CX671688

Overview
NameCX671688
Unique NameCX671688
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_PAUKA (Superoxide dismutase [Cu-Zn] OS=Paulownia kawakamii GN=SODCC PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.239e-43
Identity = 78/122 (63.93%), Postives = 94/122 (77.05%), Query Frame = 1
Query:   88 LISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            ++S +  V G+++F Q  +G T V G ++GLKPG HGFH+HALGDTTNGC STGPHFNP  K+HGAP D  RH GDLGN+  G DG A  +I D+ IPL+G HSI+GRAVVVHADPDDLGKG
Sbjct:    7 VLSSSEGVSGTIYFTQEGDGPTTVTGNVSGLKPGPHGFHVHALGDTTNGCLSTGPHFNPAGKEHGAPDDEVRHAGDLGNVTVGEDGTAAFTIVDKQIPLTGPHSIIGRAVVVHADPDDLGKG 128          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_IPOBA (Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas GN=SODCC PE=2 SV=2)

HSP 1 Score: 174.096 bits (440), Expect = 6.514e-43
Identity = 77/122 (63.11%), Postives = 94/122 (77.05%), Query Frame = 1
Query:   88 LISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            ++S +  V G++ F Q  +G T V G ++GLKPGLHGFH+HALGDTTNGC STGPHFNP  K+HGAP D+ RH GDLGNI  G DG A  +I D+ IPL+G +S++GRAVVVH DPDDLGKG
Sbjct:    7 VLSSSEGVSGTIFFSQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPGDDNRHAGDLGNITVGEDGTASFTITDKQIPLTGANSVIGRAVVVHGDPDDLGKG 128          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC1_BRAJU (Superoxide dismutase [Cu-Zn] 1 OS=Brassica juncea GN=SODCC1 PE=2 SV=3)

HSP 1 Score: 172.94 bits (437), Expect = 1.451e-42
Identity = 79/122 (64.75%), Postives = 92/122 (75.41%), Query Frame = 1
Query:   88 LISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            +++ +  VKG++ F Q  NG T V G ++GLKPGLHGFH+HALGDTTNGC STGPHFNP  K HGAP D  RH GDLGNI  G DG A  +I D  IPL G +SI+GRAVVVHA+PDDLGKG
Sbjct:    7 VLNSSEGVKGTIFFTQEGNGTTTVTGTVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPEGKTHGAPEDANRHAGDLGNITVGDDGTATFTITDSQIPLDGPNSIVGRAVVVHAEPDDLGKG 128          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_PEA (Superoxide dismutase [Cu-Zn] OS=Pisum sativum GN=SODCC PE=2 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 2.475e-42
Identity = 80/122 (65.57%), Postives = 92/122 (75.41%), Query Frame = 1
Query:   88 LISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            ++S +  V G+++F Q  NG T V G + GLKPGLHGFHIHALGDTTNGC STGPHFNP  K+HGAP D  RH GDLGNI  G DG    +I D  IPL+G +SI+GRAVVVHADPDDLGKG
Sbjct:    7 VLSNSNEVSGTINFSQEGNGPTTVTGTLAGLKPGLHGFHIHALGDTTNGCISTGPHFNPNGKEHGAPEDETRHAGDLGNINVGDDGTVSFTITDNHIPLTGTNSIIGRAVVVHADPDDLGKG 128          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_NICPL (Superoxide dismutase [Cu-Zn] OS=Nicotiana plumbaginifolia GN=SODCC PE=2 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 4.222e-42
Identity = 76/122 (62.30%), Postives = 92/122 (75.41%), Query Frame = 1
Query:   88 LISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            ++S +  V G++ F Q  +  T V G ++GLKPGLHGFH+HALGDTTNGC STGPH+NP  K+HGAP D  RH GDLGNI  G DG A  ++ D+ IPL+G  SI+GRAVVVHADPDDLGKG
Sbjct:    7 VLSSSEGVSGTIFFTQDGDAPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPAGKEHGAPEDEVRHAGDLGNITVGEDGTASFTLTDKQIPLAGPQSIIGRAVVVHADPDDLGKG 128          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_BRAOC (Superoxide dismutase [Cu-Zn] OS=Brassica oleracea var. capitata GN=SODCC PE=1 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 4.222e-42
Identity = 77/122 (63.11%), Postives = 92/122 (75.41%), Query Frame = 1
Query:   88 LISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            +++ +  VKG++ F    NG T V G ++GL+PGLHGFH+HALGD TNGC STGPHFNP  K HGAP D  RH GDLGNI+ G DG A  +I D  IPLSG +SI+GRA+VVHADPDDLGKG
Sbjct:    7 VLNSSEGVKGTIFFTHEGNGATTVTGTVSGLRPGLHGFHVHALGDNTNGCMSTGPHFNPDGKTHGAPEDANRHAGDLGNIIVGDDGTATFTITDSQIPLSGPNSIVGRAIVVHADPDDLGKG 128          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_ARATH (Superoxide dismutase [Cu-Zn] OS=Arabidopsis thaliana GN=SODCC PE=1 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 4.222e-42
Identity = 79/122 (64.75%), Postives = 93/122 (76.23%), Query Frame = 1
Query:   88 LISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            +++ +  V G++ F Q  +GVT V G ++GLKPGLHGFH+HALGDTTNGC STGPHFNP  K HGAP D  RH GDLGNI  G DG A  +I D  IPL+G +SI+GRAVVVHADPDDLGKG
Sbjct:    7 VLNSSEGVTGTIFFTQEGDGVTTVSGTVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPDGKTHGAPEDANRHAGDLGNITVGDDGTATFTITDCQIPLTGPNSIVGRAVVVHADPDDLGKG 128          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC1_MESCR (Superoxide dismutase [Cu-Zn] 1 OS=Mesembryanthemum crystallinum GN=SODCC.1 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.222e-42
Identity = 77/122 (63.11%), Postives = 93/122 (76.23%), Query Frame = 1
Query:   88 LISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            ++S +  V G++ F Q  +G T V G ++GL+PGLHGFH+HALGDTTNGC STGPHFNP  K+HGAP D  RH GDLGNI  G DG A  +I D  IPL+G +SI+GRAVVVHADPDDLG+G
Sbjct:    7 VLSSSEGVSGTVQFTQEGSGPTTVTGNVSGLRPGLHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDETRHAGDLGNITVGDDGTATFTIIDSQIPLTGPNSIVGRAVVVHADPDDLGRG 128          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_SPIOL (Superoxide dismutase [Cu-Zn] OS=Spinacia oleracea GN=SODCC PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 5.515e-42
Identity = 77/122 (63.11%), Postives = 95/122 (77.87%), Query Frame = 1
Query:   88 LISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            ++S +  V G+++F Q  +G T V G ++GLKPGLHGFH+HALGDTTNGC STGPH+NP  K+HGAP D+ RH GDLGNI  G DG A  +I D  IPLSG +SI+GRAVVVHA+PDDLG+G
Sbjct:    7 VLSSSEGVSGTVYFAQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPNGKEHGAPEDDVRHAGDLGNITVGDDGTATFTIIDSQIPLSGPNSIVGRAVVVHAEPDDLGRG 128          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_CARPA (Superoxide dismutase [Cu-Zn] OS=Carica papaya GN=SODCC PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 9.407e-42
Identity = 78/122 (63.93%), Postives = 93/122 (76.23%), Query Frame = 1
Query:   88 LISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            ++S +  V G++ F Q  +G T V G+I+GLKPG HGFH+HALGDTTNGC STGPHFNP  K+HGAP D+ RH GDLGN+  G DG    SI D  IPL+G +SI+GRAVVVHADPDDLGKG
Sbjct:    7 VLSSSEGVSGTIFFTQAADGPTTVTGEISGLKPGHHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDIRHAGDLGNVNVGDDGKVSFSIIDSQIPLTGPNSIVGRAVVVHADPDDLGKG 128          
The following BLAST results are available for this feature:
BLAST of CX671688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
SODC_PAUKA2.239e-4363.93Superoxide dismutase [Cu-Zn] OS=Paulownia kawakami... [more]
SODC_IPOBA6.514e-4363.11Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas GN... [more]
SODC1_BRAJU1.451e-4264.75Superoxide dismutase [Cu-Zn] 1 OS=Brassica juncea ... [more]
SODC_PEA2.475e-4265.57Superoxide dismutase [Cu-Zn] OS=Pisum sativum GN=S... [more]
SODC_NICPL4.222e-4262.30Superoxide dismutase [Cu-Zn] OS=Nicotiana plumbagi... [more]
SODC_BRAOC4.222e-4263.11Superoxide dismutase [Cu-Zn] OS=Brassica oleracea ... [more]
SODC_ARATH4.222e-4264.75Superoxide dismutase [Cu-Zn] OS=Arabidopsis thalia... [more]
SODC1_MESCR4.222e-4263.11Superoxide dismutase [Cu-Zn] 1 OS=Mesembryanthemum... [more]
SODC_SPIOL5.515e-4263.11Superoxide dismutase [Cu-Zn] OS=Spinacia oleracea ... [more]
SODC_CARPA9.407e-4263.93Superoxide dismutase [Cu-Zn] OS=Carica papaya GN=S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_12E09_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12E09-J18-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671688 ID=CX671688; Name=CX671688; organism=Citrus sinensis; type=EST; length=705bp
ATTTGATATCGAGAAGACCCAGATAGAGAAAGCAAGAGATAAAAAATGGA
AACAGGGGCTACAAAAGCCACAGTGAAAGCCGTGGCTCTCATTTCTGGTG
CTACCAGCGTTAAAGGCTCTCTTCACTTTGTTCAAGGACCCAACGGAGTT
ACACATGTGAAAGGGAAGATTACAGGACTGAAGCCAGGCCTTCATGGCTT
CCATATTCACGCCCTCGGTGACACCACTAATGGTTGCAATTCTACTGGAC
CTCATTTCAATCCATTGAAGAAGGATCATGGGGCTCCCAGTGATAACGAG
CGGCACACTGGTGATTTGGGAAACATTGTTGCAGGCCCTGATGGAGTTGC
TGAGGTTTCAATTGCTGACAGGATGATTCCTCTGAGCGGGCAACACTCAA
TATTGGGGAGGGCTGTTGTTGTGCACGCTGATCCTGATGATCTTGGAAAA
GGCAAGTTTAGTAGTTTGTCCTTAATTTTGATTACAAATCTTTTTTATTA
CAAGGATACAGCTTATTGGTACAAATGTACACAAAAGTATGTTTATTTTA
AACTGTCAGTTCTTTTGGAGAATAATATGTCAGGTTGAAGCTTTAGGTAA
GGATGTACAATTTTTTTTTCTTCCTCTTAGTTTCAGGTACATTGGATTCT
TTACAACTACTTTGAAGAGTTTAGTTTTAAATGTAAGAAATTCAGTGTAG
TTTGT
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