EH117778

Overview
NameEH117778
Unique NameEH117778
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length274
Libraries
Library NameType
Different expression profile of FJWC and FJ72-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4023 contig Csv1_Contig4023:298..571. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EH117778 vs. ExPASy Swiss-Prot
Match: RL13_CHLSW (60S ribosomal protein L13 OS=Chlamydomonas sp. (strain W80) GN=RPL13 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.734e-19
Identity = 44/82 (53.66%), Postives = 61/82 (74.39%), Query Frame = -3
Query:   18 IHKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVEPV 263
            I  K APT+G++VDHRRKNRSLE LQ+NVQRLKTY+A LV+FPR  +K KA +++  + + A+Q +G  +P+   KP +E V
Sbjct:   85 IPAKFAPTVGIAVDHRRKNRSLETLQANVQRLKTYRASLVIFPRNMKKPKAFEASAADCSAASQAKGELLPLKGTKPALELV 166          
BLAST of EH117778 vs. ExPASy Swiss-Prot
Match: RL13_CHICK (60S ribosomal protein L13 OS=Gallus gallus GN=RPL13 PE=2 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 5.734e-19
Identity = 44/72 (61.11%), Postives = 57/72 (79.17%), Query Frame = -3
Query:   48 IHKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPI 263
            I+K+ A TIG+SVD RR+N+S E LQ+NVQRLK Y++KL++FPR+    K GDS+PEEL  ATQ+ GP MPI
Sbjct:   86 INKRFARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSPEELKMATQLSGPVMPI 157          
BLAST of EH117778 vs. ExPASy Swiss-Prot
Match: RL13_BOVIN (60S ribosomal protein L13 OS=Bos taurus GN=RPL13 PE=2 SV=3)

HSP 1 Score: 91.6633 bits (226), Expect = 1.277e-18
Identity = 44/72 (61.11%), Postives = 56/72 (77.78%), Query Frame = -3
Query:   48 IHKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPI 263
            IHKK+A TIG+SVD RR+N+  E LQ+NVQRLK Y++KL++FPR+    K GDS+ EEL  ATQ+ GP MPI
Sbjct:   86 IHKKVARTIGISVDPRRRNKCTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPI 157          
BLAST of EH117778 vs. ExPASy Swiss-Prot
Match: RL13_CRIGR (60S ribosomal protein L13 OS=Cricetulus griseus GN=RPL13 PE=2 SV=3)

HSP 1 Score: 90.1225 bits (222), Expect = 3.717e-18
Identity = 44/72 (61.11%), Postives = 56/72 (77.78%), Query Frame = -3
Query:   48 IHKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPI 263
            IHKK+A TIG+SVD RR+N+S E LQ+NVQRLK Y++KL++FPR+    K GDS+ EEL  ATQ+ GP M I
Sbjct:   86 IHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMRI 157          
BLAST of EH117778 vs. ExPASy Swiss-Prot
Match: RL13_DROME (60S ribosomal protein L13 OS=Drosophila melanogaster GN=RpL13 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.845e-17
Identity = 44/88 (50.00%), Postives = 61/88 (69.32%), Query Frame = -3
Query:    9 IHKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTV---EPVTQD 263
            I    A TIG++VD RRKN+SLE  Q N+QRLK Y++KL++FP   +K +AG+S+ EE   ATQ++GP +PI  E+P V     VT+D
Sbjct:   85 IGANFAKTIGIAVDRRRKNKSLESRQRNIQRLKEYRSKLILFPINEKKIRAGESSLEECKLATQLKGPVLPIKNEQPAVVEFREVTKD 172          
BLAST of EH117778 vs. ExPASy Swiss-Prot
Match: RL13_ICTPU (60S ribosomal protein L13 OS=Ictalurus punctatus GN=rpl13 PE=2 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 7.010e-17
Identity = 41/72 (56.94%), Postives = 54/72 (75.00%), Query Frame = -3
Query:   48 IHKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPI 263
            I+K++A TIG++VD RR+NRS E L  NVQRLK Y++KL++FPR+    K GDS  EE+  ATQ+ GP MPI
Sbjct:   86 INKRVARTIGIAVDPRRRNRSTESLHVNVQRLKVYRSKLILFPRKVSAPKKGDSTEEEVKMATQLTGPVMPI 157          
BLAST of EH117778 vs. ExPASy Swiss-Prot
Match: RL13_LUMRU (60S ribosomal protein L13 OS=Lumbricus rubellus GN=RPL13 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.945e-15
Identity = 41/80 (51.25%), Postives = 57/80 (71.25%), Query Frame = -3
Query:   36 IHKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMP----IAPEK 263
            I+KK A  IG+SVD RR+N+S+E LQ NVQRLK Y++KL++FP++  K   GD+  EE+  ATQ++G  +P    I PEK
Sbjct:   62 INKKEARAIGISVDVRRRNKSVESLQLNVQRLKEYRSKLILFPKKLSKPNKGDATEEEMKLATQLKGKLLPRTAWIKPEK 141          
BLAST of EH117778 vs. ExPASy Swiss-Prot
Match: RL13_SCHMA (60S ribosomal protein L13 OS=Schistosoma mansoni GN=RPL13 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.569e-15
Identity = 38/72 (52.78%), Postives = 53/72 (73.61%), Query Frame = -3
Query:   48 IHKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPI 263
            ++ K A TIG++VDHRR+N S+EGLQ NV RLK YKAKL++FP    K +A D+  +E+  ATQ++ P +PI
Sbjct:   85 LNPKFARTIGIAVDHRRRNVSVEGLQRNVARLKAYKAKLILFPLNPAKPQAMDAKADEVKKATQLRRPVLPI 156          
BLAST of EH117778 vs. ExPASy Swiss-Prot
Match: RL13_CAEEL (60S ribosomal protein L13 OS=Caenorhabditis elegans GN=rpl-13 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.554e-14
Identity = 36/73 (49.32%), Postives = 53/73 (72.60%), Query Frame = -3
Query:   45 IHKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIA 263
            I +  A TIG++VD RR N++ EGL++N  RLK YKAKL++FP++A   K GDS+ EEL  A Q++G  +P++
Sbjct:   86 ISQAQARTIGIAVDVRRTNKTAEGLKANADRLKEYKAKLILFPKKASAPKKGDSSAEELKVAAQLRGDVLPLS 158          
BLAST of EH117778 vs. ExPASy Swiss-Prot
Match: RL13_SPOFR (60S ribosomal protein L13 OS=Spodoptera frugiperda GN=RpL13 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.616e-13
Identity = 36/77 (46.75%), Postives = 54/77 (70.13%), Query Frame = -3
Query:   33 IHKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKP 263
            ++   A TIG++VD RR+N+S+E LQ NVQRLK Y+A+L++FP + +K   G++  EE   ATQ++GP MP+    P
Sbjct:   85 LNPAFARTIGIAVDPRRRNKSVESLQVNVQRLKEYRARLILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQPAP 160          
The following BLAST results are available for this feature:
BLAST of EH117778 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
RL13_CHLSW5.734e-1953.6660S ribosomal protein L13 OS=Chlamydomonas sp. (st... [more]
RL13_CHICK5.734e-1961.1160S ribosomal protein L13 OS=Gallus gallus GN=RPL1... [more]
RL13_BOVIN1.277e-1861.1160S ribosomal protein L13 OS=Bos taurus GN=RPL13 P... [more]
RL13_CRIGR3.717e-1861.1160S ribosomal protein L13 OS=Cricetulus griseus GN... [more]
RL13_DROME1.845e-1750.0060S ribosomal protein L13 OS=Drosophila melanogast... [more]
RL13_ICTPU7.010e-1756.9460S ribosomal protein L13 OS=Ictalurus punctatus G... [more]
RL13_LUMRU2.945e-1551.2560S ribosomal protein L13 OS=Lumbricus rubellus GN... [more]
RL13_SCHMA8.569e-1552.7860S ribosomal protein L13 OS=Schistosoma mansoni G... [more]
RL13_CAEEL5.554e-1449.3260S ribosomal protein L13 OS=Caenorhabditis elegan... [more]
RL13_SPOFR1.616e-1346.7560S ribosomal protein L13 OS=Spodoptera frugiperda... [more]

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Properties
Property NameValue
Genbank descriptionfjfw38 Different expression profile of FJWC and FJ72-1 Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH117778 ID=EH117778; Name=EH117778; organism=Citrus sinensis; type=EST; length=274bp
GACGATGAGTCCTGAGTAACAGGCTCGACAGTAGGCTTCTCAGGAGCAAT
GGGCATGTAAGGTCCTTGTACTTGAGTTGCTGTTGCCAATTCCTCAGGGG
CAGAATCACCAGCCTTGAACTTGCGAGCACGTCTTGGGAAAACAACCAAC
TTAGCCTTGTAAGTCTTGAGCCTCTGAACATTAGATTGAAGACCCTCAAG
AGAACGGTTCTTGCGTCGATGATCGACTGAAACACCAATTGTCGGAGCCA
GTTTCTTGTGAATTGGTACGCAGT
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