EH117786

Overview
NameEH117786
Unique NameEH117786
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length236
Libraries
Library NameType
Different expression profile of FJWC and FJ72-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EH117786 vs. ExPASy Swiss-Prot
Match: RS6_MACFA (40S ribosomal protein S6 OS=Macaca fascicularis GN=RPS6 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.156e-27
Identity = 57/71 (80.28%), Postives = 66/71 (92.96%), Query Frame = 2 
Query:   11 QFKGYVFRVSGGNDKQGFPMKQGVLLPHRVRLLMSKGHSCYRPRRTGERKRKSVRGCIVGSDLAVLSLVVV 223
            ++KGYV R+SGGNDKQGFPMKQGVL   RVRLL+SKGHSCYRPRRTGERKRKSVRGCIV ++L+VL+LV+V
Sbjct:   44 EWKGYVVRISGGNDKQGFPMKQGVLTHGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIV 114
[Close]
BLAST of EH117786 vs. ExPASy Swiss-Prot
Match: RS6_HUMAN (40S ribosomal protein S6 OS=Homo sapiens GN=RPS6 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.156e-27
Identity = 57/71 (80.28%), Postives = 66/71 (92.96%), Query Frame = 2 
Query:   11 QFKGYVFRVSGGNDKQGFPMKQGVLLPHRVRLLMSKGHSCYRPRRTGERKRKSVRGCIVGSDLAVLSLVVV 223
            ++KGYV R+SGGNDKQGFPMKQGVL   RVRLL+SKGHSCYRPRRTGERKRKSVRGCIV ++L+VL+LV+V
Sbjct:   44 EWKGYVVRISGGNDKQGFPMKQGVLTHGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIV 114
[Close]
BLAST of EH117786 vs. ExPASy Swiss-Prot
Match: RS6_CHICK (40S ribosomal protein S6 OS=Gallus gallus GN=RPS6 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.156e-27
Identity = 57/71 (80.28%), Postives = 66/71 (92.96%), Query Frame = 2 
Query:   11 QFKGYVFRVSGGNDKQGFPMKQGVLLPHRVRLLMSKGHSCYRPRRTGERKRKSVRGCIVGSDLAVLSLVVV 223
            ++KGYV R+SGGNDKQGFPMKQGVL   RVRLL+SKGHSCYRPRRTGERKRKSVRGCIV ++L+VL+LV+V
Sbjct:   44 EWKGYVVRISGGNDKQGFPMKQGVLTHGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIV 114
[Close]
BLAST of EH117786 vs. ExPASy Swiss-Prot
Match: RS6_BOVIN (40S ribosomal protein S6 OS=Bos taurus GN=RPS6 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.156e-27
Identity = 57/71 (80.28%), Postives = 66/71 (92.96%), Query Frame = 2 
Query:   11 QFKGYVFRVSGGNDKQGFPMKQGVLLPHRVRLLMSKGHSCYRPRRTGERKRKSVRGCIVGSDLAVLSLVVV 223
            ++KGYV R+SGGNDKQGFPMKQGVL   RVRLL+SKGHSCYRPRRTGERKRKSVRGCIV ++L+VL+LV+V
Sbjct:   44 EWKGYVVRISGGNDKQGFPMKQGVLTHGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIV 114
[Close]
BLAST of EH117786 vs. ExPASy Swiss-Prot
Match: RS6_ICTPU (40S ribosomal protein S6 OS=Ictalurus punctatus GN=rps6 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.510e-27
Identity = 56/71 (78.87%), Postives = 66/71 (92.96%), Query Frame = 2 
Query:   11 QFKGYVFRVSGGNDKQGFPMKQGVLLPHRVRLLMSKGHSCYRPRRTGERKRKSVRGCIVGSDLAVLSLVVV 223
            ++KGYV R+SGGNDKQGFPMKQGVL   RVRLL+SKGHSCYRPRRTGERKRKSVRGCIV ++L+VL+LV++
Sbjct:   44 EWKGYVVRISGGNDKQGFPMKQGVLTNGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVII 114
[Close]
BLAST of EH117786 vs. ExPASy Swiss-Prot
Match: RS6_YEAST (40S ribosomal protein S6 OS=Saccharomyces cerevisiae GN=RPS6A PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.576e-27
Identity = 56/71 (78.87%), Postives = 65/71 (91.55%), Query Frame = 2 
Query:   11 QFKGYVFRVSGGNDKQGFPMKQGVLLPHRVRLLMSKGHSCYRPRRTGERKRKSVRGCIVGSDLAVLSLVVV 223
            +FKGYVF++SGGNDKQGFPMKQGVLLP R++LL++K  SCYRPRR GERKRKSVRG IVG DLAVL+LV+V
Sbjct:   44 EFKGYVFKISGGNDKQGFPMKQGVLLPTRIKLLLTKNVSCYRPRRDGERKRKSVRGAIVGPDLAVLALVIV 114
[Close]
BLAST of EH117786 vs. ExPASy Swiss-Prot
Match: RS6_MANSE (40S ribosomal protein S6 OS=Manduca sexta GN=RpS6 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.576e-27
Identity = 57/71 (80.28%), Postives = 65/71 (91.55%), Query Frame = 2 
Query:   11 QFKGYVFRVSGGNDKQGFPMKQGVLLPHRVRLLMSKGHSCYRPRRTGERKRKSVRGCIVGSDLAVLSLVVV 223
            ++KGYV RV+GGNDKQGFPMKQGVL   RVRLLMSKGHSCYRPRR GERKRKSVRGCIV ++L+VL+LV+V
Sbjct:   44 EWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIV 114
[Close]
BLAST of EH117786 vs. ExPASy Swiss-Prot
Match: RS6_SPOFR (40S ribosomal protein S6 OS=Spodoptera frugiperda GN=RpS6 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.364e-27
Identity = 56/71 (78.87%), Postives = 65/71 (91.55%), Query Frame = 2 
Query:   11 QFKGYVFRVSGGNDKQGFPMKQGVLLPHRVRLLMSKGHSCYRPRRTGERKRKSVRGCIVGSDLAVLSLVVV 223
            ++KGYV R++GGNDKQGFPMKQGVL   RVRLLMSKGHSCYRPRR GERKRKSVRGCIV ++L+VL+LV+V
Sbjct:   44 EWKGYVLRIAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIV 114
[Close]
BLAST of EH117786 vs. ExPASy Swiss-Prot
Match: RS6_APLCA (40S ribosomal protein S6 OS=Aplysia californica GN=RPS6 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.364e-27
Identity = 56/71 (78.87%), Postives = 64/71 (90.14%), Query Frame = 2 
Query:   11 QFKGYVFRVSGGNDKQGFPMKQGVLLPHRVRLLMSKGHSCYRPRRTGERKRKSVRGCIVGSDLAVLSLVVV 223
            ++KGYV R+SGGNDKQGFPMKQGVL   RVRLL+ K HSCYRPRRTGERKRKSVRGCIV S+L+VLSLV++
Sbjct:   44 EWKGYVVRISGGNDKQGFPMKQGVLTATRVRLLLDKNHSCYRPRRTGERKRKSVRGCIVDSNLSVLSLVII 114
[Close]
BLAST of EH117786 vs. ExPASy Swiss-Prot
Match: RS6_GLOMM (40S ribosomal protein S6 OS=Glossina morsitans morsitans GN=RpS6 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.495e-27
Identity = 54/71 (76.06%), Postives = 65/71 (91.55%), Query Frame = 2 
Query:   11 QFKGYVFRVSGGNDKQGFPMKQGVLLPHRVRLLMSKGHSCYRPRRTGERKRKSVRGCIVGSDLAVLSLVVV 223
            ++KGY+ R+SGGNDKQGFPMKQGVL   RVRLL+ KGHSCYRPRRTGERKRKSVRGCIV ++++VL+LV+V
Sbjct:   44 EWKGYMLRISGGNDKQGFPMKQGVLTHDRVRLLLKKGHSCYRPRRTGERKRKSVRGCIVDANMSVLALVIV 114
The following BLAST results are available for this feature:
BLAST of EH117786 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
RS6_MACFA1.156e-2780.2840S ribosomal protein S6 OS=Macaca fascicularis GN... [more]
RS6_HUMAN1.156e-2780.2840S ribosomal protein S6 OS=Homo sapiens GN=RPS6 P... [more]
RS6_CHICK1.156e-2780.2840S ribosomal protein S6 OS=Gallus gallus GN=RPS6 ... [more]
RS6_BOVIN1.156e-2780.2840S ribosomal protein S6 OS=Bos taurus GN=RPS6 PE=... [more]
RS6_ICTPU1.510e-2778.8740S ribosomal protein S6 OS=Ictalurus punctatus GN... [more]
RS6_YEAST2.576e-2778.8740S ribosomal protein S6 OS=Saccharomyces cerevisi... [more]
RS6_MANSE2.576e-2780.2840S ribosomal protein S6 OS=Manduca sexta GN=RpS6 ... [more]
RS6_SPOFR3.364e-2778.8740S ribosomal protein S6 OS=Spodoptera frugiperda ... [more]
RS6_APLCA3.364e-2778.8740S ribosomal protein S6 OS=Aplysia californica GN... [more]
RS6_GLOMM7.495e-2776.0640S ribosomal protein S6 OS=Glossina morsitans mor... [more]

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Properties
Property NameValue
Genbank descriptionfjfw16 Different expression profile of FJWC and FJ72-1 Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH117786 ID=EH117786; Name=EH117786; organism=Citrus sinensis; type=EST; length=236bp
GACTGCGTACCAATTCAAGGGTTACGTTTTCCGTGTCTCTGGTGGTAACG
ATAAGCAAGGTTTCCCCATGAAGCAAGGTGTTCTCTTACCTCACCGTGTT
CGTCTCTTGATGTCCAAGGGTCACTCTTGTTATCGTCCTCGCCGTACTGG
TGAACGTAAGAGAAAGTCCGTTCGTGGTTGTATCGTTGGTTCTGACCTCG
CTGTCTTGTCTCTCGTTGTTGTTACTCAGGACTCAT
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