CV884662

Overview
NameCV884662
Unique NameCV884662
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length619
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: MNTH_KLEP3 (Probable manganese transport protein mntH OS=Klebsiella pneumoniae (strain 342) GN=mntH PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.427e-21
Identity = 45/96 (46.88%), Postives = 67/96 (69.79%), Query Frame = 2
Query:  326 GPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAI 613
            GP F+ +I ++DPGN   ++Q+GA  GY LLW+++WA LM +LIQ+LSA++G+ATG++LAE  R+ YP    +  W  AE+  +  D  E IG+AI
Sbjct:   23 GPAFVAAIGYIDPGNFATNIQAGASFGYQLLWVVVWANLMAMLIQVLSAKLGIATGKNLAEQIRDHYPRPVVWFYWVQAEIIAMATDLAEFIGAAI 118          
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: MNTH_ECO27 (Manganese transport protein mntH OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=mntH PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.427e-21
Identity = 45/96 (46.88%), Postives = 67/96 (69.79%), Query Frame = 2
Query:  326 GPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAI 613
            GP F+ +I ++DPGN   ++Q+GA  GY LLW+++WA LM +LIQ+LSA++G+ATG++LAE  R+ YP    +  W  AE+  +  D  E IG+AI
Sbjct:   23 GPAFIAAIGYIDPGNFATNIQAGASFGYQLLWVVVWANLMAMLIQILSAKLGIATGKNLAEQIRDHYPRPFVWFYWVQAEIIAMATDLAEFIGAAI 118          
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: MNTH_GRABC (Probable manganese transport protein mntH OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=mntH PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.864e-21
Identity = 46/106 (43.40%), Postives = 70/106 (66.04%), Query Frame = 2
Query:  302 WKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAIAI 619
            WK   LF GP  + SIA++DPGN   ++Q+G+  GY+LLW++  A L+ +L Q LSA++G+ATGR+L ELCR+ +       LW ++E+A +  D  E +G AI +
Sbjct:   35 WKTGLLFAGPAVIASIAYVDPGNFATNIQAGSRYGYTLLWVVAAANLIAMLFQALSAKLGIATGRNLPELCRDHFSRPLVIALWIISEIAAMATDLAEFLGGAIGL 140          
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: MNTH_PEDPA (Probable manganese transport protein mntH OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=mntH PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.152e-21
Identity = 52/133 (39.10%), Postives = 86/133 (64.66%), Query Frame = 2
Query:  227 EKILIVDADSASTLNVDGDQVPPFS--WKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAIAI 619
            EK+  VD+ S   +N    +VP  +  WK L  ++GPGFL+++ ++DPGN    +  GA   Y+LL +++ ++L+ +L+Q +SAR+G+ TG+ LA+L RE       F+LW +AE+A++  D  E+IGS IA+
Sbjct:    3 EKLDEVDSKSLDEIN-GSIKVPKNAGFWKTLMAYSGPGFLIAVGYMDPGNWITSIAGGAQFRYTLLSVILLSSLIAMLLQAMSARLGIVTGKDLAQLTRERTSKRVGFLLWIVAELAIMATDIAEIIGSGIAL 134          
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: MNTH_ERWT9 (Probable manganese transport protein mntH OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=mntH PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.423e-21
Identity = 43/96 (44.79%), Postives = 68/96 (70.83%), Query Frame = 2
Query:  326 GPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAI 613
            GP F+ +I ++DPGN   ++Q+GA  GY LLW+++WA +M ++IQL+SA++G+ATG++LAE  R+ +P  A +  W  AE+  +  D  E IG+AI
Sbjct:   23 GPAFIAAIGYIDPGNFATNIQAGASYGYQLLWVVVWANVMAMVIQLMSAKLGIATGKNLAEHIRDRFPRPAVWFYWVQAEIIAMATDLAEFIGAAI 118          
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: MNTH_CITK8 (Probable manganese transport protein mntH OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=mntH PE=3 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 5.423e-21
Identity = 44/96 (45.83%), Postives = 66/96 (68.75%), Query Frame = 2
Query:  326 GPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAI 613
            GP F+ +I ++DPGN   ++Q+GA  GY LLW+++WA LM +LIQ+LSA++G+AT ++LAE  R+ YP    +  W  AE+  +  D  E IG+AI
Sbjct:   23 GPAFIAAIGYIDPGNFATNIQAGASFGYKLLWVVVWANLMAMLIQVLSAKLGIATSKNLAEQIRDHYPRPVVWFYWVQAEIIAMATDLAEFIGAAI 118          
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: MNTH_BACSU (Manganese transport protein mntH OS=Bacillus subtilis GN=mntH PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.423e-21
Identity = 43/100 (43.00%), Postives = 69/100 (69.00%), Query Frame = 2
Query:  320 FTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAIAI 619
            F GP F+ +IA++DPGN   ++ +G+  GY LLW+++++ +M LLIQ LSA++G+ATG++L E+ REE+P      LW   E+ +I  D  E IG+A+ +
Sbjct:   33 FLGPAFIAAIAYIDPGNFATNISAGSKYGYMLLWVILFSNIMALLIQSLSAKLGIATGKNLPEVAREEFPKPVSIGLWIQGELVIIATDLAEFIGAALGL 132          
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: MNTH_VEREI (Probable manganese transport protein mntH OS=Verminephrobacter eiseniae (strain EF01-2) GN=mntH PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.208e-20
Identity = 42/100 (42.00%), Postives = 69/100 (69.00%), Query Frame = 2
Query:  320 FTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAIAI 619
            F GP  ++S+A++DPGNL  ++Q+GA  GY+LLW+++ A ++ +L Q LSA++G+ TGR+LAELCRE +       +W ++E+A +  D    +G AI +
Sbjct:   39 FAGPAVVVSVAYMDPGNLATNIQAGARYGYALLWVVLLANVVAMLFQSLSAKLGIVTGRNLAELCRERFSRPVALAMWVVSEIAAMATDLAAFLGGAIGL 138          
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: MNTH_DEIRA (Probable manganese transport protein mntH OS=Deinococcus radiodurans GN=mntH PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.061e-20
Identity = 55/149 (36.91%), Postives = 83/149 (55.70%), Query Frame = 2
Query:  173 PSPPSSTEDDEEVAFDSREKILIVDADSASTLNVDGDQVPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAIAI 619
            PS P    D  E   D+R         + +TL        P   +++  F GP  + SIA++DPGN   +++ GA  GYSLLW+++ A LM ++IQ LSA +G+A+GR+L EL RE +P    +  W  AE+  +  D  E +G+A+AI
Sbjct:    6 PSLPDDRPDPPEQHLDAR---------AGATLR---GTAGPRGVRRILPFLGPAVIASIAYMDPGNFATNIEGGARYGYSLLWVILAANLMAMVIQNLSANLGIASGRNLPELIRERWPRPLVWFYWIQAELVAMATDLAEFLGAALAI 142          
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: MNTH_BURCM (Probable manganese transport protein mntH OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=mntH PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.691e-20
Identity = 52/152 (34.21%), Postives = 88/152 (57.89%), Query Frame = 2
Query:  161 LLPIPSPPSSTEDDEEVAFDSREKILIVDADSASTLNVDGDQVPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAIA 616
            ++P+ S  SS     +++ D   +   V A+ A+   ++G +        L  F GP  + SI ++DPGN   ++Q+GA  GY LLW+++ A  + +L Q +SA++G+ TGR+LAELCRE +P    + +W  +E+A +  D  E +G A+A
Sbjct:    1 MIPVTSKSSSGFALPDLSTDRAHRA--VPAEGAARAALEGRRT---GIAALLPFVGPAVIASIGYMDPGNFATNIQAGAAYGYRLLWVVLAANAIAMLFQAMSAKLGIVTGRNLAELCREHFPAPIVWGMWIASEIAAMATDLAEFLGGALA 147          
The following BLAST results are available for this feature:
BLAST of CV884662 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
MNTH_KLEP31.427e-2146.88Probable manganese transport protein mntH OS=Klebs... [more]
MNTH_ECO271.427e-2146.88Manganese transport protein mntH OS=Escherichia co... [more]
MNTH_GRABC1.864e-2143.40Probable manganese transport protein mntH OS=Granu... [more]
MNTH_PEDPA4.152e-2139.10Probable manganese transport protein mntH OS=Pedio... [more]
MNTH_ERWT95.423e-2144.79Probable manganese transport protein mntH OS=Erwin... [more]
MNTH_CITK85.423e-2145.83Probable manganese transport protein mntH OS=Citro... [more]
MNTH_BACSU5.423e-2143.00Manganese transport protein mntH OS=Bacillus subti... [more]
MNTH_VEREI1.208e-2042.00Probable manganese transport protein mntH OS=Vermi... [more]
MNTH_DEIRA2.061e-2036.91Probable manganese transport protein mntH OS=Deino... [more]
MNTH_BURCM2.691e-2034.21Probable manganese transport protein mntH OS=Burkh... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008G10_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T3_G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884662 ID=CV884662; Name=CV884662; organism=Citrus sinensis; type=EST; length=619bp
GACCGTTTTCACCAGTCCTCAGAGGTGAGATCTGTGGAACAGAATCTACT
GCCGAGTTTGGAATATTCCGTGCGTAGATAAAACAAAGAAAGTGAAAATG
GACTCCTCCGAAACCCGAGAAGAAGAAAGCGGGTCCAAAGACAGCAATGA
AACCAACCGCCTCCTTCCAATACCGTCACCACCGTCCTCAACGGAGGACG
ACGAGGAAGTCGCGTTCGATTCACGAGAGAAAATCTTGATCGTCGACGCA
GATTCAGCCTCCACGTTGAACGTTGACGGTGACCAAGTGCCGCCTTTTTC
GTGGAAAAAGCTTTGGTTATTCACTGGACCCGGTTTCTTAATGAGCATAG
CGTTTCTGGATCCGGGGAATCTGGAGGGGGATCTCCAATCGGGGGCGATA
GCAGGGTACTCGCTTCTTTGGTTGCTAATGTGGGCCACCCTCATGGGCTT
GCTTATTCAGCTGCTGTCGGCACGAGTAGGGGTGGCCACGGGGCGTCACT
TGGCAGAGCTGTGTAGAGAGGAGTACCCCAATTGGGCGCGATTCGTGTTG
TGGTTCATGGCTGAAGTGGCCTTGATTGGTGCCGATTTTCAGGAAGTAAT
TGGGAGTGCCATTGCTATC
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