CV884650

Overview
NameCV884650
Unique NameCV884650
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length897
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884650 vs. ExPASy Swiss-Prot
Match: VAM7B_DICDI (Vesicle-associated membrane protein 7B OS=Dictyostelium discoideum GN=vamp7B PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 8.472e-31
Identity = 72/214 (33.64%), Postives = 120/214 (56.07%), Query Frame = -1
Query:  211 LIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENI-EKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRRKMWIQNMXXXXXXXXXXXXXXXXXXLSVCHGFK 849
            +IYS VARG+ +LAE+T   GNF +I  + L  +P  + K +Y  + + F+YLV +  TY  +A E  GR+IP  FL+ VK  F   Y G K  TA+A  +N +F   L+  M +   +   +  +++  A++ EVK +++ +I  ++L RGEKIE+LV++T+ L  Q+  F++Q  +++  MW +N+                  +S C GF+
Sbjct:    3 IIYSLVARGSSVLAEFTSTNGNFVTITRRILDLIPPNDTKMSYVYEKYIFHYLVSDTLTYLCMADEEFGRRIPFTFLDDVKNRFKSMY-GDKGKTAIAYGMNSDFSRTLENLMDH-YSNTTRVDTMSRTMAEIDEVKNILVSDIAPQLLKRGEKIEMLVERTDTLNQQSFKFKKQSKQLKCAMWWKNVKLMLVLGAIVLIIIFIIVMSYCDGFR 214          
BLAST of CV884650 vs. ExPASy Swiss-Prot
Match: VA712_ARATH (Vesicle-associated membrane protein 712 OS=Arabidopsis thaliana GN=VAMP712 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 4.205e-30
Identity = 72/213 (33.80%), Postives = 121/213 (56.81%), Query Frame = -1
Query:  217 SLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKF-TYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRRKMWIQNMXXXXXXXXXXXXXXXXXXLSVCHG 852
            S++Y+ VARGTV+LAE +  + N ++IA Q L+K+P   +   +Y+ D + F+    +G T   +A E AGR+IP +FLE + + F + YG     +A A ++N EF   L + ++Y  + P     ++++K ++++V+ VM+ENI+ +LDRGE++ELLVDKT N++     FR+Q  +    +W +N                      CHG
Sbjct:    2 SILYALVARGTVVLAELSTTSTNASTIAKQILEKIPGNGDSHVSYSQDRYVFHVKRTDGLTVLCMADEDAGRRIPFSFLEDIHQRFVRTYGRA-IHSAQAYAMNDEFSRVLNQQIEYYSNDPNA-DTISRIKGEMNQVRDVMIENIDNILDRGERLELLVDKTANMQGNTFRFRKQTRRFNNTVWWRNCKLTLLLILVLLVIIYIGVAFACHG 212          
BLAST of CV884650 vs. ExPASy Swiss-Prot
Match: VAMP7_RAT (Vesicle-associated membrane protein 7 OS=Rattus norvegicus GN=Vamp7 PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.087e-29
Identity = 65/188 (34.57%), Postives = 112/188 (59.57%), Query Frame = -1
Query:  289 SLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRRKMWIQNM 852
            +++++ VARGT ILA++    GNF  +  Q L K+P+ NNK TY+   + F+Y+ ++   Y  +  +   R     FL  VK+ F   Y G +A TA+  ++N EF S L   +++  ++ + + ++ + +AQV E+KG+M+ NI+ V  RGE++ELL+DKTENL   +  F+     + R M ++N+
Sbjct:    2 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFGFLNEVKKRFQTTY-GSRAQTALPYAMNSEFSSVLAAQLKHHSEN-QSLDRVTETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCVKNV 187          
BLAST of CV884650 vs. ExPASy Swiss-Prot
Match: VAMP7_MOUSE (Vesicle-associated membrane protein 7 OS=Mus musculus GN=Vamp7 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.087e-29
Identity = 66/188 (35.11%), Postives = 113/188 (60.11%), Query Frame = -1
Query:  289 SLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRRKMWIQNM 852
            +++++ VARGT ILA++    GNF  +  Q L K+P+ NNK TY+   + F+Y+ ++   Y  +  +   R    +FL  VK+ F   Y G +A TA+  ++N EF S L   +++  ++ + + K+ + +AQV E+KG+M+ NI+ V  RGE++ELL+DKTENL   +  F+     + R M ++N+
Sbjct:    2 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVKKRFQTTY-GSRAQTALPYAMNSEFSSVLAAQLKHHSEN-KSLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNI 187          
BLAST of CV884650 vs. ExPASy Swiss-Prot
Match: VAMP7_CHICK (Vesicle-associated membrane protein 7 OS=Gallus gallus GN=VAMP7 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.087e-29
Identity = 69/190 (36.32%), Postives = 111/190 (58.42%), Query Frame = -1
Query:  289 SLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQYCVDHPEE--ISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRRKMWIQNM 852
            +++++ VARGT ILA++    GNF  +  Q L K+P+ NNK TY+   + F+Y+ ++   Y  +  +   R     FL  +K+ F   Y G +A TA+  ++N EF S L   ++Y   H E     ++A+ +AQV E+KG+M+ NI+ V  RGEK+ELL+DKTENL   +  F+     + R M ++N+
Sbjct:    2 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIIYLCITDDDFERSRAFNFLNEIKKRFQTTY-GSRAQTALPYAMNSEFSSVLAAQLKY---HSESKGTDQVAETQAQVDELKGIMVRNIDLVAQRGEKLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNL 187          
BLAST of CV884650 vs. ExPASy Swiss-Prot
Match: VAMP7_HUMAN (Vesicle-associated membrane protein 7 OS=Homo sapiens GN=VAMP7 PE=1 SV=3)

HSP 1 Score: 127.872 bits (320), Expect = 7.930e-29
Identity = 65/188 (34.57%), Postives = 112/188 (59.57%), Query Frame = -1
Query:  289 SLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRRKMWIQNM 852
            +++++ VARGT ILA++    GNF  +  Q L K+P+ NNK TY+   + F+Y+ ++   Y  +  +   R     FL  +K+ F   Y G +A TA+  ++N EF S L   +++  ++ + + K+ + +AQV E+KG+M+ NI+ V  RGE++ELL+DKTENL   +  F+     + R M ++N+
Sbjct:    2 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFNFLNEIKKRFQTTY-GSRAQTALPYAMNSEFSSVLAAQLKHHSEN-KGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNL 187          
BLAST of CV884650 vs. ExPASy Swiss-Prot
Match: VAMP7_BOVIN (Vesicle-associated membrane protein 7 OS=Bos taurus GN=VAMP7 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 7.930e-29
Identity = 65/188 (34.57%), Postives = 112/188 (59.57%), Query Frame = -1
Query:  289 SLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRRKMWIQNM 852
            +++++ VARGT ILA++    GNF  +  Q L K+P+ NNK TY+   + F+Y+ ++   Y  +  +   R     FL  +K+ F   Y G +A TA+  ++N EF S L   +++  ++ + + K+ + +AQV E+KG+M+ NI+ V  RGE++ELL+DKTENL   +  F+     + R M ++N+
Sbjct:    2 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFNFLNEIKKRFQTTY-GSRAQTALPYAMNSEFSSVLAAQLKHHSEN-KGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNL 187          
BLAST of CV884650 vs. ExPASy Swiss-Prot
Match: VAMP7_PONAB (Vesicle-associated membrane protein 7 OS=Pongo abelii GN=VAMP7 PE=2 SV=3)

HSP 1 Score: 126.716 bits (317), Expect = 1.767e-28
Identity = 65/188 (34.57%), Postives = 111/188 (59.04%), Query Frame = -1
Query:  289 SLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRRKMWIQNM 852
            +++++ VARGT ILA++    GNF  +  Q L K+P+ NNK TY    + F+Y+ ++   Y  +  +   R     FL  +K+ F   Y G +A TA+  ++N EF S L   +++  ++ + + K+ + +AQV E+KG+M+ NI+ V  RGE++ELL+DKTENL   +  F+     + R M ++N+
Sbjct:    2 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYPHGNYLFHYICQDRIVYLCITDDDFERSRAFNFLNEIKKRFQTTY-GSRAQTALPYAMNSEFSSVLAAQLKHHSEN-KGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNL 187          
BLAST of CV884650 vs. ExPASy Swiss-Prot
Match: VAM7A_DICDI (Vesicle-associated membrane protein 7A OS=Dictyostelium discoideum GN=vamp7A PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 6.283e-26
Identity = 67/191 (35.08%), Postives = 108/191 (56.54%), Query Frame = -1
Query:  292 MGQQSLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRRKMWIQN 864
            M Q  ++Y+ V+   V L E+    GNF  +A + + K+P T+ K  Y  + H F+Y+ EN   +  +  E  G QIP  FL  +++ F + YG   +  +   + +  F   L+E M+Y   +P+  +K+  V  QVSE KG + + IEK + RGEKIE++VDKTE L+S++  F+     ++RK+W QN
Sbjct:    1 MSQTDILYACVSYKGVCLVEHKIANGNFIDLARRLITKIPPTSKKI-YTSENHNFHYISENDLAFLCLCHEKLGVQIPSEFLSDIRQQFIRSYGQSFSQNSPTATYDP-FIRVLEERMKY-YSNPKS-NKMNLVMDQVSEAKGALTDAIEKTIHRGEKIEIIVDKTERLQSESFVFKSNSVALKRKLWWQN 187          
The following BLAST results are available for this feature:
BLAST of CV884650 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
VAM7B_DICDI8.472e-3133.64Vesicle-associated membrane protein 7B OS=Dictyost... [more]
VA712_ARATH4.205e-3033.80Vesicle-associated membrane protein 712 OS=Arabido... [more]
VAMP7_RAT2.087e-2934.57Vesicle-associated membrane protein 7 OS=Rattus no... [more]
VAMP7_MOUSE2.087e-2935.11Vesicle-associated membrane protein 7 OS=Mus muscu... [more]
VAMP7_CHICK2.087e-2936.32Vesicle-associated membrane protein 7 OS=Gallus ga... [more]
VAMP7_HUMAN7.930e-2934.57Vesicle-associated membrane protein 7 OS=Homo sapi... [more]
VAMP7_BOVIN7.930e-2934.57Vesicle-associated membrane protein 7 OS=Bos tauru... [more]
VAMP7_PONAB1.767e-2834.57Vesicle-associated membrane protein 7 OS=Pongo abe... [more]
VAM7A_DICDI6.283e-2635.08Vesicle-associated membrane protein 7A OS=Dictyost... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008G03_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T7_G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884650 ID=CV884650; Name=CV884650; organism=Citrus sinensis; type=EST; length=897bp
CCTATACAAGCAATCGAAAAGATACAAATTCATTCCCTTGCCAAGGGGCA
AGTAAGGGCATGATGACCTAAAAGAGGGGAAAAAGAAAACATAAACAAAA
ACAAGCGTGAGAGATGCAAGGATCAAAAGATGTGGCCAATGTACCAAGTC
GACCATGTCAGCGGGACAGCAAAGCACAGTTTCCAGGGACTTTCCAAGAC
CAAATCAACATTTGAAGCCATGGCAAACTGACAGAACGATGATAAGGATC
AATGCGATGATGATACCCAAAACGATCAATTTAATCTTCATATTCTGGAT
CCACATCTTCCTTCTCATCTTCGTCCCCTGTTGTCGGAAATCTTGTGCCT
GTGACCGAAGGTTCTCAGTTTTGTCAACCAGCAGCTCAATCTTCTCACCA
CGATCAAGAACCTTCTCAATATTTTCCATCATAACCCCCTTGACTTCAGA
AACCTGAGCTTTGACTTTGGCAAGCTTGCTGATCTCTTCAGGATGATCCA
CACAATACTGCATGTGCTCCTTTAGTTTAGACCCAAACTCTTTGTTCAGG
CTATTTGCAACAGCCGTTGCAGCTTTTCCTCCACCATATCTCTTGTTGAA
ATCCTCCTTAACTCGCTCCAGAAAGGCAATTGGAATTTGCCTGCCAGCAG
ATTCAACAGCAACCACACAATAGGTGAAGCCGTTCTCAACGAGGTAATTG
AAGGTGTGGCCATCGCAGTTGTAGGTGAACTTGTTATTGGTAGCGGGAAG
TTTCTGGAGACATTGCGATGCGATGCTCGTGAAATTACCGGTGAACTCAG
TGTACTCGGCGAGGATCACCGTGCCTCGAGCCACGAAGCTATAGATCAAC
GACTGTTGGCCCATCCTCAAAACCCTAACCCTAGATTCAAATTCGAG
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