EH117788

Overview
NameEH117788
Unique NameEH117788
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length211
Libraries
Library NameType
Different expression profile of FJWC and FJ72-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2178 contig Csv1_Contig2178:412..622. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EH117788 vs. ExPASy Swiss-Prot
Match: MK08B_CYPCA (Mitogen-activated protein kinase 8B OS=Cyprinus carpio GN=mapk8b PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.728e-12
Identity = 33/63 (52.38%), Postives = 43/63 (68.25%), Query Frame = -1
Query:   23 TAYQFTDVYIAAELMDTDLYQIIRSNQSLSEEHCQYFLYQLLRGLKYIHSANVIHRDLKPSNL 211
            T  +F DVY+  ELMD +L Q+I+    L  E   Y LYQ+L G K++HSA +IHRDLKPSN+
Sbjct:   97 TLEEFQDVYLVMELMDANLCQVIQ--MELDHERLSYLLYQMLCGTKHLHSAGIIHRDLKPSNI 157          
BLAST of EH117788 vs. ExPASy Swiss-Prot
Match: YPC2_CAEEL (Putative serine/threonine-protein kinase C05D10.2 OS=Caenorhabditis elegans GN=C05D10.2 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 8.787e-12
Identity = 28/59 (47.46%), Postives = 42/59 (71.19%), Query Frame = -1
Query:   17 DVYIAAELMDTDLYQIIRSNQSLSEEHCQYFLYQLLRGLKYIHSANVIHRDLKPSNLSL 193
            D+Y+A E M+ DL+ +I+    L + H QY + QL R ++++HS NV+HRDLKPSN+ L
Sbjct:   87 DIYLAFEFMEADLHNVIKKGSILKDVHKQYIMCQLFRAIRFLHSGNVLHRDLKPSNVLL 145          
BLAST of EH117788 vs. ExPASy Swiss-Prot
Match: MK10_RAT (Mitogen-activated protein kinase 10 OS=Rattus norvegicus GN=Mapk10 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 8.787e-12
Identity = 32/63 (50.79%), Postives = 43/63 (68.25%), Query Frame = -1
Query:   23 TAYQFTDVYIAAELMDTDLYQIIRSNQSLSEEHCQYFLYQLLRGLKYIHSANVIHRDLKPSNL 211
            T  +F DVY+  ELMD +L Q+I+    L  E   Y LYQ+L  +K++HSA +IHRDLKPSN+
Sbjct:  135 TLEEFQDVYLVMELMDANLCQVIQ--MELDHERMSYLLYQMLSAIKHLHSAGIIHRDLKPSNI 195          
BLAST of EH117788 vs. ExPASy Swiss-Prot
Match: MK13_BOVIN (Mitogen-activated protein kinase 13 OS=Bos taurus GN=MAPK13 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.148e-11
Identity = 32/61 (52.46%), Postives = 42/61 (68.85%), Query Frame = -1
Query:   17 FTDVYIAAELMDTDLYQIIRSNQSLSEEHCQYFLYQLLRGLKYIHSANVIHRDLKPSNLSL 199
            F D Y+    M TDL +I+      SE+  QY +YQ+L+GLKYIHSA V+HRDLKP NL++
Sbjct:  100 FHDFYLVMPFMQTDLQKIM--GMEFSEDKIQYLVYQMLKGLKYIHSAGVVHRDLKPGNLAV 158          
BLAST of EH117788 vs. ExPASy Swiss-Prot
Match: MK12_HUMAN (Mitogen-activated protein kinase 12 OS=Homo sapiens GN=MAPK12 PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 1.148e-11
Identity = 30/65 (46.15%), Postives = 47/65 (72.31%), Query Frame = -1
Query:   17 TAYQFTDVYIAAELMDTDLYQIIRSNQSLSEEHCQYFLYQLLRGLKYIHSANVIHRDLKPSNLSL 211
            T   FTD Y+    M TDL ++++ ++ L E+  Q+ +YQ+L+GL+YIH+A +IHRDLKP NL++
Sbjct:   98 TLDDFTDFYLVMPFMGTDLGKLMK-HEKLGEDRIQFLVYQMLKGLRYIHAAGIIHRDLKPGNLAV 161          
BLAST of EH117788 vs. ExPASy Swiss-Prot
Match: JNK_DROME (Stress-activated protein kinase JNK OS=Drosophila melanogaster GN=bsk PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.148e-11
Identity = 31/60 (51.67%), Postives = 44/60 (73.33%), Query Frame = -1
Query:   23 QFTDVYIAAELMDTDLYQIIRSNQSLSEEHCQYFLYQLLRGLKYIHSANVIHRDLKPSNL 202
            +F DVY+  ELMD +L Q+I+ +  L  +   Y LYQ+L G+K++HSA +IHRDLKPSN+
Sbjct:   98 EFQDVYLVMELMDANLCQVIQMD--LDHDRMSYLLYQMLCGIKHLHSAGIIHRDLKPSNI 155          
BLAST of EH117788 vs. ExPASy Swiss-Prot
Match: JNK1_CAEEL (Stress-activated protein kinase jnk-1 OS=Caenorhabditis elegans GN=jnk-1 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.148e-11
Identity = 31/60 (51.67%), Postives = 44/60 (73.33%), Query Frame = -1
Query:   23 QFTDVYIAAELMDTDLYQIIRSNQSLSEEHCQYFLYQLLRGLKYIHSANVIHRDLKPSNL 202
            +F D+YI  ELMD +L Q+I+ +  L  E   Y LYQ+L G++++HSA +IHRDLKPSN+
Sbjct:  193 EFNDLYIVMELMDANLCQVIQMD--LDHERLSYLLYQMLCGIRHLHSAGIIHRDLKPSNI 250          
BLAST of EH117788 vs. ExPASy Swiss-Prot
Match: PMK2_CAEEL (Mitogen-activated protein kinase pmk-2 OS=Caenorhabditis elegans GN=pmk-2 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.499e-11
Identity = 33/64 (51.56%), Postives = 46/64 (71.88%), Query Frame = -1
Query:   17 AYQFTDVYIAAELMDTDLYQIIRSNQSLSEEHCQYFLYQLLRGLKYIHSANVIHRDLKPSNLSL 208
            A    +VY  + LM +DL  I++  Q L++E  Q  +YQ+LRGLKYIHSA +IHRDLKPSN+++
Sbjct:  121 ASSLNNVYFVSVLMGSDLQNIMKI-QRLTDEQIQLLIYQVLRGLKYIHSAGIIHRDLKPSNIAV 183          
BLAST of EH117788 vs. ExPASy Swiss-Prot
Match: MK13_MOUSE (Mitogen-activated protein kinase 13 OS=Mus musculus GN=Mapk13 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 1.499e-11
Identity = 31/61 (50.82%), Postives = 42/61 (68.85%), Query Frame = -1
Query:   17 FTDVYIAAELMDTDLYQIIRSNQSLSEEHCQYFLYQLLRGLKYIHSANVIHRDLKPSNLSL 199
            F D Y+    M TDL +I+      SE+  QY +YQ+L+GLKYIHSA ++HRDLKP NL++
Sbjct:  100 FHDFYLVMPFMQTDLQKIM--GMEFSEDKVQYLVYQMLKGLKYIHSAGIVHRDLKPGNLAV 158          
BLAST of EH117788 vs. ExPASy Swiss-Prot
Match: JNK_SUBDO (Stress-activated protein kinase JNK OS=Suberites domuncula GN=JNK PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.695e-11
Identity = 32/59 (54.24%), Postives = 41/59 (69.49%), Query Frame = -1
Query:   23 FTDVYIAAELMDTDLYQIIRSNQSLSEEHCQYFLYQLLRGLKYIHSANVIHRDLKPSNL 199
            F DVYI  ELMD +L ++I     L  +   Y LYQLL G+K++HSA +IHRDLKPSN+
Sbjct:   97 FQDVYIVMELMDANLCRVI--GIELDHDRMSYLLYQLLCGIKHLHSAGIIHRDLKPSNI 153          
The following BLAST results are available for this feature:
BLAST of EH117788 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 190
Match NameE-valueIdentityDescription
MK08B_CYPCA6.728e-1252.38Mitogen-activated protein kinase 8B OS=Cyprinus ca... [more]
YPC2_CAEEL8.787e-1247.46Putative serine/threonine-protein kinase C05D10.2 ... [more]
MK10_RAT8.787e-1250.79Mitogen-activated protein kinase 10 OS=Rattus norv... [more]
MK13_BOVIN1.148e-1152.46Mitogen-activated protein kinase 13 OS=Bos taurus ... [more]
MK12_HUMAN1.148e-1146.15Mitogen-activated protein kinase 12 OS=Homo sapien... [more]
JNK_DROME1.148e-1151.67Stress-activated protein kinase JNK OS=Drosophila ... [more]
JNK1_CAEEL1.148e-1151.67Stress-activated protein kinase jnk-1 OS=Caenorhab... [more]
PMK2_CAEEL1.499e-1151.56Mitogen-activated protein kinase pmk-2 OS=Caenorha... [more]
MK13_MOUSE1.499e-1150.82Mitogen-activated protein kinase 13 OS=Mus musculu... [more]
JNK_SUBDO5.695e-1154.24Stress-activated protein kinase JNK OS=Suberites d... [more]

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Properties
Property NameValue
Genbank descriptionfjfw17 Different expression profile of FJWC and FJ72-1 Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH117788 ID=EH117788; Name=EH117788; organism=Citrus sinensis; type=EST; length=211bp
GACGATGAGTCCTGAGTAACGAGAGATTGCTGGGCTTCAAATCCCGATGA
ATAACATTTGCTGAATGGATATACTTGAGTCCTCGAAGAAGTTGATACAA
GAAATACTGGCAGTGCTCCTCGGATAAACTTTGATTTGAGCGAATAATTT
GGTAAAGGTCAGTGTCCATGAGTTCCGCAGCAATATAGACATCAGTGAAT
TGGTACGCAGT
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