EH117779

Overview
NameEH117779
Unique NameEH117779
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length275
Libraries
Library NameType
Different expression profile of FJWC and FJ72-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4023 contig Csv1_Contig4023:297..571. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EH117779 vs. ExPASy Swiss-Prot
Match: RL13_HUMAN (60S ribosomal protein L13 OS=Homo sapiens GN=RPL13 PE=1 SV=4)

HSP 1 Score: 90.5077 bits (223), Expect = 2.836e-18
Identity = 43/72 (59.72%), Postives = 56/72 (77.78%), Query Frame = 1
Query:   13 IHKKLAPTIGVSVDHRRKNRSLEGLQSNVQRPKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPI 228
            IHKK+A TIG+SVD RR+N+S E LQ+NVQR K Y++KL++FPR+    K GDS+ EEL  ATQ+ GP MP+
Sbjct:   86 IHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPV 157          
BLAST of EH117779 vs. ExPASy Swiss-Prot
Match: RL13_CHICK (60S ribosomal protein L13 OS=Gallus gallus GN=RPL13 PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 3.704e-18
Identity = 43/72 (59.72%), Postives = 56/72 (77.78%), Query Frame = 1
Query:   13 IHKKLAPTIGVSVDHRRKNRSLEGLQSNVQRPKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPI 228
            I+K+ A TIG+SVD RR+N+S E LQ+NVQR K Y++KL++FPR+    K GDS+PEEL  ATQ+ GP MPI
Sbjct:   86 INKRFARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSPEELKMATQLSGPVMPI 157          
BLAST of EH117779 vs. ExPASy Swiss-Prot
Match: RL13_BOVIN (60S ribosomal protein L13 OS=Bos taurus GN=RPL13 PE=2 SV=3)

HSP 1 Score: 88.9669 bits (219), Expect = 8.252e-18
Identity = 43/72 (59.72%), Postives = 55/72 (76.39%), Query Frame = 1
Query:   13 IHKKLAPTIGVSVDHRRKNRSLEGLQSNVQRPKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPI 228
            IHKK+A TIG+SVD RR+N+  E LQ+NVQR K Y++KL++FPR+    K GDS+ EEL  ATQ+ GP MPI
Sbjct:   86 IHKKVARTIGISVDPRRRNKCTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPI 157          
BLAST of EH117779 vs. ExPASy Swiss-Prot
Match: RL13_CRIGR (60S ribosomal protein L13 OS=Cricetulus griseus GN=RPL13 PE=2 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 2.401e-17
Identity = 43/72 (59.72%), Postives = 55/72 (76.39%), Query Frame = 1
Query:   13 IHKKLAPTIGVSVDHRRKNRSLEGLQSNVQRPKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPI 228
            IHKK+A TIG+SVD RR+N+S E LQ+NVQR K Y++KL++FPR+    K GDS+ EEL  ATQ+ GP M I
Sbjct:   86 IHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMRI 157          
BLAST of EH117779 vs. ExPASy Swiss-Prot
Match: RL13_DROME (60S ribosomal protein L13 OS=Drosophila melanogaster GN=RpL13 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.556e-16
Identity = 40/79 (50.63%), Postives = 56/79 (70.89%), Query Frame = 1
Query:   13 IHKKLAPTIGVSVDHRRKNRSLEGLQSNVQRPKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTV 249
            I    A TIG++VD RRKN+SLE  Q N+QR K Y++KL++FP   +K +AG+S+ EE   ATQ++GP +PI  E+P V
Sbjct:   85 IGANFAKTIGIAVDRRRKNKSLESRQRNIQRLKEYRSKLILFPINEKKIRAGESSLEECKLATQLKGPVLPIKNEQPAV 163          
BLAST of EH117779 vs. ExPASy Swiss-Prot
Match: RL13_ICTPU (60S ribosomal protein L13 OS=Ictalurus punctatus GN=rpl13 PE=2 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 3.467e-16
Identity = 42/86 (48.84%), Postives = 59/86 (68.60%), Query Frame = 1
Query:   13 IHKKLAPTIGVSVDHRRKNRSLEGLQSNVQRPKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMP--IAPEKPTVELVTQ 264
            I+K++A TIG++VD RR+NRS E L  NVQR K Y++KL++FPR+    K GDS  EE+  ATQ+ GP MP  I  +K    ++T+
Sbjct:   86 INKRVARTIGIAVDPRRRNRSTESLHVNVQRLKVYRSKLILFPRKVSAPKKGDSTEEEVKMATQLTGPVMPIKIVHKKEKARMITE 171          
BLAST of EH117779 vs. ExPASy Swiss-Prot
Match: RL13_LUMRU (60S ribosomal protein L13 OS=Lumbricus rubellus GN=RPL13 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.902e-14
Identity = 40/80 (50.00%), Postives = 56/80 (70.00%), Query Frame = 1
Query:   13 IHKKLAPTIGVSVDHRRKNRSLEGLQSNVQRPKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMP----IAPEK 240
            I+KK A  IG+SVD RR+N+S+E LQ NVQR K Y++KL++FP++  K   GD+  EE+  ATQ++G  +P    I PEK
Sbjct:   62 INKKEARAIGISVDVRRRNKSVESLQLNVQRLKEYRSKLILFPKKLSKPNKGDATEEEMKLATQLKGKLLPRTAWIKPEK 141          
BLAST of EH117779 vs. ExPASy Swiss-Prot
Match: RL13_SCHMA (60S ribosomal protein L13 OS=Schistosoma mansoni GN=RPL13 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.535e-14
Identity = 37/72 (51.39%), Postives = 52/72 (72.22%), Query Frame = 1
Query:   13 IHKKLAPTIGVSVDHRRKNRSLEGLQSNVQRPKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPI 228
            ++ K A TIG++VDHRR+N S+EGLQ NV R K YKAKL++FP    K +A D+  +E+  ATQ++ P +PI
Sbjct:   85 LNPKFARTIGIAVDHRRRNVSVEGLQRNVARLKAYKAKLILFPLNPAKPQAMDAKADEVKKATQLRRPVLPI 156          
BLAST of EH117779 vs. ExPASy Swiss-Prot
Match: RL13_CAEEL (60S ribosomal protein L13 OS=Caenorhabditis elegans GN=rpl-13 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.588e-13
Identity = 35/73 (47.95%), Postives = 52/73 (71.23%), Query Frame = 1
Query:   13 IHKKLAPTIGVSVDHRRKNRSLEGLQSNVQRPKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIA 231
            I +  A TIG++VD RR N++ EGL++N  R K YKAKL++FP++A   K GDS+ EEL  A Q++G  +P++
Sbjct:   86 ISQAQARTIGIAVDVRRTNKTAEGLKANADRLKEYKAKLILFPKKASAPKKGDSSAEELKVAAQLRGDVLPLS 158          
BLAST of EH117779 vs. ExPASy Swiss-Prot
Match: RL13_SPOFR (60S ribosomal protein L13 OS=Spodoptera frugiperda GN=RpL13 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.044e-12
Identity = 35/77 (45.45%), Postives = 53/77 (68.83%), Query Frame = 1
Query:   13 IHKKLAPTIGVSVDHRRKNRSLEGLQSNVQRPKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKP 243
            ++   A TIG++VD RR+N+S+E LQ NVQR K Y+A+L++FP + +K   G++  EE   ATQ++GP MP+    P
Sbjct:   85 LNPAFARTIGIAVDPRRRNKSVESLQVNVQRLKEYRARLILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQPAP 160          
The following BLAST results are available for this feature:
BLAST of EH117779 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
RL13_HUMAN2.836e-1859.7260S ribosomal protein L13 OS=Homo sapiens GN=RPL13... [more]
RL13_CHICK3.704e-1859.7260S ribosomal protein L13 OS=Gallus gallus GN=RPL1... [more]
RL13_BOVIN8.252e-1859.7260S ribosomal protein L13 OS=Bos taurus GN=RPL13 P... [more]
RL13_CRIGR2.401e-1759.7260S ribosomal protein L13 OS=Cricetulus griseus GN... [more]
RL13_DROME1.556e-1650.6360S ribosomal protein L13 OS=Drosophila melanogast... [more]
RL13_ICTPU3.467e-1648.8460S ribosomal protein L13 OS=Ictalurus punctatus G... [more]
RL13_LUMRU1.902e-1450.0060S ribosomal protein L13 OS=Lumbricus rubellus GN... [more]
RL13_SCHMA5.535e-1451.3960S ribosomal protein L13 OS=Schistosoma mansoni G... [more]
RL13_CAEEL3.588e-1347.9560S ribosomal protein L13 OS=Caenorhabditis elegan... [more]
RL13_SPOFR1.044e-1245.4560S ribosomal protein L13 OS=Spodoptera frugiperda... [more]

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Properties
Property NameValue
Genbank descriptionfjfw5 Different expression profile of FJWC and FJ72-1 Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH117779 ID=EH117779; Name=EH117779; organism=Citrus sinensis; type=EST; length=275bp
GACTGCGTACCAATTCACAAGAAACTGGCTCCGACAATTGGTGTTTCAGT
CGATCATCGACGCAAGAACCGTTCTCTTGAGGGTCTTCAATCTAATGTTC
AGAGGCCCAAGACTTACAAGGCTAAGTTGGTTGTTTTCCCAAGACGTGCT
CGCAAGTTCAAGGCTGGTGATTCTGCCCCTGAGGAATTGGCAACAGCAAC
TCAAGTACAAGGACCTTACATGCCCATTGCTCCTGAGAAGCCTACTGTCG
AGCTGGTTACTCAGGGACTCATCGT
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