CV884652

Overview
NameCV884652
Unique NameCV884652
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length777
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV884652_ssr17 microsatellite CV884652_ssr17:17..31. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5486 contig Csv1_Contig5486:28..804. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CV884652 vs. ExPASy Swiss-Prot
Match: RL19_SULSO (50S ribosomal protein L19e OS=Sulfolobus solfataricus GN=rpl19e PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.892e-11
Identity = 41/134 (30.60%), Postives = 64/134 (47.76%), Query Frame = 1 
Query:   34 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDG-FIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFK 432
            M +LK QKRL+AS+   G  ++ +  + + ++  + +R  IR L+KDG  I+ K   I       R K+   K      G RKG + AR  +K                 R+ K ID+H Y ++Y+K KG  +K
Sbjct:    1 MTNLKAQKRLAASIAGVGINRIKVVEDYIEDVQSSLTRDEIRNLIKDGKIIVLKKVGISGGRLKERRKKRSLKSEGKKSGSRKGKKGARANSKQMWVKRVRKIRAYLKWLRDHKVIDRHTYRELYLKTKGGNYK 134
The following BLAST results are available for this feature:
BLAST of CV884652 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RL19_SULSO5.892e-1130.6050S ribosomal protein L19e OS=Sulfolobus solfatari... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008G05_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T3_G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884652 ID=CV884652; Name=CV884652; organism=Citrus sinensis; type=EST; length=777bp
GACGTGAGAGAGGGGGAGAGAAGAGAAGAGAAAATGGTGTCGTTGAAGTT
ACAGAAGCGGCTCTCCGCTAGCGTCCTCAAGTGCGGACGTGGCAAGGTCT
GGCTTGACCCTAATGAGGTCAACGAAATCTCCATGGCCAACTCCAGGCAG
AACATTAGGAAATTGGTGAAGGATGGTTTCATCATCAGGAAGCCAACAAA
GATCCACTCCCGTTCTCGTGCTCGCAGAATGAAGGAAGCCAAGAGGAAGG
GCCGTCACTCTGGATATGGTAAGAGAAAGGGTACTAGGGAGGCGAGGCTT
CCCACCAAAATCCTCTGGATGAGAAGGATGCGTGTGCTCAGGCGGTTGCT
CCGCAAATACCGTGAGTCGAAGAAAATTGACAAGCACATGTACCATGACA
TGTACATGAAGGTCAAGGGTAATGTATTTAAGAACAAGCGTGTCCTCATG
GAGAGTATCCACAAGTCAAAGGCTGAGAAGGCAAGAGAGAAGACTCTTTC
TGACCAGTTTGAGGCTAAGCGCGCCAAGAACAAGGCCAGCAGGGAGAGAA
AGCTGGCCAGGAGAGAAGAGCGACTAGCACAGGGACCTGGAGAGAAGGCA
GTACCAGCACCCCAACCGGCTGAGGGAGCTAGGAAAGCTAAGAAGTGATT
GCTGATACATCGATGATGGAGACTGAAGATTGACAACTTATATATGTTAA
TGTTGGTTCTGGTTTCTTTGTAGGAGTTTGTTTCCCAAGTTATTTTGTTT
TCTGTTTAATGGCAAATTATTTACTTA
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