CX671816

Overview
NameCX671816
Unique NameCX671816
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length768
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX671816_ssr295 microsatellite CX671816_ssr295:295..304. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9888 contig Csv1_Contig9888:56..823. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX671816 vs. ExPASy Swiss-Prot
Match: CRYD_OSTTA (Cryptochrome DASH, chloroplastic/mitochondrial OS=Ostreococcus tauri GN=Ot01g06320 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.085e-13
Identity = 44/119 (36.97%), Postives = 62/119 (52.10%), Query Frame = 3 
Query:  429 RRASIVWFRNDLRVHDNESLNTA-----NNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGAD--AVYAHREVSHDEVK 764
            R   ++WFRNDLR+ DN  +  A      +  V V+PVY FD   +  S  G  + G  R  F +E V DL+ +L+A GSDL+VR GK   V+ EL      D   +    EV+ +E +
Sbjct:    3 RTRVVIWFRNDLRLLDNACVARAATLASESSDVEVVPVYVFDETYFKPSKRGLARFGAGRGKFTLECVGDLKTSLRALGSDLLVRCGKSRDVIAELTLTGANDRTIILTQTEVTSEETE 121
The following BLAST results are available for this feature:
BLAST of CX671816 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
CRYD_OSTTA8.085e-1336.97Cryptochrome DASH, chloroplastic/mitochondrial OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_13C10_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13C10-E19-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671816 ID=CX671816; Name=CX671816; organism=Citrus sinensis; type=EST; length=768bp
GCAGCTTATCTCCATCCAGTTCAGCTGCAACACAATTTTCATCTTCCATC
TTCAGGGTTGAAATGGATCCCAATAAGCAAAATCTTGAAAACCCAGAAAA
CCATTCCAATGAGGAACAAAACCCACTTGCGACTATCCCTTCTCAATCAC
CATTTGCCACTCTTTCCCTCTCATTTTCTCTCCCCCAAGTCCTCCCAGCC
AACACTTTCTTCATTCAACCCAAAATTTCCACCTTATTTTCCCACCAACC
AAACAAGGTCAAAGCCCCCACACAAGCCTCTACGCTTACCCACATCTCTC
TCTCCGCCTCCTCCACTCTCTCTCCTTCCAAAATTTCATTCAAGTCCACA
CTCTCCGCAAACCCTCTTCAGAGCCCTCTCTCTTTAGGGCCCCACCGCCC
CTTGGACCCGAACAATGGGGCCGCAATTCGTCGAGCTTCCATTGTTTGGT
TCCGCAACGACTTGCGGGTCCATGATAACGAATCTCTCAACACCGCCAAT
AACGAGAGCGTCTCTGTTTTGCCTGTTTATTGTTTCGACCCGAGGGATTA
CGGCAAATCCTCTTCTGGCTTTGACAAAACGGGGCCGTATCGGGCATCGT
TTTTGATTGAGTCAGTTTCTGACCTTCGCAAGAACTTGCAGGCACGTGGG
TCTGATCTCGTGGTGAGAGTGGGAAAGCCGGAGACTGTTCTGGTCGAGTT
GGCTAAAGCCATTGGAGCTGATGCAGTGTACGCGCACAGAGAGGTGTCAC
ATGATGAGGTTAAATCGG
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