CV884649

Overview
NameCV884649
Unique NameCV884649
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length797
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV884649_ssr43 microsatellite CV884649_ssr43:43..64. BLAST: Citrus ESTs to Prunus persica proteins V1
CV884649_ssr33 microsatellite CV884649_ssr33:33..44. BLAST: Citrus ESTs to Prunus persica proteins V1
CV884649_ssr45 microsatellite CV884649_ssr45:45..64. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3357 contig Csv1_Contig3357:1..797. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884649 vs. ExPASy Swiss-Prot
Match: VAM7B_DICDI (Vesicle-associated membrane protein 7B OS=Dictyostelium discoideum GN=vamp7B PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.461e-30
Identity = 68/188 (36.17%), Postives = 114/188 (60.64%), Query Frame = 2
Query:  164 LIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENI-EKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRRKMWIQNM 724
            +IYS VARG+ +LAE+T   GNF +I  + L  +P  + K +Y  + + F+YLV +  TY  +A E  GR+IP  FL+ VK  F   Y G K  TA+A  +N +F   L+  M +   +   +  +++  A++ EVK +++ +I  ++L RGEKIE+LV++T+ L  Q+  F++Q  +++  MW +N+
Sbjct:    3 IIYSLVARGSSVLAEFTSTNGNFVTITRRILDLIPPNDTKMSYVYEKYIFHYLVSDTLTYLCMADEEFGRRIPFTFLDDVKNRFKSMY-GDKGKTAIAYGMNSDFSRTLENLMDH-YSNTTRVDTMSRTMAEIDEVKNILVSDIAPQLLKRGEKIEMLVERTDTLNQQSFKFKKQSKQLKCAMWWKNV 188          
BLAST of CV884649 vs. ExPASy Swiss-Prot
Match: VA712_ARATH (Vesicle-associated membrane protein 712 OS=Arabidopsis thaliana GN=VAMP712 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.461e-30
Identity = 72/213 (33.80%), Postives = 121/213 (56.81%), Query Frame = 2
Query:  161 SLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKF-TYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRRKMWIQNMXXXXXXXXXXXXXXXXXXXSVCHG 796
            S++Y+ VARGTV+LAE +  + N ++IA Q L+K+P   +   +Y+ D + F+    +G T   +A E AGR+IP +FLE + + F + YG     +A A ++N EF   L + ++Y  + P     ++++K ++++V+ VM+ENI+ +LDRGE++ELLVDKT N++     FR+Q  +    +W +N                      CHG
Sbjct:    2 SILYALVARGTVVLAELSTTSTNASTIAKQILEKIPGNGDSHVSYSQDRYVFHVKRTDGLTVLCMADEDAGRRIPFSFLEDIHQRFVRTYGRA-IHSAQAYAMNDEFSRVLNQQIEYYSNDPNA-DTISRIKGEMNQVRDVMIENIDNILDRGERLELLVDKTANMQGNTFRFRKQTRRFNNTVWWRNCKLTLLLILVLLVIIYIGVAFACHG 212          
BLAST of CV884649 vs. ExPASy Swiss-Prot
Match: VAMP7_RAT (Vesicle-associated membrane protein 7 OS=Rattus norvegicus GN=Vamp7 PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.718e-29
Identity = 65/188 (34.57%), Postives = 112/188 (59.57%), Query Frame = 2
Query:  161 SLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRRKMWIQNM 724
            +++++ VARGT ILA++    GNF  +  Q L K+P+ NNK TY+   + F+Y+ ++   Y  +  +   R     FL  VK+ F   Y G +A TA+  ++N EF S L   +++  ++ + + ++ + +AQV E+KG+M+ NI+ V  RGE++ELL+DKTENL   +  F+     + R M ++N+
Sbjct:    2 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFGFLNEVKKRFQTTY-GSRAQTALPYAMNSEFSSVLAAQLKHHSEN-QSLDRVTETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCVKNV 187          
BLAST of CV884649 vs. ExPASy Swiss-Prot
Match: VAMP7_MOUSE (Vesicle-associated membrane protein 7 OS=Mus musculus GN=Vamp7 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.718e-29
Identity = 66/188 (35.11%), Postives = 113/188 (60.11%), Query Frame = 2
Query:  161 SLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRRKMWIQNM 724
            +++++ VARGT ILA++    GNF  +  Q L K+P+ NNK TY+   + F+Y+ ++   Y  +  +   R    +FL  VK+ F   Y G +A TA+  ++N EF S L   +++  ++ + + K+ + +AQV E+KG+M+ NI+ V  RGE++ELL+DKTENL   +  F+     + R M ++N+
Sbjct:    2 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVKKRFQTTY-GSRAQTALPYAMNSEFSSVLAAQLKHHSEN-KSLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNI 187          
BLAST of CV884649 vs. ExPASy Swiss-Prot
Match: VAMP7_CHICK (Vesicle-associated membrane protein 7 OS=Gallus gallus GN=VAMP7 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.718e-29
Identity = 69/190 (36.32%), Postives = 111/190 (58.42%), Query Frame = 2
Query:  161 SLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQYCVDHPEE--ISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRRKMWIQNM 724
            +++++ VARGT ILA++    GNF  +  Q L K+P+ NNK TY+   + F+Y+ ++   Y  +  +   R     FL  +K+ F   Y G +A TA+  ++N EF S L   ++Y   H E     ++A+ +AQV E+KG+M+ NI+ V  RGEK+ELL+DKTENL   +  F+     + R M ++N+
Sbjct:    2 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIIYLCITDDDFERSRAFNFLNEIKKRFQTTY-GSRAQTALPYAMNSEFSSVLAAQLKY---HSESKGTDQVAETQAQVDELKGIMVRNIDLVAQRGEKLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNL 187          
BLAST of CV884649 vs. ExPASy Swiss-Prot
Match: VAMP7_HUMAN (Vesicle-associated membrane protein 7 OS=Homo sapiens GN=VAMP7 PE=1 SV=3)

HSP 1 Score: 127.872 bits (320), Expect = 6.527e-29
Identity = 65/188 (34.57%), Postives = 112/188 (59.57%), Query Frame = 2
Query:  161 SLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRRKMWIQNM 724
            +++++ VARGT ILA++    GNF  +  Q L K+P+ NNK TY+   + F+Y+ ++   Y  +  +   R     FL  +K+ F   Y G +A TA+  ++N EF S L   +++  ++ + + K+ + +AQV E+KG+M+ NI+ V  RGE++ELL+DKTENL   +  F+     + R M ++N+
Sbjct:    2 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFNFLNEIKKRFQTTY-GSRAQTALPYAMNSEFSSVLAAQLKHHSEN-KGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNL 187          
BLAST of CV884649 vs. ExPASy Swiss-Prot
Match: VAMP7_BOVIN (Vesicle-associated membrane protein 7 OS=Bos taurus GN=VAMP7 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.527e-29
Identity = 65/188 (34.57%), Postives = 112/188 (59.57%), Query Frame = 2
Query:  161 SLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRRKMWIQNM 724
            +++++ VARGT ILA++    GNF  +  Q L K+P+ NNK TY+   + F+Y+ ++   Y  +  +   R     FL  +K+ F   Y G +A TA+  ++N EF S L   +++  ++ + + K+ + +AQV E+KG+M+ NI+ V  RGE++ELL+DKTENL   +  F+     + R M ++N+
Sbjct:    2 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFNFLNEIKKRFQTTY-GSRAQTALPYAMNSEFSSVLAAQLKHHSEN-KGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNL 187          
BLAST of CV884649 vs. ExPASy Swiss-Prot
Match: VAMP7_PONAB (Vesicle-associated membrane protein 7 OS=Pongo abelii GN=VAMP7 PE=2 SV=3)

HSP 1 Score: 126.716 bits (317), Expect = 1.454e-28
Identity = 65/188 (34.57%), Postives = 111/188 (59.04%), Query Frame = 2
Query:  161 SLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRRKMWIQNM 724
            +++++ VARGT ILA++    GNF  +  Q L K+P+ NNK TY    + F+Y+ ++   Y  +  +   R     FL  +K+ F   Y G +A TA+  ++N EF S L   +++  ++ + + K+ + +AQV E+KG+M+ NI+ V  RGE++ELL+DKTENL   +  F+     + R M ++N+
Sbjct:    2 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYPHGNYLFHYICQDRIVYLCITDDDFERSRAFNFLNEIKKRFQTTY-GSRAQTALPYAMNSEFSSVLAAQLKHHSEN-KGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNL 187          
BLAST of CV884649 vs. ExPASy Swiss-Prot
Match: VAM7A_DICDI (Vesicle-associated membrane protein 7A OS=Dictyostelium discoideum GN=vamp7A PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.172e-26
Identity = 67/191 (35.08%), Postives = 108/191 (56.54%), Query Frame = 2
Query:  149 MGQQSLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRRKMWIQN 721
            M Q  ++Y+ V+   V L E+    GNF  +A + + K+P T+ K  Y  + H F+Y+ EN   +  +  E  G QIP  FL  +++ F + YG   +  +   + +  F   L+E M+Y   +P+  +K+  V  QVSE KG + + IEK + RGEKIE++VDKTE L+S++  F+     ++RK+W QN
Sbjct:    1 MSQTDILYACVSYKGVCLVEHKIANGNFIDLARRLITKIPPTSKKI-YTSENHNFHYISENDLAFLCLCHEKLGVQIPSEFLSDIRQQFIRSYGQSFSQNSPTATYDP-FIRVLEERMKY-YSNPKS-NKMNLVMDQVSEAKGALTDAIEKTIHRGEKIEIIVDKTERLQSESFVFKSNSVALKRKLWWQN 187          
The following BLAST results are available for this feature:
BLAST of CV884649 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
VAM7B_DICDI3.461e-3036.17Vesicle-associated membrane protein 7B OS=Dictyost... [more]
VA712_ARATH3.461e-3033.80Vesicle-associated membrane protein 712 OS=Arabido... [more]
VAMP7_RAT1.718e-2934.57Vesicle-associated membrane protein 7 OS=Rattus no... [more]
VAMP7_MOUSE1.718e-2935.11Vesicle-associated membrane protein 7 OS=Mus muscu... [more]
VAMP7_CHICK1.718e-2936.32Vesicle-associated membrane protein 7 OS=Gallus ga... [more]
VAMP7_HUMAN6.527e-2934.57Vesicle-associated membrane protein 7 OS=Homo sapi... [more]
VAMP7_BOVIN6.527e-2934.57Vesicle-associated membrane protein 7 OS=Bos tauru... [more]
VAMP7_PONAB1.454e-2834.57Vesicle-associated membrane protein 7 OS=Pongo abe... [more]
VAM7A_DICDI5.172e-2635.08Vesicle-associated membrane protein 7A OS=Dictyost... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_008G03_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T3_G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884649 ID=CV884649; Name=CV884649; organism=Citrus sinensis; type=EST; length=797bp
GTTTCCCTCTCTCCGATCCCACGGTTTTCCTCTCCTTCCTTCCTCTCTCT
CTCTCTCTCTCTCTAATTTTTGTTTTTTCTGCTCCTCATTTTTTTTTGTC
AATTGAATCTTTCATCTCGAATTTGAATCTAGGGTTAGGGTTTTGAGGAT
GGGCCAACAGTCGTTGATCTATAGCTTCGTGGCTCGAGGCACGGTGATCC
TCGCCGAGTACACTGAGTTCACCGGTAATTTCACGAGCATCGCATCGCAA
TGTCTCCAGAAACTTCCCGCTACCAATAACAAGTTCACCTACAACTGCGA
TGGCCACACCTTCAATTACCTCGTTGAGAACGGCTTCACCTATTGTGTGG
TTGCTGTTGAATCTGCTGGCAGGCAAATTCCAATTGCCTTTCTGGAGCGA
GTTAAGGAGGATTTCAACAAGAGATATGGTGGAGGAAAAGCTGCAACGGC
TGTTGCAAATAGCCTGAACAAAGAGTTTGGGTCTAAACTAAAGGAGCACA
TGCAGTATTGTGTGGATCATCCTGAAGAGATCAGCAAGCTTGCCAAAGTC
AAAGCTCAGGTTTCTGAAGTCAAGGGGGTTATGATGGAAAATATTGAGAA
GGTTCTTGATCGTGGTGAGAAGATTGAGCTGCTGGTTGACAAAACTGAGA
ACCTTCGGTCACAGGCACAAGATTTCCGACAACAGGGGACGAAGATGAGA
AGGAAGATGTGGATCCAGAATATGAAGATTAAATTGATCGTTTTGGGTAT
CATCATCGCATTGATCCTTATCATCGTTCTGTCAGTTTGCCATGGCT
back to top