EY665182
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY665182 vs. ExPASy Swiss-Prot
Match: DDX55_DROME (Probable ATP-dependent RNA helicase DDX55 homolog OS=Drosophila melanogaster GN=CG9630 PE=2 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 4.306e-16 Identity = 60/164 (36.59%), Postives = 85/164 (51.83%), Query Frame = 1 Query: 4 DLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYSFLKR--NLSKKVMVFFSSCNSVKFHSELLRYI--QVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKE*YSSGGVGTAPWKKGAKGNAPLFL 483 DL R + PV + V + + T LQ Y +V +F+ L FL + KVMVFF +C V++ +E L + + IHGK K KR F + +LLCTDV ARGLD+P ++W+VQ+DPP G TA ++G +GNA +FL Sbjct: 213 DLIRAGLRN-PVLVSVKEKASVNTPARLQNFYRIVEPELKFVALLEFLSSPATVIGKVMVFFPTCACVEYWAEALPPLLPKRTVLGIHGKMKN-KRANVVEKFRNTPQAVLLCTDVLARGLDVPEIEWVVQWDPPSTASSFVHRVG-RTA--RQGNEGNALVFL 371
BLAST of EY665182 vs. ExPASy Swiss-Prot
Match: RH17_ORYSJ (DEAD-box ATP-dependent RNA helicase 17 OS=Oryza sativa subsp. japonica GN=Os05g0110500 PE=2 SV=2) HSP 1 Score: 84.3445 bits (207), Expect = 1.253e-15 Identity = 60/154 (38.96%), Postives = 74/154 (48.05%), Query Frame = 1 Query: 85 LQQGYCVVPSAKRFILLYSFLK----RNLSKKVMVFFSSCNSVKFHSELL-----------------RYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKE*YSSGGVGTAPWKKGAKGNAPLFL 483 L Q Y V R +L + LK R LS KV+VF S+C+SV FH +L ++I F +HG Q R +F F + IL+ TDVAARGLD P V I+QYD P E E Y TA + G KG A LFL Sbjct: 294 LVQRYVKVSCGSRLAILLTILKSLFERQLSHKVVVFLSTCDSVDFHHTVLSQLEWSPGLQLDTDKKQKFISCKVFRLHGNMDQDDRKKSFLGFSSEKSAILVSTDVAARGLDFPKVKCIIQYDSPGEASE-YVHRVGRTA--RIGEKGEALLFL 444
BLAST of EY665182 vs. ExPASy Swiss-Prot
Match: RH17_ARATH (DEAD-box ATP-dependent RNA helicase 17 OS=Arabidopsis thaliana GN=RH17 PE=2 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 6.218e-15 Identity = 71/201 (35.32%), Postives = 94/201 (46.77%), Query Frame = 1 Query: 85 LQQGYCVVPSAKRFILLYSFLK----RNLSKKVMVFFSSCNSVKFHSELLR------------------YIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKE*YSSGGVGTAPWKKGAKGNAPLFL-----DSRKNL--HFPSI-----------F*RAGKNPLVKKIMNFE 567 L Q Y VP R + L S LK R S+KV+VFFS+ ++V FH LL +++ F +HG +Q+ R + F F ++ +LL TDVAARGLD P V I+QYD P E E Y TA + G KG A LFL D K L H S+ F G P +KK+++ E Sbjct: 302 LVQRYLRVPCGARLVALLSVLKNLFEREASQKVVVFFSTRDAVDFHYSLLSEFQWPPNSETEEEGTKELFLKCKTFRLHGSMEQEDRRSAFGTFKTEKQAVLLSTDVAARGLDFPKVRCIIQYDCPGEATE-YVHRVGRTA--RIGEKGEALLFLQPIEIDYLKELKKHGASLTEYPLMKVLDKFPIPGNMPRIKKVLSLE 499
BLAST of EY665182 vs. ExPASy Swiss-Prot
Match: SPB4_YEAST (ATP-dependent rRNA helicase SPB4 OS=Saccharomyces cerevisiae GN=SPB4 PE=1 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 2.363e-14 Identity = 44/113 (38.94%), Postives = 63/113 (55.75%), Query Frame = 1 Query: 85 LQQGYCVVPSAKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYI--------QVDCFDIHGKQKQQKRTTTFFDFCKA-EKGILLCTDVAARGLDIPAVDWIVQYDPP 396 L+ YCVV A++ LL S L KK +V+F +C SV + ++Y+ +V+ F +HGK + RT T F + +L TDVAARG+DIP VD ++Q DPP Sbjct: 236 LKLNYCVVNPAEKLQLLVSILNNYKFKKCIVYFPTCVSVSYFYSFIQYLGKRNILVNEVEIFSLHGKLQTSARTKTLTAFTDSLSNSVLFTTDVAARGIDIPDVDLVIQLDPP 348
BLAST of EY665182 vs. ExPASy Swiss-Prot
Match: SPB4_YEAS7 (ATP-dependent rRNA helicase SPB4 OS=Saccharomyces cerevisiae (strain YJM789) GN=SPB4 PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 2.363e-14 Identity = 44/113 (38.94%), Postives = 63/113 (55.75%), Query Frame = 1 Query: 85 LQQGYCVVPSAKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYI--------QVDCFDIHGKQKQQKRTTTFFDFCKA-EKGILLCTDVAARGLDIPAVDWIVQYDPP 396 L+ YCVV A++ LL S L KK +V+F +C SV + ++Y+ +V+ F +HGK + RT T F + +L TDVAARG+DIP VD ++Q DPP Sbjct: 236 LKLNYCVVNPAEKLQLLVSILNNYKFKKCIVYFPTCVSVSYFYSFIQYLGKRNILVNEVEIFSLHGKLQTSARTKTLTAFTDSLSNSVLFTTDVAARGIDIPDVDLVIQLDPP 348
BLAST of EY665182 vs. ExPASy Swiss-Prot
Match: SPB4_BOTFB (ATP-dependent rRNA helicase spb4 OS=Botryotinia fuckeliana (strain B05.10) GN=spb4 PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 1.173e-13 Identity = 55/149 (36.91%), Postives = 74/149 (49.66%), Query Frame = 1 Query: 58 GRTKVTNEGLQQGYCVVPSAKRFILLYSFLKR--NLSKKVMVFFSSCNSVKFHSELLRYI---QVDCFDIHGKQKQQKRTTTFFDFCKA-EKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKE-*YSSGGVGTAPWKKGAKGNAPLFL 483 G K+T LQ Y + P +F L S L + +K +++ S+C +V + LL + Q +HGK R F + A ILL TDVAARGLDIP VD +VQ DPP +PK + G G A G KG + +FL Sbjct: 255 GGDKMTPASLQMSYLLTPPTHKFPALLSLLSQLEPTPQKSIIYLSTCAAVDYFQPLLEAVLPKQFGLVSLHGKHPPNVRQRNFSKYVAAVSPTILLTTDVAARGLDIPQVDLVVQIDPPSDPKVFLHRCGRAGRA----GRKGLSVIFL 399
BLAST of EY665182 vs. ExPASy Swiss-Prot
Match: SPB4_SCLS1 (ATP-dependent rRNA helicase spb4 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=spb4 PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 1.532e-13 Identity = 55/149 (36.91%), Postives = 74/149 (49.66%), Query Frame = 1 Query: 58 GRTKVTNEGLQQGYCVVPSAKRFILLYSFLKR--NLSKKVMVFFSSCNSVKFHSELLRYI---QVDCFDIHGKQKQQKRTTTFFDFCKA-EKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKE-*YSSGGVGTAPWKKGAKGNAPLFL 483 G K+T LQ Y + P +F L S L + +K +++ S+C +V + LL + Q +HGK R F + A ILL TDVAARGLDIP VD +VQ DPP +PK + G G A G KG + +FL Sbjct: 254 GGDKMTPASLQMSYLLTPPTHKFPALLSLLSQLQPTPQKSIIYLSTCAAVDYFQPLLEAVLPKQFALVSLHGKHPPNVRQRNFSKYVAAVSPTILLTTDVAARGLDIPQVDLVVQIDPPSDPKVFLHRCGRAGRA----GRKGLSVIFL 398
BLAST of EY665182 vs. ExPASy Swiss-Prot
Match: DDX47_CAEEL (Putative ATP-dependent RNA helicase T26G10.1 OS=Caenorhabditis elegans GN=T26G10.1 PE=2 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 1.532e-13 Identity = 39/113 (34.51%), Postives = 62/113 (54.87%), Query Frame = 1 Query: 73 TNEGLQQGYCVVPSAKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKE 411 T + L+Q Y VP+ + L L + +VF ++C + + +LR + + +HG+ Q+KR + F + IL+CTDVAARGLDIP VD ++ YD P + K+ Sbjct: 254 TVDNLKQHYIFVPNKYKETYLVYLLNEHAGNSAIVFCATCATTMQIAVMLRQLGMQAVPLHGQMSQEKRLGSLNKFKSKAREILVCTDVAARGLDIPHVDMVINYDMPSQSKD 366
BLAST of EY665182 vs. ExPASy Swiss-Prot
Match: DDX55_CAEBR (Probable ATP-dependent RNA helicase DDX55 homolog OS=Caenorhabditis briggsae GN=CBG06798 PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 2.000e-13 Identity = 36/120 (30.00%), Postives = 63/120 (52.50%), Query Frame = 1 Query: 43 IDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLR--YIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPP 396 + V R L+ + P+ ++ + F+++ KKV++FF SCNSV++ ++ + F +HGK R F ++ G+++ TDV ARG+DI +DW++QYD P Sbjct: 218 VKVSQERNSAAPSTLKNYFVECPADEKTSVCLEFIRQRTDKKVLIFFPSCNSVRYFHKIFERCLTKRPLFAVHGKCSNPHRAAQIKAFSESTNGVMISTDVMARGIDITDIDWVIQYDLP 337
BLAST of EY665182 vs. ExPASy Swiss-Prot
Match: DBP4_ENCCU (ATP-dependent RNA helicase DBP4 OS=Encephalitozoon cuniculi GN=DBP4 PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 2.000e-13 Identity = 40/106 (37.74%), Postives = 62/106 (58.49%), Query Frame = 1 Query: 85 LQQGYCVVPSAKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVD--CFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPP 396 L+Q + ++ + + L++F+ N K +VFFS+C VKFH L +++ F + G Q++R F F K + GIL CTD+ +RGLD P VD ++QYD P Sbjct: 219 LRQYFYMMRTGDKINYLHTFIGSNPEVKGIVFFSTCKEVKFHCLLFERLKLRNRIFCLSGGMSQKQRIDVFKRFVKEKNGILFCTDLGSRGLDFPKVDVVIQYDCP 324 The following BLAST results are available for this feature:
BLAST of EY665182 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 129
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Sequences
The
following sequences are available for this feature:
EST sequence >EY665182 ID=EY665182; Name=EY665182; organism=Citrus sinensis; type=EST; length=1045bpback to top |