EH117788

Overview
NameEH117788
Unique NameEH117788
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length211
Libraries
Library NameType
Different expression profile of FJWC and FJ72-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2178 contig Csv1_Contig2178:412..622. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EH117788 vs. ExPASy Swiss-Prot
Match: NTF6_TOBAC (Mitogen-activated protein kinase homolog NTF6 OS=Nicotiana tabacum GN=NTF6 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.001e-23
Identity = 49/62 (79.03%), Postives = 58/62 (93.55%), Query Frame = -1
Query:   17 QFTDVYIAAELMDTDLYQIIRSNQSLSEEHCQYFLYQLLRGLKYIHSANVIHRDLKPSNLSL 202
            +F DVYI  ELMDTDL+QIIRS+Q+L+++HCQYFLYQLLRGLKY+HSANV+HRDLKPSNL L
Sbjct:  111 EFNDVYIVYELMDTDLHQIIRSSQALTDDHCQYFLYQLLRGLKYVHSANVLHRDLKPSNLLL 172          
BLAST of EH117788 vs. ExPASy Swiss-Prot
Match: MPK13_ARATH (Mitogen-activated protein kinase 13 OS=Arabidopsis thaliana GN=MPK13 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.911e-23
Identity = 49/62 (79.03%), Postives = 57/62 (91.94%), Query Frame = -1
Query:   17 QFTDVYIAAELMDTDLYQIIRSNQSLSEEHCQYFLYQLLRGLKYIHSANVIHRDLKPSNLSL 202
            +F DVYI  ELMDTDL+QIIRS Q+L+++HCQYFLYQ+LRGLKYIHSANV+HRDLKPSNL L
Sbjct:  106 RFEDVYIVYELMDTDLHQIIRSTQTLTDDHCQYFLYQILRGLKYIHSANVLHRDLKPSNLVL 167          
BLAST of EH117788 vs. ExPASy Swiss-Prot
Match: MPK4_ARATH (Mitogen-activated protein kinase 4 OS=Arabidopsis thaliana GN=MPK4 PE=1 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 6.486e-23
Identity = 48/61 (78.69%), Postives = 56/61 (91.80%), Query Frame = -1
Query:   17 FTDVYIAAELMDTDLYQIIRSNQSLSEEHCQYFLYQLLRGLKYIHSANVIHRDLKPSNLSL 199
            F DVYI  ELMDTDL+QIIRSNQ L+++HC++FLYQLLRGLKY+HSANV+HRDLKPSNL L
Sbjct:  117 FNDVYIVYELMDTDLHQIIRSNQPLTDDHCRFFLYQLLRGLKYVHSANVLHRDLKPSNLLL 177          
BLAST of EH117788 vs. ExPASy Swiss-Prot
Match: MMK2_MEDSA (Mitogen-activated protein kinase homolog MMK2 OS=Medicago sativa GN=MMK2 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.465e-22
Identity = 46/61 (75.41%), Postives = 56/61 (91.80%), Query Frame = -1
Query:   17 FTDVYIAAELMDTDLYQIIRSNQSLSEEHCQYFLYQLLRGLKYIHSANVIHRDLKPSNLSL 199
            F  VYI +ELMDTDL+QIIRSNQ ++++HC+YF+YQLLRGLKY+HSANV+HRDLKPSNL L
Sbjct:  111 FNHVYIVSELMDTDLHQIIRSNQPMTDDHCRYFVYQLLRGLKYVHSANVLHRDLKPSNLLL 171          
BLAST of EH117788 vs. ExPASy Swiss-Prot
Match: MPK2_ORYSJ (Mitogen-activated protein kinase 2 OS=Oryza sativa subsp. japonica GN=MPK2 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.204e-22
Identity = 45/61 (73.77%), Postives = 55/61 (90.16%), Query Frame = -1
Query:   17 FTDVYIAAELMDTDLYQIIRSNQSLSEEHCQYFLYQLLRGLKYIHSANVIHRDLKPSNLSL 199
            F DVYI  ELMDTDL+ ++RSNQ L+++HCQYFLYQ+LRGLKY+HSANV+HRDL+PSNL L
Sbjct:  135 FNDVYIVYELMDTDLHHLLRSNQPLTDDHCQYFLYQVLRGLKYVHSANVLHRDLRPSNLLL 195          
BLAST of EH117788 vs. ExPASy Swiss-Prot
Match: ERK1_DICDI (Extracellular signal-regulated kinase 1 OS=Dictyostelium discoideum GN=erkA PE=2 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 4.204e-22
Identity = 47/60 (78.33%), Postives = 55/60 (91.67%), Query Frame = -1
Query:   23 QFTDVYIAAELMDTDLYQIIRSNQSLSEEHCQYFLYQLLRGLKYIHSANVIHRDLKPSNL 202
            QF DVYI +ELMDTDL+QII S Q LS++HCQYF+YQ+LRGLK+IHSANV+HRDLKPSNL
Sbjct:  222 QFEDVYIVSELMDTDLHQIITSPQPLSDDHCQYFVYQMLRGLKHIHSANVLHRDLKPSNL 281          
BLAST of EH117788 vs. ExPASy Swiss-Prot
Match: MPK7_ARATH (Mitogen-activated protein kinase 7 OS=Arabidopsis thaliana GN=MPK7 PE=2 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 1.223e-21
Identity = 44/59 (74.58%), Postives = 55/59 (93.22%), Query Frame = -1
Query:   23 FTDVYIAAELMDTDLYQIIRSNQSLSEEHCQYFLYQLLRGLKYIHSANVIHRDLKPSNL 199
            F DVY+  ELMDTDL+QII+S+QSLS++HC+YFL+QLLRGLKY+HSAN++HRDLKP NL
Sbjct:  106 FKDVYLVYELMDTDLHQIIKSSQSLSDDHCKYFLFQLLRGLKYLHSANILHRDLKPGNL 164          
BLAST of EH117788 vs. ExPASy Swiss-Prot
Match: NTF3_TOBAC (Mitogen-activated protein kinase homolog NTF3 OS=Nicotiana tabacum GN=NTF3 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.598e-21
Identity = 44/59 (74.58%), Postives = 54/59 (91.53%), Query Frame = -1
Query:   23 FTDVYIAAELMDTDLYQIIRSNQSLSEEHCQYFLYQLLRGLKYIHSANVIHRDLKPSNL 199
            F DVY+  ELMDTDL+QII+S+Q+LS +HCQYFL+QLLRGLKY+HSAN++HRDLKP NL
Sbjct:  106 FKDVYLVYELMDTDLHQIIKSSQTLSNDHCQYFLFQLLRGLKYLHSANILHRDLKPGNL 164          
BLAST of EH117788 vs. ExPASy Swiss-Prot
Match: MPK14_ARATH (Mitogen-activated protein kinase 14 OS=Arabidopsis thaliana GN=MPK14 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.598e-21
Identity = 44/61 (72.13%), Postives = 55/61 (90.16%), Query Frame = -1
Query:   23 YQFTDVYIAAELMDTDLYQIIRSNQSLSEEHCQYFLYQLLRGLKYIHSANVIHRDLKPSNL 205
            Y F DVY+  ELMD+DL QII+S+QSLS++HC+YFL+QLLRGLKY+HSAN++HRDLKP NL
Sbjct:  104 YSFRDVYLVYELMDSDLNQIIKSSQSLSDDHCKYFLFQLLRGLKYLHSANILHRDLKPGNL 164          
BLAST of EH117788 vs. ExPASy Swiss-Prot
Match: MAPK_PETHY (Mitogen-activated protein kinase homolog 1 OS=Petunia hybrida GN=MEK1 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.598e-21
Identity = 44/59 (74.58%), Postives = 54/59 (91.53%), Query Frame = -1
Query:   23 FTDVYIAAELMDTDLYQIIRSNQSLSEEHCQYFLYQLLRGLKYIHSANVIHRDLKPSNL 199
            F DVY+  ELMDTDL+QII+S+Q+LS +HCQYFL+QLLRGLKY+HSAN++HRDLKP NL
Sbjct:  106 FKDVYLVYELMDTDLHQIIKSSQTLSNDHCQYFLFQLLRGLKYLHSANILHRDLKPGNL 164          
The following BLAST results are available for this feature:
BLAST of EH117788 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 190
Match NameE-valueIdentityDescription
NTF6_TOBAC1.001e-2379.03Mitogen-activated protein kinase homolog NTF6 OS=N... [more]
MPK13_ARATH2.911e-2379.03Mitogen-activated protein kinase 13 OS=Arabidopsis... [more]
MPK4_ARATH6.486e-2378.69Mitogen-activated protein kinase 4 OS=Arabidopsis ... [more]
MMK2_MEDSA2.465e-2275.41Mitogen-activated protein kinase homolog MMK2 OS=M... [more]
MPK2_ORYSJ4.204e-2273.77Mitogen-activated protein kinase 2 OS=Oryza sativa... [more]
ERK1_DICDI4.204e-2278.33Extracellular signal-regulated kinase 1 OS=Dictyos... [more]
MPK7_ARATH1.223e-2174.58Mitogen-activated protein kinase 7 OS=Arabidopsis ... [more]
NTF3_TOBAC1.598e-2174.58Mitogen-activated protein kinase homolog NTF3 OS=N... [more]
MPK14_ARATH1.598e-2172.13Mitogen-activated protein kinase 14 OS=Arabidopsis... [more]
MAPK_PETHY1.598e-2174.58Mitogen-activated protein kinase homolog 1 OS=Petu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionfjfw17 Different expression profile of FJWC and FJ72-1 Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH117788 ID=EH117788; Name=EH117788; organism=Citrus sinensis; type=EST; length=211bp
GACGATGAGTCCTGAGTAACGAGAGATTGCTGGGCTTCAAATCCCGATGA
ATAACATTTGCTGAATGGATATACTTGAGTCCTCGAAGAAGTTGATACAA
GAAATACTGGCAGTGCTCCTCGGATAAACTTTGATTTGAGCGAATAATTT
GGTAAAGGTCAGTGTCCATGAGTTCCGCAGCAATATAGACATCAGTGAAT
TGGTACGCAGT
back to top