EH117771

Overview
NameEH117771
Unique NameEH117771
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length239
Libraries
Library NameType
Different expression profile of FJWC and FJ72-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EH117771 vs. ExPASy Swiss-Prot
Match: RS6_TOBAC (40S ribosomal protein S6 (Fragment) OS=Nicotiana tabacum GN=RPS6 PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 3.361e-19
Identity = 47/71 (66.20%), Postives = 57/71 (80.28%), Query Frame = -1
Query:   18 KGYVFRVSGGNDKRGFPMKQGVLLPHRVRLLMSKGHSYYR--PRRTGERKRKSVRGCIVGSDLAVLSLVVV 224
            KGYVF++ GG DK+GFPMKQGVL P RVRLL+ +G   +R   RR GER+RKSVRGCIV  DL+VL+LV+V
Sbjct:    1 KGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLYRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIV 71          
BLAST of EH117771 vs. ExPASy Swiss-Prot
Match: RS6_DICDI (40S ribosomal protein S6 OS=Dictyostelium discoideum GN=rps6 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.390e-19
Identity = 43/71 (60.56%), Postives = 53/71 (74.65%), Query Frame = -1
Query:   18 QFKGYVFRVSGGNDKRGFPMKQGVLLPHRVRLLMSKGHSYYRPRRTGERKRKSVRGCIVGSDLAVLSLVVV 230
            +FKGYVF+++GGND  GFPM QGV  P RVRLL+      ++P R GERKRKSVRGCIV  D+A L L++V
Sbjct:   44 EFKGYVFKITGGNDTEGFPMMQGVGAPTRVRLLLDGRSGCFKPSRDGERKRKSVRGCIVAEDIASLQLIIV 114          
BLAST of EH117771 vs. ExPASy Swiss-Prot
Match: RS6_LEIMA (40S ribosomal protein S6 OS=Leishmania major GN=RPS6 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.616e-13
Identity = 35/72 (48.61%), Postives = 52/72 (72.22%), Query Frame = -1
Query:   21 QFKGYVFRVSGGNDKRGFPMKQGVLLPHRVRLLMSKGHSYYRPRR--TGERKRKSVRGCIVGSDLAVLSLVV 230
            +FKGY+FR+ GG+DK GFPM  GVL   RV LL+ +G   +   R   GER+RK+VRGC++ SD+A++++ +
Sbjct:   45 EFKGYIFRLRGGSDKDGFPMVPGVLASSRVSLLVKRGAIGFNTFRGYQGERRRKNVRGCVLASDIALVNVTI 116          
BLAST of EH117771 vs. ExPASy Swiss-Prot
Match: RS6_LEIIN (40S ribosomal protein S6 OS=Leishmania infantum GN=RPS6 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.616e-13
Identity = 35/72 (48.61%), Postives = 52/72 (72.22%), Query Frame = -1
Query:   21 QFKGYVFRVSGGNDKRGFPMKQGVLLPHRVRLLMSKGHSYYRPRR--TGERKRKSVRGCIVGSDLAVLSLVV 230
            +FKGY+FR+ GG+DK GFPM  GVL   RV LL+ +G   +   R   GER+RK+VRGC++ SD+A++++ +
Sbjct:   45 EFKGYIFRLRGGSDKDGFPMVPGVLASSRVSLLVKRGAIGFNTFRGYQGERRRKNVRGCVLASDIALVNVTI 116          
BLAST of EH117771 vs. ExPASy Swiss-Prot
Match: RS6_ENCCU (40S ribosomal protein S6 OS=Encephalitozoon cuniculi GN=RPS6 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.616e-13
Identity = 35/71 (49.30%), Postives = 51/71 (71.83%), Query Frame = -1
Query:   18 QFKGYVFRVSGGNDKRGFPMKQGVLLPHRVRLLMSKGHSYYRPRRTGERKRKSVRGCIVGSDLAVLSLVVV 230
            +F+G +  ++GG+D +GFPM  G L   RVR L+SKG + YR RR G R+RKSVRG IV  ++ VL+L+++
Sbjct:   29 EFEGTIMEITGGDDYQGFPMVSGHLTKKRVRPLLSKGDAGYRCRRKGVRRRKSVRGSIVSEEICVLNLIIL 99          
BLAST of EH117771 vs. ExPASy Swiss-Prot
Match: RS6E_METKA (30S ribosomal protein S6e OS=Methanopyrus kandleri GN=rps6e PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.802e-11
Identity = 32/68 (47.06%), Postives = 46/68 (67.65%), Query Frame = -1
Query:   18 GYVFRVSGGNDKRGFPMKQGVLLPHRVRLLMSKGHSYYRPRRTGERKRKSVRGCIVGSDLAVLSLVVV 221
            GY  +++GG DK GFPM+  +  P RVRLL+S G   +RP R GER+RK+VRG  +  D+  ++ V+V
Sbjct:   47 GYKLKITGGTDKDGFPMRPDIHGPVRVRLLLS-GPPGFRPERKGERRRKTVRGNTISEDIVQVNTVIV 113          
The following BLAST results are available for this feature:
BLAST of EH117771 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
RS6_TOBAC3.361e-1966.2040S ribosomal protein S6 (Fragment) OS=Nicotiana t... [more]
RS6_DICDI4.390e-1960.5640S ribosomal protein S6 OS=Dictyostelium discoide... [more]
RS6_LEIMA1.616e-1348.6140S ribosomal protein S6 OS=Leishmania major GN=RP... [more]
RS6_LEIIN1.616e-1348.6140S ribosomal protein S6 OS=Leishmania infantum GN... [more]
RS6_ENCCU1.616e-1349.3040S ribosomal protein S6 OS=Encephalitozoon cunicu... [more]
RS6E_METKA9.802e-1147.0630S ribosomal protein S6e OS=Methanopyrus kandleri... [more]

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Properties
Property NameValue
Genbank descriptionfjfw4 Different expression profile of FJWC and FJ72-1 Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH117771 ID=EH117771; Name=EH117771; organism=Citrus sinensis; type=EST; length=239bp
GACGATGAGTCCTGAGTAACTACAACGAGAGACAAGACAGCGAGGTCAGA
ACCAACGATACAACCACGAACGGACTTCCTCTTACGTTCACCAGTACGGC
GAGGACGATAATAAGAGTGACCCTTGGACATCAAGAGACGAACACGGTGA
GGTAAGAGAACACCTTGCTTCATGGGGAAACCTCGCTTATCGTTACCACC
AGAGACACGGAAAACGTAACCCTTGAATTGGTACGCAGT
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