CV884662

Overview
NameCV884662
Unique NameCV884662
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length619
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: SMF1_YEAST (Manganese transporter SMF1 OS=Saccharomyces cerevisiae GN=SMF1 PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.132e-17
Identity = 40/100 (40.00%), Postives = 63/100 (63.00%), Query Frame = 2
Query:  320 FTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAIAI 619
            F GPG ++S+A++DPGN    + +GA   +SLL +++ +  + + +Q L  ++G  TG  L+  CRE  P W  + L+F AE A+I  D  EVIG+AIA+
Sbjct:   79 FIGPGLMVSVAYIDPGNYSTAVDAGASNQFSLLCIILLSNFIAIFLQCLCIKLGSVTGLDLSRACREYLPRWLNWTLYFFAECAVIATDIAEVIGTAIAL 178          
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: PDT1_SCHPO (Manganese transporter pdt1 OS=Schizosaccharomyces pombe GN=pdt1 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.785e-17
Identity = 41/100 (41.00%), Postives = 64/100 (64.00%), Query Frame = 2
Query:  320 FTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAIAI 619
            F GPGFL+++A++DPGN   DL +G+   Y LL+++  + L  + +Q L  R+G  TG  LA  CRE Y  +  +  + +AE+A+I  D  EVIG+A+A+
Sbjct:   74 FIGPGFLIAVAYIDPGNYSTDLDAGSRFQYKLLFIVFLSNLFAVYLQSLCIRLGSVTGMDLARNCREHYNRYICWSFYVLAEIAIIATDIAEVIGTAVAL 173          
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: SMF3_YEAST (Iron transporter SMF3 OS=Saccharomyces cerevisiae GN=SMF3 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.103e-17
Identity = 42/105 (40.00%), Postives = 63/105 (60.00%), Query Frame = 2
Query:  305 KKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAIAI 619
            +K   F GPG L+S+A++DPGN    +  GA   Y+LL+ +  + +  +L+Q L  ++G  TG  LAE CR   P    + L+  AEVA+I  D  EV+G+AIA+
Sbjct:    9 QKFAKFIGPGILVSVAYMDPGNYATSVSGGAQYKYTLLFSIFISNIFAVLLQCLCVKLGTITGYDLAENCRHNLPKKLNYTLYLFAEVAIIATDLAEVVGTAIAL 113          
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: MNTH_LACSS (Probable manganese transport protein mntH OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=mntH PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.103e-17
Identity = 39/106 (36.79%), Postives = 67/106 (63.21%), Query Frame = 2
Query:  302 WKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAIAI 619
            WK L  F GPG L+++ ++DPGN    +  GA   Y+L+ +++ + L+ +L+Q ++AR+G+ TG  LA++ R +        LW + E+A++  D  E+IGSAIA+
Sbjct:   40 WKTLMAFMGPGALVAVGYMDPGNWITSIAGGAQFAYTLISVILVSNLIAMLLQAMAARLGIVTGMDLAQMTRAKTGKKMGIFLWIVTELAIMATDIAEIIGSAIAL 145          
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: NRAM1_RAT (Natural resistance-associated macrophage protein 1 OS=Rattus norvegicus GN=Slc11a1 PE=2 SV=3)

HSP 1 Score: 84.7297 bits (208), Expect = 4.021e-16
Identity = 37/68 (54.41%), Postives = 52/68 (76.47%), Query Frame = 2
Query:  413 LLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAIA 616
            LLW+L+WAT++GLL Q L+AR+GV TG+ L E+C   YP   R +LW   E+A++G+D QEVIG+AI+
Sbjct:   48 LLWVLLWATVLGLLCQRLAARLGVVTGKDLGEICHLYYPKVPRILLWLTIELAIVGSDMQEVIGTAIS 115          
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: MNTH_MYCLE (Probable manganese transport protein mntH OS=Mycobacterium leprae GN=mntH PE=3 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.170e-15
Identity = 38/104 (36.54%), Postives = 63/104 (60.58%), Query Frame = 2
Query:  305 KKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAIA 616
            K  W   GP F+ +IA++DPGN+  ++ SGA  GY  LW+++ A ++  L+Q LSA++G+ TG+ L +   ++  +  R   W  AE+  +  D  E++G AIA
Sbjct:   28 KTSWYLLGPAFVAAIAYVDPGNVAANVSSGAQFGYLQLWVVVVANVLAGLVQYLSAKLGLVTGQSLPQAISKQMSHPFRLGFWLQAELVAMATDVAEIVGGAIA 131          
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: MNTH_STAAR (Probable manganese transport protein mntH OS=Staphylococcus aureus (strain MRSA252) GN=mntH PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.807e-15
Identity = 41/105 (39.05%), Postives = 64/105 (60.95%), Query Frame = 2
Query:  305 KKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAIAI 619
            +K   F GPG L++  ++D GN    +Q GA  GY+LL+  + + L  +L+Q ++ R+G+ATG  LA++ R         + W +AE+A+I  D  EVIGSAIA+
Sbjct:   31 QKFLSFLGPGLLVAGGYMDSGNWITSMQGGAQYGYTLLFGNLISRLSAMLLQSMTVRLGIATGMDLAQMTRHYLSRPIAIIFWIIAELAIIATDIAEVIGSAIAL 135          
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: SMF2_YEAST (Manganese transporter SMF2 OS=Saccharomyces cerevisiae GN=SMF2 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.207e-14
Identity = 37/105 (35.24%), Postives = 63/105 (60.00%), Query Frame = 2
Query:  305 KKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAIAI 619
            +K   F GPG ++S++++DPGN    + +G+   Y LL+ ++ +  M    Q L AR+G  TG  LA+ C++  P      L+ +AE+A+I  D  EV+G+AI++
Sbjct:   55 RKYARFIGPGLMVSVSYMDPGNYSTAVAAGSAHRYKLLFSVLVSNFMAAFWQYLCARLGAVTGLDLAQNCKKHLPFGLNITLYILAEMAIIATDLAEVVGTAISL 159          
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: EIN2_ARATH (Ethylene-insensitive protein 2 OS=Arabidopsis thaliana GN=EIN2 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.435e-13
Identity = 35/97 (36.08%), Postives = 55/97 (56.70%), Query Frame = 2
Query:  329 PGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAIAI 619
            P  L+S+ ++DPG    +++ GA  GY L+ + +      +L Q ++AR+ V TG+HLA++C EEY  W    L   AE + I  D   V+G A A+
Sbjct:   24 PVLLVSVGYIDPGKWVANIEGGARFGYDLVAITLLFNFAAILCQYVAARISVVTGKHLAQICNEEYDKWTCMFLGIQAEFSAILLDLTMVVGVAHAL 120          
The following BLAST results are available for this feature:
BLAST of CV884662 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
SMF1_YEAST2.132e-1740.00Manganese transporter SMF1 OS=Saccharomyces cerevi... [more]
PDT1_SCHPO2.785e-1741.00Manganese transporter pdt1 OS=Schizosaccharomyces ... [more]
SMF3_YEAST8.103e-1740.00Iron transporter SMF3 OS=Saccharomyces cerevisiae ... [more]
MNTH_LACSS8.103e-1736.79Probable manganese transport protein mntH OS=Lacto... [more]
NRAM1_RAT4.021e-1654.41Natural resistance-associated macrophage protein 1... [more]
MNTH_MYCLE1.170e-1536.54Probable manganese transport protein mntH OS=Mycob... [more]
MNTH_STAAR5.807e-1539.05Probable manganese transport protein mntH OS=Staph... [more]
SMF2_YEAST2.207e-1435.24Manganese transporter SMF2 OS=Saccharomyces cerevi... [more]
EIN2_ARATH5.435e-1336.08Ethylene-insensitive protein 2 OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008G10_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T3_G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884662 ID=CV884662; Name=CV884662; organism=Citrus sinensis; type=EST; length=619bp
GACCGTTTTCACCAGTCCTCAGAGGTGAGATCTGTGGAACAGAATCTACT
GCCGAGTTTGGAATATTCCGTGCGTAGATAAAACAAAGAAAGTGAAAATG
GACTCCTCCGAAACCCGAGAAGAAGAAAGCGGGTCCAAAGACAGCAATGA
AACCAACCGCCTCCTTCCAATACCGTCACCACCGTCCTCAACGGAGGACG
ACGAGGAAGTCGCGTTCGATTCACGAGAGAAAATCTTGATCGTCGACGCA
GATTCAGCCTCCACGTTGAACGTTGACGGTGACCAAGTGCCGCCTTTTTC
GTGGAAAAAGCTTTGGTTATTCACTGGACCCGGTTTCTTAATGAGCATAG
CGTTTCTGGATCCGGGGAATCTGGAGGGGGATCTCCAATCGGGGGCGATA
GCAGGGTACTCGCTTCTTTGGTTGCTAATGTGGGCCACCCTCATGGGCTT
GCTTATTCAGCTGCTGTCGGCACGAGTAGGGGTGGCCACGGGGCGTCACT
TGGCAGAGCTGTGTAGAGAGGAGTACCCCAATTGGGCGCGATTCGTGTTG
TGGTTCATGGCTGAAGTGGCCTTGATTGGTGCCGATTTTCAGGAAGTAAT
TGGGAGTGCCATTGCTATC
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