CV884662

Overview
NameCV884662
Unique NameCV884662
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length619
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: MNTH2_PSEAE (Manganese transport protein mntH2 OS=Pseudomonas aeruginosa GN=mntH2 PE=3 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 4.905e-22
Identity = 48/106 (45.28%), Postives = 72/106 (67.92%), Query Frame = 2 
Query:  302 WKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAIAI 619
            W++L  F GPG+L+++ ++DPGN   D+  GA  GY LL +++ ++LM +L+Q LSAR+G+A+G  LA+ CRE Y      +LW   E A+I  D  EVIG+AIA+
Sbjct:   29 WRRLLAFAGPGYLVAVGYMDPGNWATDVAGGAQLGYLLLSVILLSSLMAMLLQALSARLGIASGLDLAQACRERYSPSTCRLLWLACETAIIACDLAEVIGTAIAL 134
[Close]
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: MNTH_SHISS (Manganese transport protein mntH OS=Shigella sonnei (strain Ss046) GN=mntH PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.366e-22
Identity = 45/96 (46.88%), Postives = 67/96 (69.79%), Query Frame = 2 
Query:  326 GPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAI 613
            GP F+ +I ++DPGN   ++Q+GA  GY LLW+++WA LM +LIQ+LSA++G+ATG++LAE  R+ YP    +  W  AE+  +  D  E IG+AI
Sbjct:   23 GPAFIAAIGYIDPGNFATNIQAGASFGYQLLWVVVWANLMAMLIQILSAKLGIATGKNLAEQIRDHYPRPVVWFYWVQAEIIAMATDLAEFIGAAI 118
[Close]
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: MNTH_SHIF8 (Manganese transport protein mntH OS=Shigella flexneri serotype 5b (strain 8401) GN=mntH PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.366e-22
Identity = 45/96 (46.88%), Postives = 67/96 (69.79%), Query Frame = 2 
Query:  326 GPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAI 613
            GP F+ +I ++DPGN   ++Q+GA  GY LLW+++WA LM +LIQ+LSA++G+ATG++LAE  R+ YP    +  W  AE+  +  D  E IG+AI
Sbjct:   23 GPAFIAAIGYIDPGNFATNIQAGASFGYQLLWVVVWANLMAMLIQILSAKLGIATGKNLAEQIRDHYPRPVVWFYWVQAEIIAMATDLAEFIGAAI 118
[Close]
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: MNTH_SHIDS (Manganese transport protein mntH OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=mntH PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.366e-22
Identity = 45/96 (46.88%), Postives = 67/96 (69.79%), Query Frame = 2 
Query:  326 GPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAI 613
            GP F+ +I ++DPGN   ++Q+GA  GY LLW+++WA LM +LIQ+LSA++G+ATG++LAE  R+ YP    +  W  AE+  +  D  E IG+AI
Sbjct:   23 GPAFIAAIGYIDPGNFATNIQAGASFGYQLLWVVVWANLMAMLIQILSAKLGIATGKNLAEQIRDHYPRPVVWFYWVQAEIIAMATDLAEFIGAAI 118
[Close]
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: MNTH_SHIBS (Manganese transport protein mntH OS=Shigella boydii serotype 4 (strain Sb227) GN=mntH PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.366e-22
Identity = 45/96 (46.88%), Postives = 67/96 (69.79%), Query Frame = 2 
Query:  326 GPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAI 613
            GP F+ +I ++DPGN   ++Q+GA  GY LLW+++WA LM +LIQ+LSA++G+ATG++LAE  R+ YP    +  W  AE+  +  D  E IG+AI
Sbjct:   23 GPAFIAAIGYIDPGNFATNIQAGASFGYQLLWVVVWANLMAMLIQILSAKLGIATGKNLAEQIRDHYPRPVVWFYWVQAEIIAMATDLAEFIGAAI 118
[Close]
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: MNTH_SHIB3 (Manganese transport protein mntH OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=mntH PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.366e-22
Identity = 45/96 (46.88%), Postives = 67/96 (69.79%), Query Frame = 2 
Query:  326 GPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAI 613
            GP F+ +I ++DPGN   ++Q+GA  GY LLW+++WA LM +LIQ+LSA++G+ATG++LAE  R+ YP    +  W  AE+  +  D  E IG+AI
Sbjct:   23 GPAFIAAIGYIDPGNFATNIQAGASFGYQLLWVVVWANLMAMLIQILSAKLGIATGKNLAEQIRDHYPRPVVWFYWVQAEIIAMATDLAEFIGAAI 118
[Close]
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: MNTH_SALTY (Manganese transport protein mntH OS=Salmonella typhimurium GN=mntH PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.366e-22
Identity = 45/96 (46.88%), Postives = 67/96 (69.79%), Query Frame = 2 
Query:  326 GPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAI 613
            GP F+ +I ++DPGN   ++Q+GA  GY LLW+++WA LM +LIQ+LSA++G+ATG++LAE  R+ YP    +  W  AE+  +  D  E IG+AI
Sbjct:   23 GPAFIAAIGYIDPGNFATNIQAGASFGYQLLWVVVWANLMAMLIQILSAKLGIATGKNLAEQIRDHYPRPVVWFYWVQAEIIAMATDLAEFIGAAI 118
[Close]
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: MNTH_SALTI (Manganese transport protein mntH OS=Salmonella typhi GN=mntH PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.366e-22
Identity = 45/96 (46.88%), Postives = 67/96 (69.79%), Query Frame = 2 
Query:  326 GPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAI 613
            GP F+ +I ++DPGN   ++Q+GA  GY LLW+++WA LM +LIQ+LSA++G+ATG++LAE  R+ YP    +  W  AE+  +  D  E IG+AI
Sbjct:   23 GPAFIAAIGYIDPGNFATNIQAGASFGYQLLWVVVWANLMAMLIQILSAKLGIATGKNLAEQIRDHYPRPVVWFYWVQAEIIAMATDLAEFIGAAI 118
[Close]
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: MNTH_SALSV (Manganese transport protein mntH OS=Salmonella schwarzengrund (strain CVM19633) GN=mntH PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.366e-22
Identity = 45/96 (46.88%), Postives = 67/96 (69.79%), Query Frame = 2 
Query:  326 GPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAI 613
            GP F+ +I ++DPGN   ++Q+GA  GY LLW+++WA LM +LIQ+LSA++G+ATG++LAE  R+ YP    +  W  AE+  +  D  E IG+AI
Sbjct:   23 GPAFIAAIGYIDPGNFATNIQAGASFGYQLLWVVVWANLMAMLIQILSAKLGIATGKNLAEQIRDHYPRPVVWFYWVQAEIIAMATDLAEFIGAAI 118
[Close]
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: MNTH_SALPK (Manganese transport protein mntH OS=Salmonella paratyphi A (strain AKU_12601) GN=mntH PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.366e-22
Identity = 45/96 (46.88%), Postives = 67/96 (69.79%), Query Frame = 2 
Query:  326 GPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAI 613
            GP F+ +I ++DPGN   ++Q+GA  GY LLW+++WA LM +LIQ+LSA++G+ATG++LAE  R+ YP    +  W  AE+  +  D  E IG+AI
Sbjct:   23 GPAFIAAIGYIDPGNFATNIQAGASFGYQLLWVVVWANLMAMLIQILSAKLGIATGKNLAEQIRDHYPRPVVWFYWVQAEIIAMATDLAEFIGAAI 118
The following BLAST results are available for this feature:
BLAST of CV884662 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
MNTH2_PSEAE4.905e-2245.28Manganese transport protein mntH2 OS=Pseudomonas a... [more]
MNTH_SHISS8.366e-2246.88Manganese transport protein mntH OS=Shigella sonne... [more]
MNTH_SHIF88.366e-2246.88Manganese transport protein mntH OS=Shigella flexn... [more]
MNTH_SHIDS8.366e-2246.88Manganese transport protein mntH OS=Shigella dysen... [more]
MNTH_SHIBS8.366e-2246.88Manganese transport protein mntH OS=Shigella boydi... [more]
MNTH_SHIB38.366e-2246.88Manganese transport protein mntH OS=Shigella boydi... [more]
MNTH_SALTY8.366e-2246.88Manganese transport protein mntH OS=Salmonella typ... [more]
MNTH_SALTI8.366e-2246.88Manganese transport protein mntH OS=Salmonella typ... [more]
MNTH_SALSV8.366e-2246.88Manganese transport protein mntH OS=Salmonella sch... [more]
MNTH_SALPK8.366e-2246.88Manganese transport protein mntH OS=Salmonella par... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008G10_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T3_G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884662 ID=CV884662; Name=CV884662; organism=Citrus sinensis; type=EST; length=619bp
GACCGTTTTCACCAGTCCTCAGAGGTGAGATCTGTGGAACAGAATCTACT
GCCGAGTTTGGAATATTCCGTGCGTAGATAAAACAAAGAAAGTGAAAATG
GACTCCTCCGAAACCCGAGAAGAAGAAAGCGGGTCCAAAGACAGCAATGA
AACCAACCGCCTCCTTCCAATACCGTCACCACCGTCCTCAACGGAGGACG
ACGAGGAAGTCGCGTTCGATTCACGAGAGAAAATCTTGATCGTCGACGCA
GATTCAGCCTCCACGTTGAACGTTGACGGTGACCAAGTGCCGCCTTTTTC
GTGGAAAAAGCTTTGGTTATTCACTGGACCCGGTTTCTTAATGAGCATAG
CGTTTCTGGATCCGGGGAATCTGGAGGGGGATCTCCAATCGGGGGCGATA
GCAGGGTACTCGCTTCTTTGGTTGCTAATGTGGGCCACCCTCATGGGCTT
GCTTATTCAGCTGCTGTCGGCACGAGTAGGGGTGGCCACGGGGCGTCACT
TGGCAGAGCTGTGTAGAGAGGAGTACCCCAATTGGGCGCGATTCGTGTTG
TGGTTCATGGCTGAAGTGGCCTTGATTGGTGCCGATTTTCAGGAAGTAAT
TGGGAGTGCCATTGCTATC
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