EH117771

Overview
NameEH117771
Unique NameEH117771
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length239
Libraries
Library NameType
Different expression profile of FJWC and FJ72-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EH117771 vs. ExPASy Swiss-Prot
Match: RS6_BRAFL (40S ribosomal protein S6 OS=Branchiostoma floridae GN=RPS6 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.099e-25
Identity = 53/71 (74.65%), Postives = 64/71 (90.14%), Query Frame = -1
Query:   18 QFKGYVFRVSGGNDKRGFPMKQGVLLPHRVRLLMSKGHSYYRPRRTGERKRKSVRGCIVGSDLAVLSLVVV 230
            ++KGY+ R+SGGNDK+GFPMKQGVL   RVRLL+ KGHS YRPRRTGERKRKSVRGCIV S+L+VL+LV++
Sbjct:   44 EWKGYLVRISGGNDKQGFPMKQGVLTNGRVRLLLGKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLNLVIL 114          
BLAST of EH117771 vs. ExPASy Swiss-Prot
Match: RS6_AEDAL (40S ribosomal protein S6 OS=Aedes albopictus GN=RpS6 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.354e-25
Identity = 52/71 (73.24%), Postives = 63/71 (88.73%), Query Frame = -1
Query:   18 QFKGYVFRVSGGNDKRGFPMKQGVLLPHRVRLLMSKGHSYYRPRRTGERKRKSVRGCIVGSDLAVLSLVVV 230
            ++KGYVF+++GGNDK+GFPMKQGVL   RVRLL+ KGHS YRPRRTGERKRKSVRGCIV  +L+ L+L+VV
Sbjct:   44 EWKGYVFKIAGGNDKQGFPMKQGVLTNTRVRLLLKKGHSCYRPRRTGERKRKSVRGCIVDQNLSALALIVV 114          
BLAST of EH117771 vs. ExPASy Swiss-Prot
Match: RS6_AEDAE (40S ribosomal protein S6 OS=Aedes aegypti GN=RpS6 PE=2 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 5.354e-25
Identity = 52/71 (73.24%), Postives = 63/71 (88.73%), Query Frame = -1
Query:   18 QFKGYVFRVSGGNDKRGFPMKQGVLLPHRVRLLMSKGHSYYRPRRTGERKRKSVRGCIVGSDLAVLSLVVV 230
            ++KGYVF+++GGNDK+GFPMKQGVL   RVRLL+ KGHS YRPRRTGERKRKSVRGCIV  +L+ L+L+VV
Sbjct:   44 EWKGYVFKIAGGNDKQGFPMKQGVLTNTRVRLLLKKGHSCYRPRRTGERKRKSVRGCIVDQNLSALALIVV 114          
BLAST of EH117771 vs. ExPASy Swiss-Prot
Match: RS6_YARLI (40S ribosomal protein S6 OS=Yarrowia lipolytica GN=RPS6 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.193e-24
Identity = 53/73 (72.60%), Postives = 63/73 (86.30%), Query Frame = -1
Query:   12 QFKGYVFRVSGGNDKRGFPMKQGVLLPHRVRLLMSKGHSYYRPRRTGERKRKSVRGCIVGSDLAVLSLVVVTQ 230
            +FKGYV +++GGNDK+GFPMKQGV+ P RVRLL+SK  S YR RR GERKRKSVRGCIV SDL+VLS+V+V Q
Sbjct:   44 EFKGYVLKITGGNDKQGFPMKQGVMHPTRVRLLLSKDSSCYRSRRAGERKRKSVRGCIVSSDLSVLSVVIVKQ 116          
BLAST of EH117771 vs. ExPASy Swiss-Prot
Match: RS6_ONCMY (40S ribosomal protein S6 OS=Oncorhynchus mykiss GN=rps6 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.657e-24
Identity = 51/71 (71.83%), Postives = 64/71 (90.14%), Query Frame = -1
Query:   18 QFKGYVFRVSGGNDKRGFPMKQGVLLPHRVRLLMSKGHSYYRPRRTGERKRKSVRGCIVGSDLAVLSLVVV 230
            ++KGY+ R+SGGNDK+GFPMKQGVL   RVRLL++KGHS YRPRRTGERKRKSVRGCI  ++L+VL+LV++
Sbjct:   44 EWKGYMVRISGGNDKQGFPMKQGVLTHGRVRLLLAKGHSCYRPRRTGERKRKSVRGCIGDANLSVLNLVII 114          
BLAST of EH117771 vs. ExPASy Swiss-Prot
Match: RS6_DROME (40S ribosomal protein S6 OS=Drosophila melanogaster GN=RpS6 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.532e-24
Identity = 51/71 (71.83%), Postives = 63/71 (88.73%), Query Frame = -1
Query:   18 QFKGYVFRVSGGNDKRGFPMKQGVLLPHRVRLLMSKGHSYYRPRRTGERKRKSVRGCIVGSDLAVLSLVVV 230
            ++KGY  R++GGNDK+GFPMKQGVL   RVRLL+ KGHS YRPRRTGERKRKSVRGCIV ++++VL+LVV+
Sbjct:   44 EWKGYQLRIAGGNDKQGFPMKQGVLTHGRVRLLLKKGHSCYRPRRTGERKRKSVRGCIVDANMSVLALVVL 114          
BLAST of EH117771 vs. ExPASy Swiss-Prot
Match: RS6_CAEEL (40S ribosomal protein S6 OS=Caenorhabditis elegans GN=rps-6 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.450e-22
Identity = 47/71 (66.20%), Postives = 59/71 (83.10%), Query Frame = -1
Query:   18 QFKGYVFRVSGGNDKRGFPMKQGVLLPHRVRLLMSKGHSYYRPRRTGERKRKSVRGCIVGSDLAVLSLVVV 230
            ++KGYV R+ GGNDK+GFPMKQG+L   RVRLL+ KG S YR R+ GERKRKSVRGCIV ++++ LSLV+V
Sbjct:   44 EWKGYVVRIGGGNDKQGFPMKQGILTNGRVRLLLKKGQSCYRERKNGERKRKSVRGCIVDANMSALSLVIV 114          
BLAST of EH117771 vs. ExPASy Swiss-Prot
Match: RS62_ARATH (40S ribosomal protein S6-2 OS=Arabidopsis thaliana GN=RPS6B PE=1 SV=3)

HSP 1 Score: 99.3673 bits (246), Expect = 6.125e-21
Identity = 50/78 (64.10%), Postives = 62/78 (79.49%), Query Frame = -1
Query:    3 QFKGYVFRVSGGNDKRGFPMKQGVLLPHRVRLLMSKGHSYYR--PRRTGERKRKSVRGCIVGSDLAVLSLVVVTQDSS 230
            +FKGYVF++ GG DK+GFPMKQGVL P RVRLL+ +G   +R   RRTGER+RKSVRGCIV  DL+VL+LV+V +  S
Sbjct:   44 EFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGVS 121          
BLAST of EH117771 vs. ExPASy Swiss-Prot
Match: RS61_ARATH (40S ribosomal protein S6-1 OS=Arabidopsis thaliana GN=RPS6A PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 6.125e-21
Identity = 49/73 (67.12%), Postives = 60/73 (82.19%), Query Frame = -1
Query:   18 QFKGYVFRVSGGNDKRGFPMKQGVLLPHRVRLLMSKGHSYYR--PRRTGERKRKSVRGCIVGSDLAVLSLVVV 230
            +FKGYVF++ GG DK+GFPMKQGVL P RVRLL+ +G   +R   RRTGER+RKSVRGCIV  DL+VL+LV+V
Sbjct:   44 EFKGYVFKIKGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIV 116          
BLAST of EH117771 vs. ExPASy Swiss-Prot
Match: RS6_ASPOF (40S ribosomal protein S6 OS=Asparagus officinalis GN=rps6 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.040e-20
Identity = 48/73 (65.75%), Postives = 59/73 (80.82%), Query Frame = -1
Query:   18 QFKGYVFRVSGGNDKRGFPMKQGVLLPHRVRLLMSKGHSYYR--PRRTGERKRKSVRGCIVGSDLAVLSLVVV 230
            +FKGYVF++ GG DK+GFPMKQGVL P RVRLL+ +G   +R   RR GER+RKSVRGCIV  DL+VL+LV+V
Sbjct:   44 EFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIV 116          
The following BLAST results are available for this feature:
BLAST of EH117771 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
RS6_BRAFL4.099e-2574.6540S ribosomal protein S6 OS=Branchiostoma floridae... [more]
RS6_AEDAL5.354e-2573.2440S ribosomal protein S6 OS=Aedes albopictus GN=Rp... [more]
RS6_AEDAE5.354e-2573.2440S ribosomal protein S6 OS=Aedes aegypti GN=RpS6 ... [more]
RS6_YARLI1.193e-2472.6040S ribosomal protein S6 OS=Yarrowia lipolytica GN... [more]
RS6_ONCMY2.657e-2471.8340S ribosomal protein S6 OS=Oncorhynchus mykiss GN... [more]
RS6_DROME4.532e-2471.8340S ribosomal protein S6 OS=Drosophila melanogaste... [more]
RS6_CAEEL9.450e-2266.2040S ribosomal protein S6 OS=Caenorhabditis elegans... [more]
RS62_ARATH6.125e-2164.1040S ribosomal protein S6-2 OS=Arabidopsis thaliana... [more]
RS61_ARATH6.125e-2167.1240S ribosomal protein S6-1 OS=Arabidopsis thaliana... [more]
RS6_ASPOF3.040e-2065.7540S ribosomal protein S6 OS=Asparagus officinalis ... [more]

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Properties
Property NameValue
Genbank descriptionfjfw4 Different expression profile of FJWC and FJ72-1 Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH117771 ID=EH117771; Name=EH117771; organism=Citrus sinensis; type=EST; length=239bp
GACGATGAGTCCTGAGTAACTACAACGAGAGACAAGACAGCGAGGTCAGA
ACCAACGATACAACCACGAACGGACTTCCTCTTACGTTCACCAGTACGGC
GAGGACGATAATAAGAGTGACCCTTGGACATCAAGAGACGAACACGGTGA
GGTAAGAGAACACCTTGCTTCATGGGGAAACCTCGCTTATCGTTACCACC
AGAGACACGGAAAACGTAACCCTTGAATTGGTACGCAGT
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