EH117786

Overview
NameEH117786
Unique NameEH117786
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length236
Libraries
Library NameType
Different expression profile of FJWC and FJ72-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EH117786 vs. ExPASy Swiss-Prot
Match: RS6_TOBAC (40S ribosomal protein S6 (Fragment) OS=Nicotiana tabacum GN=RPS6 PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 6.146e-21
Identity = 49/71 (69.01%), Postives = 58/71 (81.69%), Query Frame = 2
Query:   17 KGYVFRVSGGNDKQGFPMKQGVLLPHRVRLLMSKGHSCYR--PRRTGERKRKSVRGCIVGSDLAVLSLVVV 223
            KGYVF++ GG DKQGFPMKQGVL P RVRLL+ +G  C+R   RR GER+RKSVRGCIV  DL+VL+LV+V
Sbjct:    1 KGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLYRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIV 71          
BLAST of EH117786 vs. ExPASy Swiss-Prot
Match: RS6_DICDI (40S ribosomal protein S6 OS=Dictyostelium discoideum GN=rps6 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.369e-20
Identity = 44/71 (61.97%), Postives = 55/71 (77.46%), Query Frame = 2
Query:   11 QFKGYVFRVSGGNDKQGFPMKQGVLLPHRVRLLMSKGHSCYRPRRTGERKRKSVRGCIVGSDLAVLSLVVV 223
            +FKGYVF+++GGND +GFPM QGV  P RVRLL+     C++P R GERKRKSVRGCIV  D+A L L++V
Sbjct:   44 EFKGYVFKITGGNDTEGFPMMQGVGAPTRVRLLLDGRSGCFKPSRDGERKRKSVRGCIVAEDIASLQLIIV 114          
BLAST of EH117786 vs. ExPASy Swiss-Prot
Match: RS6_ENCCU (40S ribosomal protein S6 OS=Encephalitozoon cuniculi GN=RPS6 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.571e-14
Identity = 36/71 (50.70%), Postives = 51/71 (71.83%), Query Frame = 2
Query:   11 QFKGYVFRVSGGNDKQGFPMKQGVLLPHRVRLLMSKGHSCYRPRRTGERKRKSVRGCIVGSDLAVLSLVVV 223
            +F+G +  ++GG+D QGFPM  G L   RVR L+SKG + YR RR G R+RKSVRG IV  ++ VL+L+++
Sbjct:   29 EFEGTIMEITGGDDYQGFPMVSGHLTKKRVRPLLSKGDAGYRCRRKGVRRRKSVRGSIVSEEICVLNLIIL 99          
BLAST of EH117786 vs. ExPASy Swiss-Prot
Match: RS6_LEIMA (40S ribosomal protein S6 OS=Leishmania major GN=RPS6 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.503e-14
Identity = 35/72 (48.61%), Postives = 52/72 (72.22%), Query Frame = 2
Query:   11 QFKGYVFRVSGGNDKQGFPMKQGVLLPHRVRLLMSKGHSCYRPRR--TGERKRKSVRGCIVGSDLAVLSLVV 220
            +FKGY+FR+ GG+DK GFPM  GVL   RV LL+ +G   +   R   GER+RK+VRGC++ SD+A++++ +
Sbjct:   45 EFKGYIFRLRGGSDKDGFPMVPGVLASSRVSLLVKRGAIGFNTFRGYQGERRRKNVRGCVLASDIALVNVTI 116          
BLAST of EH117786 vs. ExPASy Swiss-Prot
Match: RS6_LEIIN (40S ribosomal protein S6 OS=Leishmania infantum GN=RPS6 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.503e-14
Identity = 35/72 (48.61%), Postives = 52/72 (72.22%), Query Frame = 2
Query:   11 QFKGYVFRVSGGNDKQGFPMKQGVLLPHRVRLLMSKGHSCYRPRR--TGERKRKSVRGCIVGSDLAVLSLVV 220
            +FKGY+FR+ GG+DK GFPM  GVL   RV LL+ +G   +   R   GER+RK+VRGC++ SD+A++++ +
Sbjct:   45 EFKGYIFRLRGGSDKDGFPMVPGVLASSRVSLLVKRGAIGFNTFRGYQGERRRKNVRGCVLASDIALVNVTI 116          
BLAST of EH117786 vs. ExPASy Swiss-Prot
Match: RS6E_METKA (30S ribosomal protein S6e OS=Methanopyrus kandleri GN=rps6e PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.765e-11
Identity = 32/68 (47.06%), Postives = 46/68 (67.65%), Query Frame = 2
Query:   20 GYVFRVSGGNDKQGFPMKQGVLLPHRVRLLMSKGHSCYRPRRTGERKRKSVRGCIVGSDLAVLSLVVV 223
            GY  +++GG DK GFPM+  +  P RVRLL+S G   +RP R GER+RK+VRG  +  D+  ++ V+V
Sbjct:   47 GYKLKITGGTDKDGFPMRPDIHGPVRVRLLLS-GPPGFRPERKGERRRKTVRGNTISEDIVQVNTVIV 113          
The following BLAST results are available for this feature:
BLAST of EH117786 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
RS6_TOBAC6.146e-2169.0140S ribosomal protein S6 (Fragment) OS=Nicotiana t... [more]
RS6_DICDI1.369e-2061.9740S ribosomal protein S6 OS=Dictyostelium discoide... [more]
RS6_ENCCU5.571e-1450.7040S ribosomal protein S6 OS=Encephalitozoon cunicu... [more]
RS6_LEIMA9.503e-1448.6140S ribosomal protein S6 OS=Leishmania major GN=RP... [more]
RS6_LEIIN9.503e-1448.6140S ribosomal protein S6 OS=Leishmania infantum GN... [more]
RS6E_METKA5.765e-1147.0630S ribosomal protein S6e OS=Methanopyrus kandleri... [more]

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Properties
Property NameValue
Genbank descriptionfjfw16 Different expression profile of FJWC and FJ72-1 Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH117786 ID=EH117786; Name=EH117786; organism=Citrus sinensis; type=EST; length=236bp
GACTGCGTACCAATTCAAGGGTTACGTTTTCCGTGTCTCTGGTGGTAACG
ATAAGCAAGGTTTCCCCATGAAGCAAGGTGTTCTCTTACCTCACCGTGTT
CGTCTCTTGATGTCCAAGGGTCACTCTTGTTATCGTCCTCGCCGTACTGG
TGAACGTAAGAGAAAGTCCGTTCGTGGTTGTATCGTTGGTTCTGACCTCG
CTGTCTTGTCTCTCGTTGTTGTTACTCAGGACTCAT
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