSIA+LDPGN++ DLQ+GA+AG+ LLW+L+WAT++GLL Q L+AR+GV TG+ L E+C   YP   R +LW   E+A++G+D QEVIG+AIA
Sbjct:   22 PSPGPPQVPPGGTYLS----EKIPIPNAEPGT-----------FSLRKLWAFTGPGFLMSIAYLDPGNIQSDLQAGAVAGFKLLWVLLWATVLGLLCQRLAARLGVVTGKDLGEICHLYYPKVPRTLLWLNMELAIVGSDMQEVIGTAIA 156          
The following BLAST results are available for this feature:
BLAST of CV884662 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
NRAM1_CANFA3.164e-3750.00Natural resistance-associated macrophage protein 1... [more]
NRAM1_CEREL1.570e-3656.92Natural resistance-associated macrophage protein 1... [more]
NRAM1_BUBBU1.570e-3656.92Natural resistance-associated macrophage protein 1... [more]
NRAM1_BOVIN1.570e-3656.92Natural resistance-associated macrophage protein 1... [more]
NRAM1_BISBI1.570e-3656.92Natural resistance-associated macrophage protein 1... [more]
NRAML_CAEEL2.051e-3648.75NRAMP-like transporter smf-1 OS=Caenorhabditis ele... [more]
NRAM1_SHEEP2.679e-3656.92Natural resistance-associated macrophage protein 1... [more]
NRAM1_HUMAN3.499e-3664.49Natural resistance-associated macrophage protein 1... [more]
NRAM1_MOUSE5.968e-3656.15Natural resistance-associated macrophage protein 1... [more]
NRAM1_PIG2.268e-3550.00Natural resistance-associated macrophage protein 1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008G10_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T3_G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884662 ID=CV884662; Name=CV884662; organism=Citrus sinensis; type=EST; length=619bp
GACCGTTTTCACCAGTCCTCAGAGGTGAGATCTGTGGAACAGAATCTACT
GCCGAGTTTGGAATATTCCGTGCGTAGATAAAACAAAGAAAGTGAAAATG
GACTCCTCCGAAACCCGAGAAGAAGAAAGCGGGTCCAAAGACAGCAATGA
AACCAACCGCCTCCTTCCAATACCGTCACCACCGTCCTCAACGGAGGACG
ACGAGGAAGTCGCGTTCGATTCACGAGAGAAAATCTTGATCGTCGACGCA
GATTCAGCCTCCACGTTGAACGTTGACGGTGACCAAGTGCCGCCTTTTTC
GTGGAAAAAGCTTTGGTTATTCACTGGACCCGGTTTCTTAATGAGCATAG
CGTTTCTGGATCCGGGGAATCTGGAGGGGGATCTCCAATCGGGGGCGATA
GCAGGGTACTCGCTTCTTTGGTTGCTAATGTGGGCCACCCTCATGGGCTT
GCTTATTCAGCTGCTGTCGGCACGAGTAGGGGTGGCCACGGGGCGTCACT
TGGCAGAGCTGTGTAGAGAGGAGTACCCCAATTGGGCGCGATTCGTGTTG
TGGTTCATGGCTGAAGTGGCCTTGATTGGTGCCGATTTTCAGGAAGTAAT
TGGGAGTGCCATTGCTATC
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