EH117786

Overview
NameEH117786
Unique NameEH117786
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length236
Libraries
Library NameType
Different expression profile of FJWC and FJ72-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EH117786 vs. ExPASy Swiss-Prot
Match: RS6_BRAFL (40S ribosomal protein S6 OS=Branchiostoma floridae GN=RPS6 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.495e-27
Identity = 55/71 (77.46%), Postives = 65/71 (91.55%), Query Frame = 2
Query:   11 QFKGYVFRVSGGNDKQGFPMKQGVLLPHRVRLLMSKGHSCYRPRRTGERKRKSVRGCIVGSDLAVLSLVVV 223
            ++KGY+ R+SGGNDKQGFPMKQGVL   RVRLL+ KGHSCYRPRRTGERKRKSVRGCIV S+L+VL+LV++
Sbjct:   44 EWKGYLVRISGGNDKQGFPMKQGVLTNGRVRLLLGKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLNLVIL 114          
BLAST of EH117786 vs. ExPASy Swiss-Prot
Match: RS6_AEDAL (40S ribosomal protein S6 OS=Aedes albopictus GN=RpS6 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.789e-27
Identity = 54/71 (76.06%), Postives = 64/71 (90.14%), Query Frame = 2
Query:   11 QFKGYVFRVSGGNDKQGFPMKQGVLLPHRVRLLMSKGHSCYRPRRTGERKRKSVRGCIVGSDLAVLSLVVV 223
            ++KGYVF+++GGNDKQGFPMKQGVL   RVRLL+ KGHSCYRPRRTGERKRKSVRGCIV  +L+ L+L+VV
Sbjct:   44 EWKGYVFKIAGGNDKQGFPMKQGVLTNTRVRLLLKKGHSCYRPRRTGERKRKSVRGCIVDQNLSALALIVV 114          
BLAST of EH117786 vs. ExPASy Swiss-Prot
Match: RS6_AEDAE (40S ribosomal protein S6 OS=Aedes aegypti GN=RpS6 PE=2 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 9.789e-27
Identity = 54/71 (76.06%), Postives = 64/71 (90.14%), Query Frame = 2
Query:   11 QFKGYVFRVSGGNDKQGFPMKQGVLLPHRVRLLMSKGHSCYRPRRTGERKRKSVRGCIVGSDLAVLSLVVV 223
            ++KGYVF+++GGNDKQGFPMKQGVL   RVRLL+ KGHSCYRPRRTGERKRKSVRGCIV  +L+ L+L+VV
Sbjct:   44 EWKGYVFKIAGGNDKQGFPMKQGVLTNTRVRLLLKKGHSCYRPRRTGERKRKSVRGCIVDQNLSALALIVV 114          
BLAST of EH117786 vs. ExPASy Swiss-Prot
Match: RS6_YARLI (40S ribosomal protein S6 OS=Yarrowia lipolytica GN=RPS6 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.181e-26
Identity = 55/73 (75.34%), Postives = 64/73 (87.67%), Query Frame = 2
Query:   11 QFKGYVFRVSGGNDKQGFPMKQGVLLPHRVRLLMSKGHSCYRPRRTGERKRKSVRGCIVGSDLAVLSLVVVTQ 229
            +FKGYV +++GGNDKQGFPMKQGV+ P RVRLL+SK  SCYR RR GERKRKSVRGCIV SDL+VLS+V+V Q
Sbjct:   44 EFKGYVLKITGGNDKQGFPMKQGVMHPTRVRLLLSKDSSCYRSRRAGERKRKSVRGCIVSSDLSVLSVVIVKQ 116          
BLAST of EH117786 vs. ExPASy Swiss-Prot
Match: RS6_ONCMY (40S ribosomal protein S6 OS=Oncorhynchus mykiss GN=rps6 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.858e-26
Identity = 53/71 (74.65%), Postives = 65/71 (91.55%), Query Frame = 2
Query:   11 QFKGYVFRVSGGNDKQGFPMKQGVLLPHRVRLLMSKGHSCYRPRRTGERKRKSVRGCIVGSDLAVLSLVVV 223
            ++KGY+ R+SGGNDKQGFPMKQGVL   RVRLL++KGHSCYRPRRTGERKRKSVRGCI  ++L+VL+LV++
Sbjct:   44 EWKGYMVRISGGNDKQGFPMKQGVLTHGRVRLLLAKGHSCYRPRRTGERKRKSVRGCIGDANLSVLNLVII 114          
BLAST of EH117786 vs. ExPASy Swiss-Prot
Match: RS6_DROME (40S ribosomal protein S6 OS=Drosophila melanogaster GN=RpS6 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 8.287e-26
Identity = 53/71 (74.65%), Postives = 64/71 (90.14%), Query Frame = 2
Query:   11 QFKGYVFRVSGGNDKQGFPMKQGVLLPHRVRLLMSKGHSCYRPRRTGERKRKSVRGCIVGSDLAVLSLVVV 223
            ++KGY  R++GGNDKQGFPMKQGVL   RVRLL+ KGHSCYRPRRTGERKRKSVRGCIV ++++VL+LVV+
Sbjct:   44 EWKGYQLRIAGGNDKQGFPMKQGVLTHGRVRLLLKKGHSCYRPRRTGERKRKSVRGCIVDANMSVLALVVL 114          
BLAST of EH117786 vs. ExPASy Swiss-Prot
Match: RS6_CAEEL (40S ribosomal protein S6 OS=Caenorhabditis elegans GN=rps-6 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.728e-23
Identity = 49/71 (69.01%), Postives = 60/71 (84.51%), Query Frame = 2
Query:   11 QFKGYVFRVSGGNDKQGFPMKQGVLLPHRVRLLMSKGHSCYRPRRTGERKRKSVRGCIVGSDLAVLSLVVV 223
            ++KGYV R+ GGNDKQGFPMKQG+L   RVRLL+ KG SCYR R+ GERKRKSVRGCIV ++++ LSLV+V
Sbjct:   44 EWKGYVVRIGGGNDKQGFPMKQGILTNGRVRLLLKKGQSCYRERKNGERKRKSVRGCIVDANMSALSLVIV 114          
BLAST of EH117786 vs. ExPASy Swiss-Prot
Match: RS61_ARATH (40S ribosomal protein S6-1 OS=Arabidopsis thaliana GN=RPS6A PE=1 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 1.120e-22
Identity = 51/73 (69.86%), Postives = 61/73 (83.56%), Query Frame = 2
Query:   11 QFKGYVFRVSGGNDKQGFPMKQGVLLPHRVRLLMSKGHSCYR--PRRTGERKRKSVRGCIVGSDLAVLSLVVV 223
            +FKGYVF++ GG DKQGFPMKQGVL P RVRLL+ +G  C+R   RRTGER+RKSVRGCIV  DL+VL+LV+V
Sbjct:   44 EFKGYVFKIKGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIV 116          
BLAST of EH117786 vs. ExPASy Swiss-Prot
Match: RS62_ARATH (40S ribosomal protein S6-2 OS=Arabidopsis thaliana GN=RPS6B PE=1 SV=3)

HSP 1 Score: 104.76 bits (260), Expect = 1.463e-22
Identity = 51/73 (69.86%), Postives = 61/73 (83.56%), Query Frame = 2
Query:   11 QFKGYVFRVSGGNDKQGFPMKQGVLLPHRVRLLMSKGHSCYR--PRRTGERKRKSVRGCIVGSDLAVLSLVVV 223
            +FKGYVF++ GG DKQGFPMKQGVL P RVRLL+ +G  C+R   RRTGER+RKSVRGCIV  DL+VL+LV+V
Sbjct:   44 EFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIV 116          
BLAST of EH117786 vs. ExPASy Swiss-Prot
Match: RS6_ASPOF (40S ribosomal protein S6 OS=Asparagus officinalis GN=rps6 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.558e-22
Identity = 50/73 (68.49%), Postives = 60/73 (82.19%), Query Frame = 2
Query:   11 QFKGYVFRVSGGNDKQGFPMKQGVLLPHRVRLLMSKGHSCYR--PRRTGERKRKSVRGCIVGSDLAVLSLVVV 223
            +FKGYVF++ GG DKQGFPMKQGVL P RVRLL+ +G  C+R   RR GER+RKSVRGCIV  DL+VL+LV+V
Sbjct:   44 EFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIV 116          
The following BLAST results are available for this feature:
BLAST of EH117786 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
RS6_BRAFL7.495e-2777.4640S ribosomal protein S6 OS=Branchiostoma floridae... [more]
RS6_AEDAL9.789e-2776.0640S ribosomal protein S6 OS=Aedes albopictus GN=Rp... [more]
RS6_AEDAE9.789e-2776.0640S ribosomal protein S6 OS=Aedes aegypti GN=RpS6 ... [more]
RS6_YARLI2.181e-2675.3440S ribosomal protein S6 OS=Yarrowia lipolytica GN... [more]
RS6_ONCMY4.858e-2674.6540S ribosomal protein S6 OS=Oncorhynchus mykiss GN... [more]
RS6_DROME8.287e-2674.6540S ribosomal protein S6 OS=Drosophila melanogaste... [more]
RS6_CAEEL1.728e-2369.0140S ribosomal protein S6 OS=Caenorhabditis elegans... [more]
RS61_ARATH1.120e-2269.8640S ribosomal protein S6-1 OS=Arabidopsis thaliana... [more]
RS62_ARATH1.463e-2269.8640S ribosomal protein S6-2 OS=Arabidopsis thaliana... [more]
RS6_ASPOF5.558e-2268.4940S ribosomal protein S6 OS=Asparagus officinalis ... [more]

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Properties
Property NameValue
Genbank descriptionfjfw16 Different expression profile of FJWC and FJ72-1 Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH117786 ID=EH117786; Name=EH117786; organism=Citrus sinensis; type=EST; length=236bp
GACTGCGTACCAATTCAAGGGTTACGTTTTCCGTGTCTCTGGTGGTAACG
ATAAGCAAGGTTTCCCCATGAAGCAAGGTGTTCTCTTACCTCACCGTGTT
CGTCTCTTGATGTCCAAGGGTCACTCTTGTTATCGTCCTCGCCGTACTGG
TGAACGTAAGAGAAAGTCCGTTCGTGGTTGTATCGTTGGTTCTGACCTCG
CTGTCTTGTCTCTCGTTGTTGTTACTCAGGACTCAT
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