EY665182

Overview
NameEY665182
Unique NameEY665182
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1045
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665182 vs. ExPASy Swiss-Prot
Match: SPB4_AJECN (ATP-dependent rRNA helicase SPB4 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=SPB4 PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 2.889e-12
Identity = 53/147 (36.05%), Postives = 77/147 (52.38%), Query Frame = 1
Query:   67 KVTNEGLQQGYCVVPSAKRFILLYSFLKRNLS---KKVMVFFSSCNSVKFHSELLRYIQVDCFD---IHGKQKQQKRTTTFFDFCKA-EKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKE-*YSSGGVGTAPWKKGAKGNAPLFL 483
            K T   LQ  Y + P   +   +  ++   LS   ++ +++FS+C +V ++  +L  I  D F    +HGK   Q R   F  F  +    ILL TDVAARGLDIPAVD ++Q DPP +PK   +  G  G A    G +G + +FL
Sbjct:  274 KRTPASLQMTYLLTPPTHKLPAV-KYIVSTLSPTPQRSILYFSTCAAVDYYQHILPCILPDRFTTIPLHGKHPPQVRQKNFTRFVNSVTSSILLTTDVAARGLDIPAVDLVIQIDPPTDPKAFLHRCGRAGRA----GRRGLSVIFL 415          
BLAST of EY665182 vs. ExPASy Swiss-Prot
Match: DBP7_SCHPO (ATP-dependent RNA helicase dbp7 OS=Schizosaccharomyces pombe GN=dbp7 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.889e-12
Identity = 52/153 (33.99%), Postives = 76/153 (49.67%), Query Frame = 1
Query:   46 DVDDGRTKVTNEGLQQGYCVVPSAKRFILLYSFLKRNLS--KKVMVFFSSCNSVKFHSELLRY---------------------------IQVD----CFDIHGKQKQQKRTTTFFDFCKAEKG---ILLCTDVAARGLDIPAVDWIVQYDPP 396
            + +DG ++   + LQ+ Y VVP   R + L + L+ ++   KK+++F S  +SV FH E  R                            +++D     + +HG   QQ RT+T   F  +E     ILLCTDVAARGLD+P VD +VQYD P
Sbjct:  373 ETNDGYSQAPEQLLQR-YVVVPPKLRLVSLVALLRSHVRSYKKIIIFLSCSDSVDFHFEAFRCAINADEMEEAVKEKPDSEGDIISNAPALRIDGKSNVYRLHGSLSQQIRTSTLNLFSSSEDSGSHILLCTDVAARGLDLPNVDLVVQYDAP 524          
BLAST of EY665182 vs. ExPASy Swiss-Prot
Match: SPB4_SCHPO (ATP-dependent rRNA helicase spb4 OS=Schizosaccharomyces pombe GN=spb4 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.773e-12
Identity = 50/133 (37.59%), Postives = 76/133 (57.14%), Query Frame = 1
Query:  163 KKVMVFFSSCNSVK-FHSELLRY-IQVDCFDIHGKQKQQKRTTTFFDFCKA-EKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKE-*YSSGGVGTAPWKKGAKGNAPLFLDSRKNLHFPSIF*RAGKNPLVK 549
            +K +VFFSSC SV+ F+S  L Y +  +   +HG+Q Q  R+  F  F K+ +K +L  TD+A+RGLDIP VD+++Q DPP +PK   +  G  G A    G  G A + L+  +   +  +  R  K P+ +
Sbjct:  257 EKAIVFFSSCASVEYFNSLFLTYKLPFEIVALHGQQVQSNRSRNFEKFKKSNKKTVLFTTDIASRGLDIPNVDFVLQLDPPLDPKSFSHRCGRAGRA----GRAGVAIVLLNDGREEEYEELL-RVRKVPITR 384          
BLAST of EY665182 vs. ExPASy Swiss-Prot
Match: SPB4_PICGU (ATP-dependent rRNA helicase SPB4 OS=Pichia guilliermondii GN=SPB4 PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 3.773e-12
Identity = 43/134 (32.09%), Postives = 69/134 (51.49%), Query Frame = 1
Query:   28 TTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQ----VDCFDIHGKQKQQKRTTTFFDFCKAE----KGILLCTDVAARGLDIPAVDWIVQYDPPDEP 405
            + PV I V+  + +   + L   Y +V    +  +L + L     KK +V+F +C SVK+   + + +     V+   IHG+   + R      F + +    K +LL TDVAARG+DIP VD ++Q DPP +P
Sbjct:  223 SNPVKISVNSNKAESKPQSLTVNYMMVNPETKIAVLINMLSTLQYKKCIVYFPTCASVKYFYSVFQKLHPLEDVNLTSIHGQLLAKARLKAMNKFTEGDVRTSKHVLLTTDVAARGIDIPEVDLVIQLDPPTDP 356          
BLAST of EY665182 vs. ExPASy Swiss-Prot
Match: DBP8_GIBZE (ATP-dependent RNA helicase DBP8 OS=Gibberella zeae GN=DBP8 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.927e-12
Identity = 51/155 (32.90%), Postives = 79/155 (50.97%), Query Frame = 1
Query:   34 PVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYSFL--KRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKE*YSSGGVGTAPWKKGAKGNAPLFLDSR 492
            PV++   D +T      L+Q Y  VP   +   L++FL  + N+ K V++F +  ++  +   LLR ++     +H K  Q++R      F  +   IL+ TDVAARGLDIP V  ++ YD P +P + Y      TA  + G KG A  F+  R
Sbjct:  327 PVFVCEVDTQTLAIPATLKQMYIKVPVTHKEHYLHTFLLTEANVDKTVILFCNRTSTADYLHHLLRMLEHRVTSLHSKLPQRQRIDNLARFRASAARILVATDVAARGLDIPEVSLVINYDLPRDPDD-YIHRVGRTA--RAGRKGEAVSFVGQR 478          
BLAST of EY665182 vs. ExPASy Swiss-Prot
Match: DBP7_YARLI (ATP-dependent RNA helicase DBP7 OS=Yarrowia lipolytica GN=DBP7 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.927e-12
Identity = 54/161 (33.54%), Postives = 77/161 (47.83%), Query Frame = 1
Query:   85 LQQGYCVVPSAKRFILLYSFLKRNL-------SKKVMVFFSSCNSVKFHSE--------------------LLRYIQVDCFDIHGKQKQQKRTTTFFDFCK-AEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKE*YSSGGVGTAPWKKGAKGNAPLFL 483
            L Q + VVP+  R + L   L+ ++       + KV+VF S  +SV FH +                    LL  +    + +HG   QQ RT T   F K +   ILLCTDVA+RGLD+P +  +++YDPP   ++     G  TA  + G  G A LFL
Sbjct:  488 LVQEWVVVPAKLRLVTLLGALRGDILQSSEKTNTKVIVFLSCSDSVDFHFDVLSRDGSQINKMDTAKTAPLLLDDVSTSVYKLHGSLSQQARTATLASFAKNSTPSILLCTDVASRGLDLPKITHVIEYDPPFSIEDHLHRVG-RTA--RAGQDGRALLFL 645          
BLAST of EY665182 vs. ExPASy Swiss-Prot
Match: RRP3_USTMA (ATP-dependent rRNA helicase RRP3 OS=Ustilago maydis GN=RRP3 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 8.404e-12
Identity = 44/126 (34.92%), Postives = 63/126 (50.00%), Query Frame = 1
Query:   34 PVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKE 411
            PV ++VD   T V+   L+Q Y  +P A +   L           ++VF  + +  +  S LLR +      +HG+  QQ R      F    + IL+ TDVA+RGLDIPAVD +V YD P   K+
Sbjct:  303 PVRVEVDTKYTTVST--LKQHYMFMPFAHKDTYLVHLANEQAGHSIIVFTRTVHDSQRLSILLRLLGFPAIPLHGQLSQQARLGALNKFKTGGRSILVATDVASRGLDIPAVDLVVNYDIPTNSKD 426          
BLAST of EY665182 vs. ExPASy Swiss-Prot
Match: MAK5_NEUCR (ATP-dependent RNA helicase mak-5 OS=Neurospora crassa GN=mak-5 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 8.404e-12
Identity = 46/139 (33.09%), Postives = 74/139 (53.24%), Query Frame = 1
Query:    7 LARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKG---------ILLCTDVAARGLDIPAVDWIVQYDPP 396
            L +L+F+ TP ++D +       N  L++G  +    ++ + LY+ L    +++ +VF +S NSV+  + LL  + +  F +H    QQ R  +   F KA +G         IL+ TDVAARGLDIP VD ++ Y  P
Sbjct:  471 LQKLNFRETPKFVDANPVHQMAEN--LKEGLIMCGDMEKDLYLYATLMLQPTRRALVFTNSVNSVRRLTPLLENLNLPAFPLHSGMIQQARLRSIDRF-KANEGAKKKNGSAAILVATDVAARGLDIPDVDLVIHYHVP 606          
BLAST of EY665182 vs. ExPASy Swiss-Prot
Match: DDX55_CAEEL (Probable ATP-dependent RNA helicase DDX55 homolog OS=Caenorhabditis elegans GN=ZK512.2 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 8.404e-12
Identity = 43/155 (27.74%), Postives = 77/155 (49.68%), Query Frame = 1
Query:   43 IDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYI--QVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKE*YSSGGVGTA--PWKKGAKGNAPLFLDSRK 495
            + V   R       L+  Y    + ++  +   F+++   KK+++FF SCNSV++  ++      +   F +HGK     R +    F  +  G+++ TDV ARG+DI  +DW++Q+D P      +SS  V  A    + G +GNA + + S +
Sbjct:  218 VKVAQERNSAAPSTLKNYYVECRADEKTSVCLEFIRQRTDKKILIFFPSCNSVRYFYKIFERCLGKRPLFAVHGKCSNPHRASQIKAFSDSTNGVMISTDVMARGIDISDIDWVIQFDLPK-----HSSWFVHRAGRTARCGREGNALILIASEQ 367          
BLAST of EY665182 vs. ExPASy Swiss-Prot
Match: SPB4_EMENI (ATP-dependent rRNA helicase spb4 OS=Emericella nidulans GN=spb4 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.098e-11
Identity = 50/126 (39.68%), Postives = 64/126 (50.79%), Query Frame = 1
Query:   49 VDDGRTKVTNEGLQQGYCVVPSAKRFILLYSFLK--RNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDI---HGKQKQQKRTTTFFDFCKAEK-GILLCTDVAARGLDIPAVDWIVQYDPPDEPK 408
            VDD RT  +   LQ  Y   P   +F  L   L   +    K + F S+C+ V + S +L  I  + F +   HGK     R   F  F  A    ILL TDVA+RGLDIP+VD +VQ DPP +PK
Sbjct:  259 VDDKRTPAS---LQMTYLTQPPTGKFPALKHILNSVQPTPSKSIFFVSTCSGVDYLSVILPLILGNDFQLIPLHGKHPANVRQKNFNRFVNAHNPAILLTTDVASRGLDIPSVDLVVQIDPPSDPK 381          
The following BLAST results are available for this feature:
BLAST of EY665182 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 129
Match NameE-valueIdentityDescription
SPB4_AJECN2.889e-1236.05ATP-dependent rRNA helicase SPB4 OS=Ajellomyces ca... [more]
DBP7_SCHPO2.889e-1233.99ATP-dependent RNA helicase dbp7 OS=Schizosaccharom... [more]
SPB4_SCHPO3.773e-1237.59ATP-dependent rRNA helicase spb4 OS=Schizosaccharo... [more]
SPB4_PICGU3.773e-1232.09ATP-dependent rRNA helicase SPB4 OS=Pichia guillie... [more]
DBP8_GIBZE4.927e-1232.90ATP-dependent RNA helicase DBP8 OS=Gibberella zeae... [more]
DBP7_YARLI4.927e-1233.54ATP-dependent RNA helicase DBP7 OS=Yarrowia lipoly... [more]
RRP3_USTMA8.404e-1234.92ATP-dependent rRNA helicase RRP3 OS=Ustilago maydi... [more]
MAK5_NEUCR8.404e-1233.09ATP-dependent RNA helicase mak-5 OS=Neurospora cra... [more]
DDX55_CAEEL8.404e-1227.74Probable ATP-dependent RNA helicase DDX55 homolog ... [more]
SPB4_EMENI1.098e-1139.68ATP-dependent rRNA helicase spb4 OS=Emericella nid... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-083-A02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665182 ID=EY665182; Name=EY665182; organism=Citrus sinensis; type=EST; length=1045bp
GAGGATCTTGCTCGCTTGTCATTTCAGACAACTCCAGTTTATATTGATGT
GGATGATGGGAGAACTAAGGTCACCAACGAAGGCCTGCAGCAAGGCTATT
GTGTGGTGCCCAGTGCCAAGAGATTTATCCTTCTATATTCCTTCTTGAAG
AGGAATCTGTCAAAGAAAGTGATGGTCTTCTTCTCCTCGTGTAATTCAGT
CAAATTTCATTCAGAACTTCTCAGATATATTCAGGTGGATTGCTTTGATA
TCCATGGAAAGCAAAAGCAACAGAAACGAACCACTACCTTCTTTGACTTC
TGCAAGGCGGAGAAGGGCATCTTGTTGTGTACTGATGTAGCTGCCCGTGG
ACTTGACATTCCTGCTGTGGACTGGATTGTGCAGTATGATCCTCCTGATG
AACCCAAGGAATAATATTCTTCGGGTGGGGTCGGGACAGCCCCGTGGAAG
AAAGGTGCAAAAGGAAATGCCCCACTTTTTCTTGATTCCAGAAAGAATTT
ACATTTTCCTTCCATATTCTGAAGGGCTGGCAAAAATCCCCTGGTTAAAA
AAATTATGAATTTTGAACCAAAAAAAACTGGGTCTAAGGTGCAGTCCCCT
TCCGGGGAAAAAATTGGGTTGGCTAACACCTATTTAATTTTGAAACCAAC
CCCCCCTAAAAATGGCGTTACGCATTTTTTATTTCCATACCAATAGATTT
CCCCACCCCCTAAGAAAGAATAAATCTTCCAAGGTATACCCCCCCCTATT
GATTTGGAAGGGGGAACCCGCCCTCGTTTTTATTTATTGTTTTTTTTTCT
CCCCCCCCCCCTAGAGGGGGAAAAATCCAAACACATAGAAAACCACGCTG
GTCCCCTCTTATAATTTTTTAAAAAAATAAAAAACCACCCCAAAAAAACT
CACACAAAAGAGAACACAAAAACAAATTGGTTTTTTTCTCATTGAAAACA
CTCCACCCCCCTTTTTATTGGAGTGGTAGGAAACAGAAGAAAGAATAATA
AAAAATAAAAATAAAAATACACACCCCCCCCACTTTTGTTTTTAT
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