EY665182

Overview
NameEY665182
Unique NameEY665182
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1045
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665182 vs. ExPASy Swiss-Prot
Match: DDX55_DROME (Probable ATP-dependent RNA helicase DDX55 homolog OS=Drosophila melanogaster GN=CG9630 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 4.306e-16
Identity = 60/164 (36.59%), Postives = 85/164 (51.83%), Query Frame = 1
Query:    4 DLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYSFLKR--NLSKKVMVFFSSCNSVKFHSELLRYI--QVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKE*YSSGGVGTAPWKKGAKGNAPLFL 483
            DL R   +  PV + V +  +  T   LQ  Y +V    +F+ L  FL     +  KVMVFF +C  V++ +E L  +  +     IHGK K  KR      F    + +LLCTDV ARGLD+P ++W+VQ+DPP          G  TA  ++G +GNA +FL
Sbjct:  213 DLIRAGLRN-PVLVSVKEKASVNTPARLQNFYRIVEPELKFVALLEFLSSPATVIGKVMVFFPTCACVEYWAEALPPLLPKRTVLGIHGKMKN-KRANVVEKFRNTPQAVLLCTDVLARGLDVPEIEWVVQWDPPSTASSFVHRVG-RTA--RQGNEGNALVFL 371          
BLAST of EY665182 vs. ExPASy Swiss-Prot
Match: RH17_ORYSJ (DEAD-box ATP-dependent RNA helicase 17 OS=Oryza sativa subsp. japonica GN=Os05g0110500 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 1.253e-15
Identity = 60/154 (38.96%), Postives = 74/154 (48.05%), Query Frame = 1
Query:   85 LQQGYCVVPSAKRFILLYSFLK----RNLSKKVMVFFSSCNSVKFHSELL-----------------RYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKE*YSSGGVGTAPWKKGAKGNAPLFL 483
            L Q Y  V    R  +L + LK    R LS KV+VF S+C+SV FH  +L                 ++I    F +HG   Q  R  +F  F   +  IL+ TDVAARGLD P V  I+QYD P E  E Y      TA  + G KG A LFL
Sbjct:  294 LVQRYVKVSCGSRLAILLTILKSLFERQLSHKVVVFLSTCDSVDFHHTVLSQLEWSPGLQLDTDKKQKFISCKVFRLHGNMDQDDRKKSFLGFSSEKSAILVSTDVAARGLDFPKVKCIIQYDSPGEASE-YVHRVGRTA--RIGEKGEALLFL 444          
BLAST of EY665182 vs. ExPASy Swiss-Prot
Match: RH17_ARATH (DEAD-box ATP-dependent RNA helicase 17 OS=Arabidopsis thaliana GN=RH17 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 6.218e-15
Identity = 71/201 (35.32%), Postives = 94/201 (46.77%), Query Frame = 1
Query:   85 LQQGYCVVPSAKRFILLYSFLK----RNLSKKVMVFFSSCNSVKFHSELLR------------------YIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKE*YSSGGVGTAPWKKGAKGNAPLFL-----DSRKNL--HFPSI-----------F*RAGKNPLVKKIMNFE 567
            L Q Y  VP   R + L S LK    R  S+KV+VFFS+ ++V FH  LL                   +++   F +HG  +Q+ R + F  F   ++ +LL TDVAARGLD P V  I+QYD P E  E Y      TA  + G KG A LFL     D  K L  H  S+           F   G  P +KK+++ E
Sbjct:  302 LVQRYLRVPCGARLVALLSVLKNLFEREASQKVVVFFSTRDAVDFHYSLLSEFQWPPNSETEEEGTKELFLKCKTFRLHGSMEQEDRRSAFGTFKTEKQAVLLSTDVAARGLDFPKVRCIIQYDCPGEATE-YVHRVGRTA--RIGEKGEALLFLQPIEIDYLKELKKHGASLTEYPLMKVLDKFPIPGNMPRIKKVLSLE 499          
BLAST of EY665182 vs. ExPASy Swiss-Prot
Match: SPB4_YEAST (ATP-dependent rRNA helicase SPB4 OS=Saccharomyces cerevisiae GN=SPB4 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.363e-14
Identity = 44/113 (38.94%), Postives = 63/113 (55.75%), Query Frame = 1
Query:   85 LQQGYCVVPSAKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYI--------QVDCFDIHGKQKQQKRTTTFFDFCKA-EKGILLCTDVAARGLDIPAVDWIVQYDPP 396
            L+  YCVV  A++  LL S L     KK +V+F +C SV +    ++Y+        +V+ F +HGK +   RT T   F  +    +L  TDVAARG+DIP VD ++Q DPP
Sbjct:  236 LKLNYCVVNPAEKLQLLVSILNNYKFKKCIVYFPTCVSVSYFYSFIQYLGKRNILVNEVEIFSLHGKLQTSARTKTLTAFTDSLSNSVLFTTDVAARGIDIPDVDLVIQLDPP 348          
BLAST of EY665182 vs. ExPASy Swiss-Prot
Match: SPB4_YEAS7 (ATP-dependent rRNA helicase SPB4 OS=Saccharomyces cerevisiae (strain YJM789) GN=SPB4 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.363e-14
Identity = 44/113 (38.94%), Postives = 63/113 (55.75%), Query Frame = 1
Query:   85 LQQGYCVVPSAKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYI--------QVDCFDIHGKQKQQKRTTTFFDFCKA-EKGILLCTDVAARGLDIPAVDWIVQYDPP 396
            L+  YCVV  A++  LL S L     KK +V+F +C SV +    ++Y+        +V+ F +HGK +   RT T   F  +    +L  TDVAARG+DIP VD ++Q DPP
Sbjct:  236 LKLNYCVVNPAEKLQLLVSILNNYKFKKCIVYFPTCVSVSYFYSFIQYLGKRNILVNEVEIFSLHGKLQTSARTKTLTAFTDSLSNSVLFTTDVAARGIDIPDVDLVIQLDPP 348          
BLAST of EY665182 vs. ExPASy Swiss-Prot
Match: SPB4_BOTFB (ATP-dependent rRNA helicase spb4 OS=Botryotinia fuckeliana (strain B05.10) GN=spb4 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.173e-13
Identity = 55/149 (36.91%), Postives = 74/149 (49.66%), Query Frame = 1
Query:   58 GRTKVTNEGLQQGYCVVPSAKRFILLYSFLKR--NLSKKVMVFFSSCNSVKFHSELLRYI---QVDCFDIHGKQKQQKRTTTFFDFCKA-EKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKE-*YSSGGVGTAPWKKGAKGNAPLFL 483
            G  K+T   LQ  Y + P   +F  L S L +     +K +++ S+C +V +   LL  +   Q     +HGK     R   F  +  A    ILL TDVAARGLDIP VD +VQ DPP +PK   +  G  G A    G KG + +FL
Sbjct:  255 GGDKMTPASLQMSYLLTPPTHKFPALLSLLSQLEPTPQKSIIYLSTCAAVDYFQPLLEAVLPKQFGLVSLHGKHPPNVRQRNFSKYVAAVSPTILLTTDVAARGLDIPQVDLVVQIDPPSDPKVFLHRCGRAGRA----GRKGLSVIFL 399          
BLAST of EY665182 vs. ExPASy Swiss-Prot
Match: SPB4_SCLS1 (ATP-dependent rRNA helicase spb4 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=spb4 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.532e-13
Identity = 55/149 (36.91%), Postives = 74/149 (49.66%), Query Frame = 1
Query:   58 GRTKVTNEGLQQGYCVVPSAKRFILLYSFLKR--NLSKKVMVFFSSCNSVKFHSELLRYI---QVDCFDIHGKQKQQKRTTTFFDFCKA-EKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKE-*YSSGGVGTAPWKKGAKGNAPLFL 483
            G  K+T   LQ  Y + P   +F  L S L +     +K +++ S+C +V +   LL  +   Q     +HGK     R   F  +  A    ILL TDVAARGLDIP VD +VQ DPP +PK   +  G  G A    G KG + +FL
Sbjct:  254 GGDKMTPASLQMSYLLTPPTHKFPALLSLLSQLQPTPQKSIIYLSTCAAVDYFQPLLEAVLPKQFALVSLHGKHPPNVRQRNFSKYVAAVSPTILLTTDVAARGLDIPQVDLVVQIDPPSDPKVFLHRCGRAGRA----GRKGLSVIFL 398          
BLAST of EY665182 vs. ExPASy Swiss-Prot
Match: DDX47_CAEEL (Putative ATP-dependent RNA helicase T26G10.1 OS=Caenorhabditis elegans GN=T26G10.1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.532e-13
Identity = 39/113 (34.51%), Postives = 62/113 (54.87%), Query Frame = 1
Query:   73 TNEGLQQGYCVVPSAKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKE 411
            T + L+Q Y  VP+  +   L   L  +     +VF ++C +    + +LR + +    +HG+  Q+KR  +   F    + IL+CTDVAARGLDIP VD ++ YD P + K+
Sbjct:  254 TVDNLKQHYIFVPNKYKETYLVYLLNEHAGNSAIVFCATCATTMQIAVMLRQLGMQAVPLHGQMSQEKRLGSLNKFKSKAREILVCTDVAARGLDIPHVDMVINYDMPSQSKD 366          
BLAST of EY665182 vs. ExPASy Swiss-Prot
Match: DDX55_CAEBR (Probable ATP-dependent RNA helicase DDX55 homolog OS=Caenorhabditis briggsae GN=CBG06798 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.000e-13
Identity = 36/120 (30.00%), Postives = 63/120 (52.50%), Query Frame = 1
Query:   43 IDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLR--YIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPP 396
            + V   R       L+  +   P+ ++  +   F+++   KKV++FF SCNSV++  ++      +   F +HGK     R      F ++  G+++ TDV ARG+DI  +DW++QYD P
Sbjct:  218 VKVSQERNSAAPSTLKNYFVECPADEKTSVCLEFIRQRTDKKVLIFFPSCNSVRYFHKIFERCLTKRPLFAVHGKCSNPHRAAQIKAFSESTNGVMISTDVMARGIDITDIDWVIQYDLP 337          
BLAST of EY665182 vs. ExPASy Swiss-Prot
Match: DBP4_ENCCU (ATP-dependent RNA helicase DBP4 OS=Encephalitozoon cuniculi GN=DBP4 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.000e-13
Identity = 40/106 (37.74%), Postives = 62/106 (58.49%), Query Frame = 1
Query:   85 LQQGYCVVPSAKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVD--CFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPP 396
            L+Q + ++ +  +   L++F+  N   K +VFFS+C  VKFH  L   +++    F + G   Q++R   F  F K + GIL CTD+ +RGLD P VD ++QYD P
Sbjct:  219 LRQYFYMMRTGDKINYLHTFIGSNPEVKGIVFFSTCKEVKFHCLLFERLKLRNRIFCLSGGMSQKQRIDVFKRFVKEKNGILFCTDLGSRGLDFPKVDVVIQYDCP 324          
The following BLAST results are available for this feature:
BLAST of EY665182 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 129
Match NameE-valueIdentityDescription
DDX55_DROME4.306e-1636.59Probable ATP-dependent RNA helicase DDX55 homolog ... [more]
RH17_ORYSJ1.253e-1538.96DEAD-box ATP-dependent RNA helicase 17 OS=Oryza sa... [more]
RH17_ARATH6.218e-1535.32DEAD-box ATP-dependent RNA helicase 17 OS=Arabidop... [more]
SPB4_YEAST2.363e-1438.94ATP-dependent rRNA helicase SPB4 OS=Saccharomyces ... [more]
SPB4_YEAS72.363e-1438.94ATP-dependent rRNA helicase SPB4 OS=Saccharomyces ... [more]
SPB4_BOTFB1.173e-1336.91ATP-dependent rRNA helicase spb4 OS=Botryotinia fu... [more]
SPB4_SCLS11.532e-1336.91ATP-dependent rRNA helicase spb4 OS=Sclerotinia sc... [more]
DDX47_CAEEL1.532e-1334.51Putative ATP-dependent RNA helicase T26G10.1 OS=Ca... [more]
DDX55_CAEBR2.000e-1330.00Probable ATP-dependent RNA helicase DDX55 homolog ... [more]
DBP4_ENCCU2.000e-1337.74ATP-dependent RNA helicase DBP4 OS=Encephalitozoon... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-083-A02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665182 ID=EY665182; Name=EY665182; organism=Citrus sinensis; type=EST; length=1045bp
GAGGATCTTGCTCGCTTGTCATTTCAGACAACTCCAGTTTATATTGATGT
GGATGATGGGAGAACTAAGGTCACCAACGAAGGCCTGCAGCAAGGCTATT
GTGTGGTGCCCAGTGCCAAGAGATTTATCCTTCTATATTCCTTCTTGAAG
AGGAATCTGTCAAAGAAAGTGATGGTCTTCTTCTCCTCGTGTAATTCAGT
CAAATTTCATTCAGAACTTCTCAGATATATTCAGGTGGATTGCTTTGATA
TCCATGGAAAGCAAAAGCAACAGAAACGAACCACTACCTTCTTTGACTTC
TGCAAGGCGGAGAAGGGCATCTTGTTGTGTACTGATGTAGCTGCCCGTGG
ACTTGACATTCCTGCTGTGGACTGGATTGTGCAGTATGATCCTCCTGATG
AACCCAAGGAATAATATTCTTCGGGTGGGGTCGGGACAGCCCCGTGGAAG
AAAGGTGCAAAAGGAAATGCCCCACTTTTTCTTGATTCCAGAAAGAATTT
ACATTTTCCTTCCATATTCTGAAGGGCTGGCAAAAATCCCCTGGTTAAAA
AAATTATGAATTTTGAACCAAAAAAAACTGGGTCTAAGGTGCAGTCCCCT
TCCGGGGAAAAAATTGGGTTGGCTAACACCTATTTAATTTTGAAACCAAC
CCCCCCTAAAAATGGCGTTACGCATTTTTTATTTCCATACCAATAGATTT
CCCCACCCCCTAAGAAAGAATAAATCTTCCAAGGTATACCCCCCCCTATT
GATTTGGAAGGGGGAACCCGCCCTCGTTTTTATTTATTGTTTTTTTTTCT
CCCCCCCCCCCTAGAGGGGGAAAAATCCAAACACATAGAAAACCACGCTG
GTCCCCTCTTATAATTTTTTAAAAAAATAAAAAACCACCCCAAAAAAACT
CACACAAAAGAGAACACAAAAACAAATTGGTTTTTTTCTCATTGAAAACA
CTCCACCCCCCTTTTTATTGGAGTGGTAGGAAACAGAAGAAAGAATAATA
AAAAATAAAAATAAAAATACACACCCCCCCCACTTTTGTTTTTAT
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