CX671688

Overview
NameCX671688
Unique NameCX671688
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODE_BRUPA (Extracellular superoxide dismutase [Cu-Zn] OS=Brugia pahangi PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.836e-37
Identity = 70/116 (60.34%), Postives = 86/116 (74.14%), Query Frame = 1
Query:  106 SVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            ++ G++HF Q  N  T + G+I GL PGLHGFH+H  GDTTNGC S GPHFNP  K HG P+D  RH GDLGNIVAG DG A + I+D+ + L G +SI+GR++VVHAD DDLGKG
Sbjct:   58 NINGTIHFQQDKNSTT-ISGEIKGLTPGLHGFHVHQYGDTTNGCISAGPHFNPYNKTHGDPTDEMRHVGDLGNIVAGADGTAHIDISDKHVQLLGPNSIIGRSLVVHADQDDLGKG 172          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODCP_PEA (Superoxide dismutase [Cu-Zn], chloroplastic OS=Pisum sativum GN=SODCP PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.398e-37
Identity = 73/122 (59.84%), Postives = 88/122 (72.13%), Query Frame = 1
Query:   88 LISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            ++ G ++V+G +   Q   G T V  +ITGL PGLHGFH+H  GDTTNGC STGPHFNP K  HGAP D  RH GDLGNIVA  +GVAE +I D  IPL+G +S++GRA+VVH   DDLGKG
Sbjct:   56 VLKGTSAVEGVVTLTQDDEGPTTVNVRITGLTPGLHGFHLHEYGDTTNGCISTGPHFNPNKLTHGAPEDEIRHAGDLGNIVANAEGVAEATIVDNQIPLTGPNSVVGRALVVHELQDDLGKG 177          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_MOUSE (Superoxide dismutase [Cu-Zn] OS=Mus musculus GN=Sod1 PE=1 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 3.131e-37
Identity = 73/123 (59.35%), Postives = 87/123 (70.73%), Query Frame = 1
Query:   88 LISGATSVKGSLHFVQGPNGVTHV-KGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            ++ G   V+G++HF Q  +G   V  G+ITGL  G HGFH+H  GD T GC S GPHFNP  K HG P+D ERH GDLGN+ AG DGVA VSI DR+I LSG+HSI+GR +VVH   DDLGKG
Sbjct:    8 VLKGDGPVQGTIHFEQKASGEPVVLSGQITGLTEGQHGFHVHQYGDNTQGCTSAGPHFNPHSKKHGGPADEERHVGDLGNVTAGKDGVANVSIEDRVISLSGEHSIIGRTMVVHEKQDDLGKG 130          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_MACMU (Superoxide dismutase [Cu-Zn] OS=Macaca mulatta GN=SOD1 PE=2 SV=3)

HSP 1 Score: 155.221 bits (391), Expect = 3.131e-37
Identity = 72/123 (58.54%), Postives = 86/123 (69.92%), Query Frame = 1
Query:   88 LISGATSVKGSLHFVQGP-NGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            ++ G + V+G+++F Q   NG   V G ITGL  GLHGFH+H  GD T GC S GPHFNPL + HG P D ERH GDLGN+ AG DGVA+VS  D +I LSG HSI+GR +VVH   DDLGKG
Sbjct:    8 VLKGDSPVQGTINFEQKESNGPVKVWGSITGLTEGLHGFHVHQFGDNTQGCTSAGPHFNPLSRQHGGPKDEERHVGDLGNVTAGKDGVAKVSFEDSVISLSGDHSIIGRTLVVHEKADDLGKG 130          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_MACFU (Superoxide dismutase [Cu-Zn] OS=Macaca fuscata fuscata GN=SOD1 PE=2 SV=3)

HSP 1 Score: 155.221 bits (391), Expect = 3.131e-37
Identity = 72/123 (58.54%), Postives = 86/123 (69.92%), Query Frame = 1
Query:   88 LISGATSVKGSLHFVQGP-NGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            ++ G + V+G+++F Q   NG   V G ITGL  GLHGFH+H  GD T GC S GPHFNPL + HG P D ERH GDLGN+ AG DGVA+VS  D +I LSG HSI+GR +VVH   DDLGKG
Sbjct:    8 VLKGDSPVQGTINFEQKESNGPVKVWGSITGLTEGLHGFHVHQFGDNTQGCTSAGPHFNPLSRQHGGPKDEERHVGDLGNVTAGKDGVAKVSFEDSVISLSGDHSIIGRTLVVHEKADDLGKG 130          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_MACFA (Superoxide dismutase [Cu-Zn] OS=Macaca fascicularis GN=SOD1 PE=2 SV=3)

HSP 1 Score: 155.221 bits (391), Expect = 3.131e-37
Identity = 72/123 (58.54%), Postives = 86/123 (69.92%), Query Frame = 1
Query:   88 LISGATSVKGSLHFVQGP-NGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            ++ G + V+G+++F Q   NG   V G ITGL  GLHGFH+H  GD T GC S GPHFNPL + HG P D ERH GDLGN+ AG DGVA+VS  D +I LSG HSI+GR +VVH   DDLGKG
Sbjct:    8 VLKGDSPVQGTINFEQKESNGPVKVWGSITGLTEGLHGFHVHQFGDNTQGCTSAGPHFNPLSRQHGGPKDEERHVGDLGNVTAGKDGVAKVSFEDSVISLSGDHSIIGRTLVVHEKADDLGKG 130          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_CEBAP (Superoxide dismutase [Cu-Zn] OS=Cebus apella GN=SOD1 PE=2 SV=3)

HSP 1 Score: 155.221 bits (391), Expect = 3.131e-37
Identity = 73/123 (59.35%), Postives = 86/123 (69.92%), Query Frame = 1
Query:   88 LISGATSVKGSLHFVQGP-NGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            ++ G   V+G+++F Q   NG   V G ITGL  GLHGFH+H  GD T GC S GPHFNPL + HG P D ERH GDLGN+ AG DGVA+VSI D +I LSG HSI+GR +VVH   DDLGKG
Sbjct:    8 VLKGDGPVQGTINFEQKESNGPVKVWGSITGLAEGLHGFHVHQFGDNTQGCTSAGPHFNPLSRKHGGPEDEERHVGDLGNVTAGKDGVAKVSIEDSVISLSGDHSIIGRTLVVHEKADDLGKG 130          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_CALJA (Superoxide dismutase [Cu-Zn] OS=Callithrix jacchus GN=SOD1 PE=2 SV=3)

HSP 1 Score: 155.221 bits (391), Expect = 3.131e-37
Identity = 73/123 (59.35%), Postives = 86/123 (69.92%), Query Frame = 1
Query:   88 LISGATSVKGSLHFVQGP-NGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            ++ G   V+G+++F Q   NG   V G ITGL  GLHGFH+H  GD T GC S GPHFNPL + HG P D ERH GDLGN+ AG DGVA+VSI D +I LSG HSI+GR +VVH   DDLGKG
Sbjct:    8 VLKGDGPVQGTINFEQKESNGPVKVWGSITGLAEGLHGFHVHQFGDNTQGCTSAGPHFNPLSRKHGGPEDEERHVGDLGNVTAGKDGVAKVSIEDSVISLSGDHSIIGRTLVVHEKADDLGKG 130          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODCP_PINSY (Superoxide dismutase [Cu-Zn], chloroplastic (Fragment) OS=Pinus sylvestris GN=SODCP PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.090e-37
Identity = 74/115 (64.35%), Postives = 84/115 (73.04%), Query Frame = 1
Query:  109 VKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            V+G +   Q  NG T VK ++TGL PG HGFH+H  GDTTNGC STG HFNP K  HGAP D+ RH GDLGNIVAG DGVAE +I D  IPLSG  S++GRA+VVH   DDLGKG
Sbjct:    2 VEGVVTLSQEDNGPTTVKVRLTGLTPGKHGFHLHEFGDTTNGCMSTGSHFNPKKLTHGAPEDDVRHAGDLGNIVAGSDGVAEATIVDNQIPLSGPDSVIGRALVVHELEDDLGKG 116          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODCP_ORYSJ (Superoxide dismutase [Cu-Zn], chloroplastic OS=Oryza sativa subsp. japonica GN=SODCP PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.090e-37
Identity = 72/122 (59.02%), Postives = 86/122 (70.49%), Query Frame = 1
Query:   88 LISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            ++ G + V+G +   Q   G T V  ++TGL PGLHGFH+H  GDTTNGC STGPHFNP    HGAP D  RH GDLGNIVA  +GVAE +I D+ IPLSG +S++GRA VVH   DDLGKG
Sbjct:   65 VLKGTSQVEGVVTLTQDDQGPTTVNVRVTGLTPGLHGFHLHEFGDTTNGCISTGPHFNPNNLTHGAPEDEVRHAGDLGNIVANAEGVAEATIVDKQIPLSGPNSVVGRAFVVHELEDDLGKG 186          
The following BLAST results are available for this feature:
BLAST of CX671688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
SODE_BRUPA1.836e-3760.34Extracellular superoxide dismutase [Cu-Zn] OS=Brug... [more]
SODCP_PEA2.398e-3759.84Superoxide dismutase [Cu-Zn], chloroplastic OS=Pis... [more]
SODC_MOUSE3.131e-3759.35Superoxide dismutase [Cu-Zn] OS=Mus musculus GN=So... [more]
SODC_MACMU3.131e-3758.54Superoxide dismutase [Cu-Zn] OS=Macaca mulatta GN=... [more]
SODC_MACFU3.131e-3758.54Superoxide dismutase [Cu-Zn] OS=Macaca fuscata fus... [more]
SODC_MACFA3.131e-3758.54Superoxide dismutase [Cu-Zn] OS=Macaca fasciculari... [more]
SODC_CEBAP3.131e-3759.35Superoxide dismutase [Cu-Zn] OS=Cebus apella GN=SO... [more]
SODC_CALJA3.131e-3759.35Superoxide dismutase [Cu-Zn] OS=Callithrix jacchus... [more]
SODCP_PINSY4.090e-3764.35Superoxide dismutase [Cu-Zn], chloroplastic (Fragm... [more]
SODCP_ORYSJ4.090e-3759.02Superoxide dismutase [Cu-Zn], chloroplastic OS=Ory... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_12E09_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12E09-J18-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671688 ID=CX671688; Name=CX671688; organism=Citrus sinensis; type=EST; length=705bp
ATTTGATATCGAGAAGACCCAGATAGAGAAAGCAAGAGATAAAAAATGGA
AACAGGGGCTACAAAAGCCACAGTGAAAGCCGTGGCTCTCATTTCTGGTG
CTACCAGCGTTAAAGGCTCTCTTCACTTTGTTCAAGGACCCAACGGAGTT
ACACATGTGAAAGGGAAGATTACAGGACTGAAGCCAGGCCTTCATGGCTT
CCATATTCACGCCCTCGGTGACACCACTAATGGTTGCAATTCTACTGGAC
CTCATTTCAATCCATTGAAGAAGGATCATGGGGCTCCCAGTGATAACGAG
CGGCACACTGGTGATTTGGGAAACATTGTTGCAGGCCCTGATGGAGTTGC
TGAGGTTTCAATTGCTGACAGGATGATTCCTCTGAGCGGGCAACACTCAA
TATTGGGGAGGGCTGTTGTTGTGCACGCTGATCCTGATGATCTTGGAAAA
GGCAAGTTTAGTAGTTTGTCCTTAATTTTGATTACAAATCTTTTTTATTA
CAAGGATACAGCTTATTGGTACAAATGTACACAAAAGTATGTTTATTTTA
AACTGTCAGTTCTTTTGGAGAATAATATGTCAGGTTGAAGCTTTAGGTAA
GGATGTACAATTTTTTTTTCTTCCTCTTAGTTTCAGGTACATTGGATTCT
TTACAACTACTTTGAAGAGTTTAGTTTTAAATGTAAGAAATTCAGTGTAG
TTTGT
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