EY665182

Overview
NameEY665182
Unique NameEY665182
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1045
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665182 vs. ExPASy Swiss-Prot
Match: RH55_ARATH (DEAD-box ATP-dependent RNA helicase 55 OS=Arabidopsis thaliana GN=RH55 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.445e-11
Identity = 39/103 (37.86%), Postives = 56/103 (54.37%), Query Frame = 1
Query:   82 GLQQGYCVVPSAKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYI----QVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWI 378
            GL+  Y    + ++   L   L  N +KK++VFF +C  V +   ++  I     +  F  HGK  Q+ R T    F +A  G+LLCTDVAARGLDIP + +I
Sbjct:  212 GLRNPYLKCEADQKSSQLVHLLIENKNKKLVVFFMTCACVDYWGLVISKIPSLKSISFFPTHGKMDQKGRDTALASFTEASSGVLLCTDVAARGLDIPGIVYI 314          
BLAST of EY665182 vs. ExPASy Swiss-Prot
Match: SPB4_PHANO (ATP-dependent rRNA helicase SPB4 OS=Phaeosphaeria nodorum GN=SPB4 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 3.194e-11
Identity = 53/153 (34.64%), Postives = 76/153 (49.67%), Query Frame = 1
Query:   52 DDGRT--KVTNEGLQQGYCVVPSAKRFILLYSFLK--RNLSKKVMVFFSSCNSVKFHSELLRYIQ--VDCFDIHGKQKQQKRTTTFFDFCKA-EKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKE-*YSSGGVGTAPWKKGAKGNAPLFLD 486
            +DG+   K T   LQ  Y V P + +   +   L   +   +K +++ S+C SV +   +L  +    D   +HGK   + R   F  F  +    ILL TDVAARGLDIP+VD + Q DPP +PK   +  G  G A    G +G A  FL+
Sbjct:  264 EDGKIEDKRTPASLQMSYLVTPPSHKIPAMKKILSSLQPQPQKSILYLSTCFSVDYFQHVLPEVLQGYDIVPLHGKHPDKVRRKNFNKFVDSVTPSILLTTDVAARGLDIPSVDLVFQLDPPSDPKTFIHRCGRAGRA----GRRGLAVTFLN 412          
BLAST of EY665182 vs. ExPASy Swiss-Prot
Match: DBP8_BOTFB (ATP-dependent RNA helicase dbp8 OS=Botryotinia fuckeliana (strain B05.10) GN=dbp8 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 3.194e-11
Identity = 53/169 (31.36%), Postives = 81/169 (47.93%), Query Frame = 1
Query:   34 PVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYSFL--KRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKE*YSSGGVGTAPWKKGAKGNAPLFLDSRKNLHFPSIF*RAGK 534
            PV++   D +       L Q +  VP   R   L+ FL  ++NL K +++F +   +  + + LLR +      +H K  Q++R      F  +   IL+ TDVAARGLDIP V  ++ YD P +P + Y      TA  + G KG A  F+  R      +I  R G+
Sbjct:  327 PVFVCEVDTQALAIPPSLNQMHLQVPVTHREHYLHMFLLTEKNLPKSIVIFCNRTATADYLTHLLRLLDHRVTALHSKLPQRQRIDNLGRFRASAARILVATDVAARGLDIPEVGLVINYDIPRDPDD-YIHRVGRTA--RAGRKGEAVSFVGQRDVQLIQAIENRVGR 492          
BLAST of EY665182 vs. ExPASy Swiss-Prot
Match: SPB4_ENCCU (ATP-dependent rRNA helicase SPB4 OS=Encephalitozoon cuniculi GN=SPB4 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 4.171e-11
Identity = 51/155 (32.90%), Postives = 79/155 (50.97%), Query Frame = 1
Query:   22 FQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQV-DCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKE*YSSGGVGTAPWKKGAKGNAPLFL 483
            F   PV I+V +    V  E     Y VV   ++ ++L   +     ++ +VFF++C+ V F S L+      +   IHGK  Q +R   + +F + + G+L CTDVAARG+D   VD +V +D P E        G  TA  + G+KG + LF+
Sbjct:  198 FLRNPVSINVGNNEMPVALE-----YIVVSPMEKLLVLMDIVT---GRRCIVFFATCSEVDFFSGLVSRAGFGNICKIHGKISQDERNRVYEEFFQRD-GLLFCTDVAARGIDFRGVDLVVHFDVPKEYSSIVHRSG-RTA--RNGSKGESVLFV 340          
BLAST of EY665182 vs. ExPASy Swiss-Prot
Match: DBP8_NEUCR (ATP-dependent RNA helicase dbp-8 OS=Neurospora crassa GN=dbp-8 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 4.171e-11
Identity = 51/155 (32.90%), Postives = 76/155 (49.03%), Query Frame = 1
Query:   34 PVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYSFL--KRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKE*YSSGGVGTAPWKKGAKGNAPLFLDSR 492
            PV++   D +       L+Q +  VP   R   L+ FL   +N+ K V++F +  ++  F   LLR +      +H K  Q +R      F  +   IL+ TDVAARGLDIP V  ++ YD P +P + Y      TA  + G KG+A  F+  R
Sbjct:  406 PVFVCEVDTQRLAIPATLRQMHLQVPVTHREHYLHMFLLTPQNVDKSVIIFCNRTSTADFLHHLLRLLDHRVTSLHSKLPQSQRIDNLGRFRASAARILVATDVAARGLDIPEVKIVINYDIPRDPDD-YIHRVGRTA--RAGRKGDAVTFVGQR 557          
BLAST of EY665182 vs. ExPASy Swiss-Prot
Match: SPB4_COCIM (ATP-dependent rRNA helicase SPB4 OS=Coccidioides immitis GN=SPB4 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 5.448e-11
Identity = 36/89 (40.45%), Postives = 53/89 (59.55%), Query Frame = 1
Query:  154 NLSKKVMVFFSSCNSVKFHSELLRYIQVDCF---DIHGKQKQQKRTTTFFDFCKA-EKGILLCTDVAARGLDIPAVDWIVQYDPPDEPK 408
            N  +K +++FS+C +V + S +L  +  + F    +HGK     R   F  F  +    +LL TDVAARGLDIP VD ++Q+DPP +PK
Sbjct:  274 NTPQKTILYFSTCAAVDYWSHVLPSLLPEIFVTLPLHGKHPPNVRQKNFSRFTNSVSPSVLLTTDVAARGLDIPLVDLVIQFDPPTDPK 362          
BLAST of EY665182 vs. ExPASy Swiss-Prot
Match: MAK5_EMENI (ATP-dependent RNA helicase mak5 OS=Emericella nidulans GN=mak5 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 5.448e-11
Identity = 44/134 (32.84%), Postives = 76/134 (56.72%), Query Frame = 1
Query:    7 LARLSF-QTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGK--QKQQKRTTTFFDFCKAEKG-ILLCTDVAARGLDIPAVDWIVQYDPP 396
            L +L+F +  P +IDV+        EGL++G    P+ ++ + LY+ L  +   + +VF +S ++V+  ++LL+ +Q+    +H    QK + R+   F    A  G IL+ TDVAARGLDI  +D+++ Y  P
Sbjct:  449 LQKLNFREEKPKFIDVNP--VSQMAEGLKEGIVECPAMEKDLYLYTLLLYHPKHRTLVFTNSISAVRRITQLLQTLQLPALALHSSMAQKARLRSVERFSSSTANPGTILVATDVAARGLDIKGIDFVIHYHAP 580          
BLAST of EY665182 vs. ExPASy Swiss-Prot
Match: SPB4_VANPO (ATP-dependent rRNA helicase SPB4 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=SPB4 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 7.115e-11
Identity = 36/111 (32.43%), Postives = 60/111 (54.05%), Query Frame = 1
Query:  103 VVPSAKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYI--------QVDCFDIHGKQKQQKRTTTFFDFCKA-EKGILLCTDVAARGLDIPAVDWIVQYDPPDEPK 408
            VV + K+   + S +     KK + +F +C+SV +    ++Y+        ++  + +HGK +   R  T   F +     +LL TDVAARG+DIP VD ++Q DPP +P+
Sbjct:  242 VVETDKKLEQVISIINNYKFKKCIAYFPTCHSVTYFYSFMQYLLKKGIIKEEIQIYSLHGKLQTSARIKTLETFTETISNAVLLTTDVAARGIDIPDVDLVLQLDPPTDPE 352          
BLAST of EY665182 vs. ExPASy Swiss-Prot
Match: MAK5_GIBZE (ATP-dependent RNA helicase MAK5 OS=Gibberella zeae GN=MAK5 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 7.115e-11
Identity = 40/127 (31.50%), Postives = 68/127 (53.54%), Query Frame = 1
Query:   16 LSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPP 396
            L F+  P +IDV+        EGL++G     + ++ + LY+ L  N  ++ +VF +S ++V+  + LL  + +    +H +  Q+ R  +   F  +   IL+ TDVAARGLDI  VD ++ Y  P
Sbjct:  460 LKFRGEPKFIDVNP--VSQMAEGLREGLIECGAMEKDLYLYTVLILNPGRRTLVFTNSISAVRRLTPLLTNLNLTALPLHSQMAQKARHRSLERFTASRNSILIATDVAARGLDIKEVDQVLHYHVP 584          
The following BLAST results are available for this feature:
BLAST of EY665182 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 129
Match NameE-valueIdentityDescription
RH55_ARATH2.445e-1137.86DEAD-box ATP-dependent RNA helicase 55 OS=Arabidop... [more]
SPB4_PHANO3.194e-1134.64ATP-dependent rRNA helicase SPB4 OS=Phaeosphaeria ... [more]
DBP8_BOTFB3.194e-1131.36ATP-dependent RNA helicase dbp8 OS=Botryotinia fuc... [more]
SPB4_ENCCU4.171e-1132.90ATP-dependent rRNA helicase SPB4 OS=Encephalitozoo... [more]
DBP8_NEUCR4.171e-1132.90ATP-dependent RNA helicase dbp-8 OS=Neurospora cra... [more]
SPB4_COCIM5.448e-1140.45ATP-dependent rRNA helicase SPB4 OS=Coccidioides i... [more]
MAK5_EMENI5.448e-1132.84ATP-dependent RNA helicase mak5 OS=Emericella nidu... [more]
SPB4_VANPO7.115e-1132.43ATP-dependent rRNA helicase SPB4 OS=Vanderwaltozym... [more]
MAK5_GIBZE7.115e-1131.50ATP-dependent RNA helicase MAK5 OS=Gibberella zeae... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-083-A02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665182 ID=EY665182; Name=EY665182; organism=Citrus sinensis; type=EST; length=1045bp
GAGGATCTTGCTCGCTTGTCATTTCAGACAACTCCAGTTTATATTGATGT
GGATGATGGGAGAACTAAGGTCACCAACGAAGGCCTGCAGCAAGGCTATT
GTGTGGTGCCCAGTGCCAAGAGATTTATCCTTCTATATTCCTTCTTGAAG
AGGAATCTGTCAAAGAAAGTGATGGTCTTCTTCTCCTCGTGTAATTCAGT
CAAATTTCATTCAGAACTTCTCAGATATATTCAGGTGGATTGCTTTGATA
TCCATGGAAAGCAAAAGCAACAGAAACGAACCACTACCTTCTTTGACTTC
TGCAAGGCGGAGAAGGGCATCTTGTTGTGTACTGATGTAGCTGCCCGTGG
ACTTGACATTCCTGCTGTGGACTGGATTGTGCAGTATGATCCTCCTGATG
AACCCAAGGAATAATATTCTTCGGGTGGGGTCGGGACAGCCCCGTGGAAG
AAAGGTGCAAAAGGAAATGCCCCACTTTTTCTTGATTCCAGAAAGAATTT
ACATTTTCCTTCCATATTCTGAAGGGCTGGCAAAAATCCCCTGGTTAAAA
AAATTATGAATTTTGAACCAAAAAAAACTGGGTCTAAGGTGCAGTCCCCT
TCCGGGGAAAAAATTGGGTTGGCTAACACCTATTTAATTTTGAAACCAAC
CCCCCCTAAAAATGGCGTTACGCATTTTTTATTTCCATACCAATAGATTT
CCCCACCCCCTAAGAAAGAATAAATCTTCCAAGGTATACCCCCCCCTATT
GATTTGGAAGGGGGAACCCGCCCTCGTTTTTATTTATTGTTTTTTTTTCT
CCCCCCCCCCCTAGAGGGGGAAAAATCCAAACACATAGAAAACCACGCTG
GTCCCCTCTTATAATTTTTTAAAAAAATAAAAAACCACCCCAAAAAAACT
CACACAAAAGAGAACACAAAAACAAATTGGTTTTTTTCTCATTGAAAACA
CTCCACCCCCCTTTTTATTGGAGTGGTAGGAAACAGAAGAAAGAATAATA
AAAAATAAAAATAAAAATACACACCCCCCCCACTTTTGTTTTTAT
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