EH117778

Overview
NameEH117778
Unique NameEH117778
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length274
Libraries
Library NameType
Different expression profile of FJWC and FJ72-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4023 contig Csv1_Contig4023:298..571. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EH117778 vs. ExPASy Swiss-Prot
Match: RL13_SCHPO (60S ribosomal protein L13 OS=Schizosaccharomyces pombe GN=rpl13 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.368e-12
Identity = 38/87 (43.68%), Postives = 56/87 (64.37%), Query Frame = -3 
Query:    6 IHKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEK-PTVEPVTQDS 263
            + +++A TIG+ VDHRR+NRS E LQ NV+R+K Y A L+VFPR+A + K GD+     A  T V    +PI  E     +P+T+++
Sbjct:   85 VSRRVASTIGIPVDHRRRNRSEESLQRNVERIKVYLAHLIVFPRKAGQPKKGDATDVSGAEQTDV-AAVLPITQEAVEEAKPITEEA 170
The following BLAST results are available for this feature:
BLAST of EH117778 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
RL13_SCHPO1.368e-1243.6860S ribosomal protein L13 OS=Schizosaccharomyces p... [more]

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Properties
Property NameValue
Genbank descriptionfjfw38 Different expression profile of FJWC and FJ72-1 Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH117778 ID=EH117778; Name=EH117778; organism=Citrus sinensis; type=EST; length=274bp
GACGATGAGTCCTGAGTAACAGGCTCGACAGTAGGCTTCTCAGGAGCAAT
GGGCATGTAAGGTCCTTGTACTTGAGTTGCTGTTGCCAATTCCTCAGGGG
CAGAATCACCAGCCTTGAACTTGCGAGCACGTCTTGGGAAAACAACCAAC
TTAGCCTTGTAAGTCTTGAGCCTCTGAACATTAGATTGAAGACCCTCAAG
AGAACGGTTCTTGCGTCGATGATCGACTGAAACACCAATTGTCGGAGCCA
GTTTCTTGTGAATTGGTACGCAGT
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