CV884662

Overview
NameCV884662
Unique NameCV884662
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length619
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: MNTH_SALPC (Manganese transport protein mntH OS=Salmonella paratyphi C (strain RKS4594) GN=mntH PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.366e-22
Identity = 45/96 (46.88%), Postives = 67/96 (69.79%), Query Frame = 2 
Query:  326 GPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAI 613
            GP F+ +I ++DPGN   ++Q+GA  GY LLW+++WA LM +LIQ+LSA++G+ATG++LAE  R+ YP    +  W  AE+  +  D  E IG+AI
Sbjct:   23 GPAFIAAIGYIDPGNFATNIQAGASFGYQLLWVVVWANLMAMLIQILSAKLGIATGKNLAEQIRDHYPRPVVWFYWVQAEIIAMATDLAEFIGAAI 118
[Close]
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: MNTH_SALPA (Manganese transport protein mntH OS=Salmonella paratyphi A GN=mntH PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.366e-22
Identity = 45/96 (46.88%), Postives = 67/96 (69.79%), Query Frame = 2 
Query:  326 GPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAI 613
            GP F+ +I ++DPGN   ++Q+GA  GY LLW+++WA LM +LIQ+LSA++G+ATG++LAE  R+ YP    +  W  AE+  +  D  E IG+AI
Sbjct:   23 GPAFIAAIGYIDPGNFATNIQAGASFGYQLLWVVVWANLMAMLIQILSAKLGIATGKNLAEQIRDHYPRPVVWFYWVQAEIIAMATDLAEFIGAAI 118
[Close]
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: MNTH_SALG2 (Manganese transport protein mntH OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=mntH PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.366e-22
Identity = 45/96 (46.88%), Postives = 67/96 (69.79%), Query Frame = 2 
Query:  326 GPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAI 613
            GP F+ +I ++DPGN   ++Q+GA  GY LLW+++WA LM +LIQ+LSA++G+ATG++LAE  R+ YP    +  W  AE+  +  D  E IG+AI
Sbjct:   23 GPAFIAAIGYIDPGNFATNIQAGASFGYQLLWVVVWANLMAMLIQILSAKLGIATGKNLAEQIRDHYPRPVVWFYWVQAEIIAMATDLAEFIGAAI 118
[Close]
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: MNTH_SALEP (Manganese transport protein mntH OS=Salmonella enteritidis PT4 (strain P125109) GN=mntH PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.366e-22
Identity = 45/96 (46.88%), Postives = 67/96 (69.79%), Query Frame = 2 
Query:  326 GPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAI 613
            GP F+ +I ++DPGN   ++Q+GA  GY LLW+++WA LM +LIQ+LSA++G+ATG++LAE  R+ YP    +  W  AE+  +  D  E IG+AI
Sbjct:   23 GPAFIAAIGYIDPGNFATNIQAGASFGYQLLWVVVWANLMAMLIQILSAKLGIATGKNLAEQIRDHYPRPVVWFYWVQAEIIAMATDLAEFIGAAI 118
[Close]
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: MNTH_SALCH (Manganese transport protein mntH OS=Salmonella choleraesuis GN=mntH PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.366e-22
Identity = 45/96 (46.88%), Postives = 67/96 (69.79%), Query Frame = 2 
Query:  326 GPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAI 613
            GP F+ +I ++DPGN   ++Q+GA  GY LLW+++WA LM +LIQ+LSA++G+ATG++LAE  R+ YP    +  W  AE+  +  D  E IG+AI
Sbjct:   23 GPAFIAAIGYIDPGNFATNIQAGASFGYQLLWVVVWANLMAMLIQILSAKLGIATGKNLAEQIRDHYPRPVVWFYWVQAEIIAMATDLAEFIGAAI 118
[Close]
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: MNTH_ESCF3 (Manganese transport protein mntH OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=mntH PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.366e-22
Identity = 45/96 (46.88%), Postives = 67/96 (69.79%), Query Frame = 2 
Query:  326 GPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAI 613
            GP F+ +I ++DPGN   ++Q+GA  GY LLW+++WA LM +LIQ+LSA++G+ATG++LAE  R+ YP    +  W  AE+  +  D  E IG+AI
Sbjct:   23 GPAFIAAIGYIDPGNFATNIQAGASFGYQLLWVVVWANLMAMLIQILSAKLGIATGKNLAEQIRDHYPRPVVWFYWVQAEIIAMATDLAEFIGAAI 118
[Close]
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: MNTH_ECOUT (Manganese transport protein mntH OS=Escherichia coli (strain UTI89 / UPEC) GN=mntH PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.366e-22
Identity = 45/96 (46.88%), Postives = 67/96 (69.79%), Query Frame = 2 
Query:  326 GPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAI 613
            GP F+ +I ++DPGN   ++Q+GA  GY LLW+++WA LM +LIQ+LSA++G+ATG++LAE  R+ YP    +  W  AE+  +  D  E IG+AI
Sbjct:   23 GPAFIAAIGYIDPGNFATNIQAGASFGYQLLWVVVWANLMAMLIQILSAKLGIATGKNLAEQIRDHYPRPVVWFYWVQAEIIAMATDLAEFIGAAI 118
[Close]
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: MNTH_ECOSM (Manganese transport protein mntH OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=mntH PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.366e-22
Identity = 45/96 (46.88%), Postives = 67/96 (69.79%), Query Frame = 2 
Query:  326 GPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAI 613
            GP F+ +I ++DPGN   ++Q+GA  GY LLW+++WA LM +LIQ+LSA++G+ATG++LAE  R+ YP    +  W  AE+  +  D  E IG+AI
Sbjct:   23 GPAFIAAIGYIDPGNFATNIQAGASFGYQLLWVVVWANLMAMLIQILSAKLGIATGKNLAEQIRDHYPRPVVWFYWVQAEIIAMATDLAEFIGAAI 118
[Close]
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: MNTH_ECOSE (Manganese transport protein mntH OS=Escherichia coli (strain SE11) GN=mntH PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.366e-22
Identity = 45/96 (46.88%), Postives = 67/96 (69.79%), Query Frame = 2 
Query:  326 GPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAI 613
            GP F+ +I ++DPGN   ++Q+GA  GY LLW+++WA LM +LIQ+LSA++G+ATG++LAE  R+ YP    +  W  AE+  +  D  E IG+AI
Sbjct:   23 GPAFIAAIGYIDPGNFATNIQAGASFGYQLLWVVVWANLMAMLIQILSAKLGIATGKNLAEQIRDHYPRPVVWFYWVQAEIIAMATDLAEFIGAAI 118
[Close]
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: MNTH_ECOLU (Manganese transport protein mntH OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=mntH PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.366e-22
Identity = 45/96 (46.88%), Postives = 67/96 (69.79%), Query Frame = 2 
Query:  326 GPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAI 613
            GP F+ +I ++DPGN   ++Q+GA  GY LLW+++WA LM +LIQ+LSA++G+ATG++LAE  R+ YP    +  W  AE+  +  D  E IG+AI
Sbjct:   23 GPAFIAAIGYIDPGNFATNIQAGASFGYQLLWVVVWANLMAMLIQILSAKLGIATGKNLAEQIRDHYPRPVVWFYWVQAEIIAMATDLAEFIGAAI 118
The following BLAST results are available for this feature:
BLAST of CV884662 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
MNTH_SALPC8.366e-2246.88Manganese transport protein mntH OS=Salmonella par... [more]
MNTH_SALPA8.366e-2246.88Manganese transport protein mntH OS=Salmonella par... [more]
MNTH_SALG28.366e-2246.88Manganese transport protein mntH OS=Salmonella gal... [more]
MNTH_SALEP8.366e-2246.88Manganese transport protein mntH OS=Salmonella ent... [more]
MNTH_SALCH8.366e-2246.88Manganese transport protein mntH OS=Salmonella cho... [more]
MNTH_ESCF38.366e-2246.88Manganese transport protein mntH OS=Escherichia fe... [more]
MNTH_ECOUT8.366e-2246.88Manganese transport protein mntH OS=Escherichia co... [more]
MNTH_ECOSM8.366e-2246.88Manganese transport protein mntH OS=Escherichia co... [more]
MNTH_ECOSE8.366e-2246.88Manganese transport protein mntH OS=Escherichia co... [more]
MNTH_ECOLU8.366e-2246.88Manganese transport protein mntH OS=Escherichia co... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008G10_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T3_G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884662 ID=CV884662; Name=CV884662; organism=Citrus sinensis; type=EST; length=619bp
GACCGTTTTCACCAGTCCTCAGAGGTGAGATCTGTGGAACAGAATCTACT
GCCGAGTTTGGAATATTCCGTGCGTAGATAAAACAAAGAAAGTGAAAATG
GACTCCTCCGAAACCCGAGAAGAAGAAAGCGGGTCCAAAGACAGCAATGA
AACCAACCGCCTCCTTCCAATACCGTCACCACCGTCCTCAACGGAGGACG
ACGAGGAAGTCGCGTTCGATTCACGAGAGAAAATCTTGATCGTCGACGCA
GATTCAGCCTCCACGTTGAACGTTGACGGTGACCAAGTGCCGCCTTTTTC
GTGGAAAAAGCTTTGGTTATTCACTGGACCCGGTTTCTTAATGAGCATAG
CGTTTCTGGATCCGGGGAATCTGGAGGGGGATCTCCAATCGGGGGCGATA
GCAGGGTACTCGCTTCTTTGGTTGCTAATGTGGGCCACCCTCATGGGCTT
GCTTATTCAGCTGCTGTCGGCACGAGTAGGGGTGGCCACGGGGCGTCACT
TGGCAGAGCTGTGTAGAGAGGAGTACCCCAATTGGGCGCGATTCGTGTTG
TGGTTCATGGCTGAAGTGGCCTTGATTGGTGCCGATTTTCAGGAAGTAAT
TGGGAGTGCCATTGCTATC
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