CX671688

Overview
NameCX671688
Unique NameCX671688
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC2_SOLLC (Superoxide dismutase [Cu-Zn] 2 OS=Solanum lycopersicum GN=SODCC.5 PE=3 SV=3)

HSP 1 Score: 169.859 bits (429), Expect = 1.229e-41
Identity = 77/122 (63.11%), Postives = 91/122 (74.59%), Query Frame = 1
Query:   88 LISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            +++ +  V G++ F Q     T V G I+GLKPGLHGFH+HALGDTTNGC STGPH+NP  K+HGAP D  RH GDLGNI  G DG A  +I D+ IPL+G  SI+GRAVVVHADPDDLGKG
Sbjct:    7 VLNSSEGVSGTILFTQDGAAPTTVNGNISGLKPGLHGFHVHALGDTTNGCMSTGPHYNPAGKEHGAPEDEVRHAGDLGNITVGEDGTASFTITDKQIPLTGPQSIIGRAVVVHADPDDLGKG 128          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_ZANAE (Superoxide dismutase [Cu-Zn] OS=Zantedeschia aethiopica GN=SODCC PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.737e-41
Identity = 73/122 (59.84%), Postives = 92/122 (75.41%), Query Frame = 1
Query:   88 LISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            +++G+  V+G++ F Q   G T + G ++GLKPGLHGFH+HALGDTTNGC STGPHFNP  K+HGAP D  RH GDLGN+  G DG    ++ D  IPL+G +S++GRAVVVHAD DDLGKG
Sbjct:    7 VLTGSEGVQGTVFFAQEGEGPTTITGSLSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDGNRHAGDLGNVTVGEDGTVNFTVTDSQIPLTGLNSVVGRAVVVHADSDDLGKG 128          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_CAPAN (Superoxide dismutase [Cu-Zn] OS=Capsicum annuum GN=SODCC PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.737e-41
Identity = 76/122 (62.30%), Postives = 90/122 (73.77%), Query Frame = 1
Query:   88 LISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            ++S +  V G++ F Q  +  T V G ++GLKPGLHGFH+HALGDTTNGC STGPH+NP  K+HGAP D  RH GDLGNI  G DG A  +I D  IPL+G  SI+GR VVVHADPDDLGKG
Sbjct:    7 VLSSSECVSGTILFSQDGDAPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPAGKEHGAPEDENRHAGDLGNITVGEDGTASFTITDEQIPLTGPQSIIGRGVVVHADPDDLGKG 128          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC1_SOLLC (Superoxide dismutase [Cu-Zn] 1 OS=Solanum lycopersicum GN=SODCC.1 PE=2 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 6.097e-41
Identity = 77/122 (63.11%), Postives = 90/122 (73.77%), Query Frame = 1
Query:   88 LISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            +++ +  V G+  F Q     T V G I+GLKPGLHGFH+HALGDTTNGC STGPH+NP  K+HGAP D  RH GDLGNI  G DG A  +I D+ IPL+G  SI+GRAVVVHADPDDLGKG
Sbjct:    7 VLNSSEGVSGTYLFTQVGVAPTTVNGNISGLKPGLHGFHVHALGDTTNGCMSTGPHYNPAGKEHGAPEDEVRHAGDLGNITVGEDGTASFTITDKQIPLTGPQSIIGRAVVVHADPDDLGKG 128          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_SOLCS (Superoxide dismutase [Cu-Zn] OS=Solidago canadensis var. scabra GN=SODCC PE=2 SV=3)

HSP 1 Score: 166.392 bits (420), Expect = 1.358e-40
Identity = 77/123 (62.60%), Postives = 91/123 (73.98%), Query Frame = 1
Query:   88 LISGATSVKGSLHFVQGPNGV-THVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            ++S +  V G++ F Q   G  T V G ++GLKPG HGFH+HALGDTTNGC STGPH+NP  KDHGAP D  RH GDLGN+  G DG A+ +I D+ IPL G  SI+GRAVVVHADPDDLGKG
Sbjct:    7 VLSSSEGVSGTIFFSQEAEGAPTTVTGDLSGLKPGPHGFHVHALGDTTNGCMSTGPHYNPHGKDHGAPDDEHRHAGDLGNVTVGEDGTAKFTIVDKQIPLIGAQSIIGRAVVVHADPDDLGKG 129          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC2_BRAJU (Superoxide dismutase [Cu-Zn] 2 OS=Brassica juncea GN=SODCC2 PE=2 SV=3)

HSP 1 Score: 166.007 bits (419), Expect = 1.774e-40
Identity = 78/122 (63.93%), Postives = 91/122 (74.59%), Query Frame = 1
Query:   88 LISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            +++ +  VKG++ F Q   G T V G ++GLKPGLHGFH+HALGDTTNG  STGPHFNP  K HGAP D  RH GDLGNI+ G DG A  +I D  IPLSG +SI+GRAVVVHADPD LGKG
Sbjct:    7 VLNSSEGVKGTIFFAQEGEGKTTVTGTVSGLKPGLHGFHVHALGDTTNGSMSTGPHFNPDGKQHGAPEDANRHAGDLGNIIVGDDGTATFTITDCQIPLSGPNSIVGRAVVVHADPDVLGKG 128          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_SOYBN (Superoxide dismutase [Cu-Zn] OS=Glycine max GN=SOD1 PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 6.741e-40
Identity = 75/122 (61.48%), Postives = 87/122 (71.31%), Query Frame = 1
Query:   88 LISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            ++  +  V G++ F Q  NG T V G + GLKPGLHGFH+HALGDTTNGC STG HFNP   +HGAP D  RH GDLGN+  G DG    SI D  IPL+G +SI+GRAVVVHAD DDLGKG
Sbjct:    7 VLGSSEGVTGTIFFTQEGNGPTTVTGSLAGLKPGLHGFHVHALGDTTNGCLSTGAHFNPNNNEHGAPEDENRHAGDLGNVNVGDDGTVSFSITDSQIPLTGPNSIIGRAVVVHADSDDLGKG 128          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_CAVPO (Superoxide dismutase [Cu-Zn] OS=Cavia porcellus GN=SOD1 PE=1 SV=3)

HSP 1 Score: 162.925 bits (411), Expect = 1.502e-39
Identity = 75/122 (61.48%), Postives = 86/122 (70.49%), Query Frame = 1
Query:   88 LISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            ++ G   V+G +HF Q  NG   VKG+ITGL  G HGFH+H  GD T GC S GPHFNPL K HG P D ERH GDLGN+ AG DGVA VSI D +I LSG +SI+GR +VVH  PDDLGKG
Sbjct:    8 VLKGDGPVQGIIHFEQKANGPVVVKGRITGLVEGKHGFHVHEFGDNTQGCTSAGPHFNPLSKKHGGPQDEERHVGDLGNVTAGADGVANVSIEDSLISLSGANSIIGRTMVVHEKPDDLGKG 129          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODCP_SPIOL (Superoxide dismutase [Cu-Zn], chloroplastic OS=Spinacia oleracea GN=SODCP PE=1 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 1.076e-37
Identity = 73/122 (59.84%), Postives = 89/122 (72.95%), Query Frame = 1
Query:   88 LISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            ++ G ++V+G +   Q  +G T V  +I+GL PG HGFH+H  GDTTNGC STGPHFNP KK HGAP D  RH GDLGNIVA  DGVAE +I D  IPL+G +S++GRA+VVH   DDLGKG
Sbjct:   76 VLKGTSNVEGVVTLTQEDDGPTTVNVRISGLAPGKHGFHLHEFGDTTNGCMSTGPHFNPDKKTHGAPEDEVRHAGDLGNIVANTDGVAEATIVDNQIPLTGPNSVVGRALVVHELEDDLGKG 197          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_HALRO (Superoxide dismutase [Cu-Zn] OS=Halocynthia roretzi PE=1 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 1.406e-37
Identity = 75/116 (64.66%), Postives = 87/116 (75.00%), Query Frame = 1
Query:  106 SVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            SVKG+L+F Q   G   V G+++GL PG HGFHIH  GD TNGC S+G HFNP K+ HGAP D+ RH GDLGNI A   GVA V+I DRMI L+G+HSI+GRAVVVHA  DDLGKG
Sbjct:   12 SVKGTLNFKQDAIGSCTVTGEVSGLIPGKHGFHIHEYGDLTNGCTSSGGHFNPFKQIHGAPEDDIRHVGDLGNITADSSGVATVNITDRMISLTGEHSIIGRAVVVHAGEDDLGKG 127          
The following BLAST results are available for this feature:
BLAST of CX671688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
SODC2_SOLLC1.229e-4163.11Superoxide dismutase [Cu-Zn] 2 OS=Solanum lycopers... [more]
SODC_ZANAE2.737e-4159.84Superoxide dismutase [Cu-Zn] OS=Zantedeschia aethi... [more]
SODC_CAPAN2.737e-4162.30Superoxide dismutase [Cu-Zn] OS=Capsicum annuum GN... [more]
SODC1_SOLLC6.097e-4163.11Superoxide dismutase [Cu-Zn] 1 OS=Solanum lycopers... [more]
SODC_SOLCS1.358e-4062.60Superoxide dismutase [Cu-Zn] OS=Solidago canadensi... [more]
SODC2_BRAJU1.774e-4063.93Superoxide dismutase [Cu-Zn] 2 OS=Brassica juncea ... [more]
SODC_SOYBN6.741e-4061.48Superoxide dismutase [Cu-Zn] OS=Glycine max GN=SOD... [more]
SODC_CAVPO1.502e-3961.48Superoxide dismutase [Cu-Zn] OS=Cavia porcellus GN... [more]
SODCP_SPIOL1.076e-3759.84Superoxide dismutase [Cu-Zn], chloroplastic OS=Spi... [more]
SODC_HALRO1.406e-3764.66Superoxide dismutase [Cu-Zn] OS=Halocynthia roretz... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_12E09_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12E09-J18-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671688 ID=CX671688; Name=CX671688; organism=Citrus sinensis; type=EST; length=705bp
ATTTGATATCGAGAAGACCCAGATAGAGAAAGCAAGAGATAAAAAATGGA
AACAGGGGCTACAAAAGCCACAGTGAAAGCCGTGGCTCTCATTTCTGGTG
CTACCAGCGTTAAAGGCTCTCTTCACTTTGTTCAAGGACCCAACGGAGTT
ACACATGTGAAAGGGAAGATTACAGGACTGAAGCCAGGCCTTCATGGCTT
CCATATTCACGCCCTCGGTGACACCACTAATGGTTGCAATTCTACTGGAC
CTCATTTCAATCCATTGAAGAAGGATCATGGGGCTCCCAGTGATAACGAG
CGGCACACTGGTGATTTGGGAAACATTGTTGCAGGCCCTGATGGAGTTGC
TGAGGTTTCAATTGCTGACAGGATGATTCCTCTGAGCGGGCAACACTCAA
TATTGGGGAGGGCTGTTGTTGTGCACGCTGATCCTGATGATCTTGGAAAA
GGCAAGTTTAGTAGTTTGTCCTTAATTTTGATTACAAATCTTTTTTATTA
CAAGGATACAGCTTATTGGTACAAATGTACACAAAAGTATGTTTATTTTA
AACTGTCAGTTCTTTTGGAGAATAATATGTCAGGTTGAAGCTTTAGGTAA
GGATGTACAATTTTTTTTTCTTCCTCTTAGTTTCAGGTACATTGGATTCT
TTACAACTACTTTGAAGAGTTTAGTTTTAAATGTAAGAAATTCAGTGTAG
TTTGT
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