CX671688

Overview
NameCX671688
Unique NameCX671688
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_SCHMA (Superoxide dismutase [Cu-Zn] OS=Schistosoma mansoni GN=SOD PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.316e-35
Identity = 67/123 (54.47%), Postives = 87/123 (70.73%), Query Frame = 1
Query:   88 LISGATSVKGSLHFVQGP-NGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            +++G   VKG + F Q   NG  HV  + +GLK G HGFH+H  GDTTNGC S G HFNP K++HGAP D+ RH GDLGN+VAG DG A  +  D++I L+G HSI+GR +V+H + DDLG+G
Sbjct:    6 VMTGTAGVKGVVKFTQETDNGPVHVHAEFSGLKAGKHGFHVHEFGDTTNGCTSAGAHFNPTKQEHGAPEDSIRHVGDLGNVVAGADGNAVYNATDKLISLNGSHSIIGRTMVIHENEDDLGRG 128          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_DANRE (Superoxide dismutase [Cu-Zn] OS=Danio rerio GN=sod1 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.718e-35
Identity = 69/123 (56.10%), Postives = 85/123 (69.11%), Query Frame = 1
Query:   88 LISGATSVKGSLHFVQ-GPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            ++ G   V G+++F Q G      V G+ITGL PG HGFH+HA GD TNGC S GPHFNP  K HG P+D+ RH GDLGN+ A   GVA++ I D M+ LSGQHSI+GR +V+H   DDLGKG
Sbjct:    8 VLKGTGEVTGTVYFNQEGEKKPVKVTGEITGLTPGKHGFHVHAFGDNTNGCISAGPHFNPHDKTHGGPTDSVRHVGDLGNVTADASGVAKIEIEDAMLTLSGQHSIIGRTMVIHEKEDDLGKG 130          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODCP_MEDSA (Superoxide dismutase [Cu-Zn], chloroplastic OS=Medicago sativa GN=SODCP PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.718e-35
Identity = 70/122 (57.38%), Postives = 87/122 (71.31%), Query Frame = 1
Query:   88 LISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            ++ G ++V+G +   Q     T V  +ITGL PGLHGFH+H  GDTTNGC STGPHFNP +  HGAP D  RH GDLGNI+A  +GVAE +I D  IPL+G +S++GRA+VVH   DDLGKG
Sbjct:   56 VLKGNSTVEGVVTLTQENESPTTVNVRITGLTPGLHGFHLHEYGDTTNGCISTGPHFNPNQLTHGAPEDEIRHAGDLGNIIADANGVAEATIVDNQIPLTGPNSVIGRALVVHELEDDLGKG 177          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODCP_ARATH (Superoxide dismutase [Cu-Zn], chloroplastic OS=Arabidopsis thaliana GN=SODCP PE=1 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 1.718e-35
Identity = 71/122 (58.20%), Postives = 84/122 (68.85%), Query Frame = 1
Query:   88 LISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            ++ G + V+G +   Q  +G T V  +ITGL PG HGFH+H  GDTTNGC STGPHFNP    HGAP D  RH GDLGNI A  DGVAE +I D  IPL+G +S++GRA VVH   DDLGKG
Sbjct:   70 VLKGTSDVEGVVTLTQDDSGPTTVNVRITGLTPGPHGFHLHEFGDTTNGCISTGPHFNPNNMTHGAPEDECRHAGDLGNINANADGVAETTIVDNQIPLTGPNSVVGRAFVVHELKDDLGKG 191          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_CARCR (Superoxide dismutase [Cu-Zn] OS=Caretta caretta PE=1 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 2.244e-35
Identity = 68/115 (59.13%), Postives = 80/115 (69.57%), Query Frame = 1
Query:  109 VKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            VKG ++F Q  NG   + G ITGL  G HGFH+H  GD TNGC S G HFNP  K+HG P DNERH GDLGN++A  +GVAEV I D +I L+G  SI+GR +VVH   DDLGKG
Sbjct:   28 VKGIIYFEQQGNGPVTLSGSITGLTEGKHGFHVHEFGDNTNGCTSAGAHFNPPGKNHGGPQDNERHVGDLGNVIANKEGVAEVCIKDSLISLTGSQSIIGRTMVVHEKEDDLGKG 142          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODCP_VITVI (Superoxide dismutase [Cu-Zn], chloroplastic OS=Vitis vinifera GN=SODCP PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.244e-35
Identity = 70/122 (57.38%), Postives = 87/122 (71.31%), Query Frame = 1
Query:   88 LISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            ++ G +SV+G +   Q  +G T V  +ITGL PG HGFH+H  GDTTNGC STG HFNP    HGAP D+ RH GDLGNI+A  +GVAE +I D  IPLSG ++++GRA+VVH   DDLGKG
Sbjct:   66 VLKGTSSVEGVVTLSQEDDGPTTVSVRITGLTPGNHGFHLHEFGDTTNGCMSTGAHFNPNGMTHGAPEDDVRHAGDLGNIIANAEGVAEATIVDTQIPLSGPNAVIGRALVVHELEDDLGKG 187          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_CERCA (Superoxide dismutase [Cu-Zn] OS=Ceratitis capitata GN=Sod PE=3 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 2.931e-35
Identity = 69/116 (59.48%), Postives = 82/116 (70.69%), Query Frame = 1
Query:  109 VKGSLHFVQ-GPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            VKG++HF Q        V G++ GL  GLHGFH+H  GD TNGC S GPHFNP    HGAPSD  RH GDLGNI A  DG  +V I+D++I L G++SI+GR +VVHADPDDLGKG
Sbjct:   13 VKGTVHFEQQDAKSPVLVTGEVNGLAKGLHGFHVHEFGDNTNGCTSAGPHFNPYGNSHGAPSDLNRHLGDLGNIEASGDGATKVEISDKLITLFGENSIVGRTIVVHADPDDLGKG 128          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_RABIT (Superoxide dismutase [Cu-Zn] OS=Oryctolagus cuniculus GN=SOD1 PE=1 SV=3)

HSP 1 Score: 148.288 bits (373), Expect = 3.828e-35
Identity = 68/122 (55.74%), Postives = 82/122 (67.21%), Query Frame = 1
Query:   88 LISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            ++ G   V+ ++HF Q   G   VKG+ITGL  GLH FH+H  GD   GC S GPHFNPL K HG P D ERH GDLGN+ AG +GVA+V I D +I LSG  S++GR +VVH   DDLGKG
Sbjct:    8 VLKGDGPVEATIHFEQKGTGPVVVKGRITGLTEGLHEFHVHQFGDNRQGCTSAGPHFNPLSKKHGGPKDEERHVGDLGNVTAGSNGVADVLIEDSVISLSGDMSVIGRTLVVHEKEDDLGKG 129          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_ONCVO (Superoxide dismutase [Cu-Zn] OS=Onchocerca volvulus GN=sod-1 PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.999e-35
Identity = 71/117 (60.68%), Postives = 84/117 (71.79%), Query Frame = 1
Query:  106 SVKGSLHFVQGPNGV-THVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            +V G + F Q   G+ T V G++ GL PGLHGFHIH  GDTTNGC S GPHFNP  K HG  +D  RH GDLGNI AG DG A +SI+D+ I L G +SI+GR++VVHAD DDLGKG
Sbjct:   13 TVSGIIRFKQDKEGLPTTVTGEVKGLTPGLHGFHIHQYGDTTNGCISAGPHFNPYNKTHGDRTDEIRHVGDLGNIEAGADGTAHISISDQHIQLLGPNSIIGRSIVVHADQDDLGKG 129          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_PANTR (Superoxide dismutase [Cu-Zn] OS=Pan troglodytes GN=SOD1 PE=2 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 1.114e-34
Identity = 70/123 (56.91%), Postives = 82/123 (66.67%), Query Frame = 1
Query:   88 LISGATSVKGSLHFVQGP-NGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            ++ G   V+G ++F Q   NG   V G I GL  GLHGFH+H  GD T GC S GPHFNPL + HG P D ERH GDLGN+ A  DGVA+VSI D +I LSG H I+GR +VVH   DDLGKG
Sbjct:    8 VLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVADVSIEDSVISLSGDHCIIGRTLVVHEKADDLGKG 130          
The following BLAST results are available for this feature:
BLAST of CX671688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
SODC_SCHMA1.316e-3554.47Superoxide dismutase [Cu-Zn] OS=Schistosoma manson... [more]
SODC_DANRE1.718e-3556.10Superoxide dismutase [Cu-Zn] OS=Danio rerio GN=sod... [more]
SODCP_MEDSA1.718e-3557.38Superoxide dismutase [Cu-Zn], chloroplastic OS=Med... [more]
SODCP_ARATH1.718e-3558.20Superoxide dismutase [Cu-Zn], chloroplastic OS=Ara... [more]
SODC_CARCR2.244e-3559.13Superoxide dismutase [Cu-Zn] OS=Caretta caretta PE... [more]
SODCP_VITVI2.244e-3557.38Superoxide dismutase [Cu-Zn], chloroplastic OS=Vit... [more]
SODC_CERCA2.931e-3559.48Superoxide dismutase [Cu-Zn] OS=Ceratitis capitata... [more]
SODC_RABIT3.828e-3555.74Superoxide dismutase [Cu-Zn] OS=Oryctolagus cunicu... [more]
SODC_ONCVO4.999e-3560.68Superoxide dismutase [Cu-Zn] OS=Onchocerca volvulu... [more]
SODC_PANTR1.114e-3456.91Superoxide dismutase [Cu-Zn] OS=Pan troglodytes GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_12E09_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12E09-J18-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671688 ID=CX671688; Name=CX671688; organism=Citrus sinensis; type=EST; length=705bp
ATTTGATATCGAGAAGACCCAGATAGAGAAAGCAAGAGATAAAAAATGGA
AACAGGGGCTACAAAAGCCACAGTGAAAGCCGTGGCTCTCATTTCTGGTG
CTACCAGCGTTAAAGGCTCTCTTCACTTTGTTCAAGGACCCAACGGAGTT
ACACATGTGAAAGGGAAGATTACAGGACTGAAGCCAGGCCTTCATGGCTT
CCATATTCACGCCCTCGGTGACACCACTAATGGTTGCAATTCTACTGGAC
CTCATTTCAATCCATTGAAGAAGGATCATGGGGCTCCCAGTGATAACGAG
CGGCACACTGGTGATTTGGGAAACATTGTTGCAGGCCCTGATGGAGTTGC
TGAGGTTTCAATTGCTGACAGGATGATTCCTCTGAGCGGGCAACACTCAA
TATTGGGGAGGGCTGTTGTTGTGCACGCTGATCCTGATGATCTTGGAAAA
GGCAAGTTTAGTAGTTTGTCCTTAATTTTGATTACAAATCTTTTTTATTA
CAAGGATACAGCTTATTGGTACAAATGTACACAAAAGTATGTTTATTTTA
AACTGTCAGTTCTTTTGGAGAATAATATGTCAGGTTGAAGCTTTAGGTAA
GGATGTACAATTTTTTTTTCTTCCTCTTAGTTTCAGGTACATTGGATTCT
TTACAACTACTTTGAAGAGTTTAGTTTTAAATGTAAGAAATTCAGTGTAG
TTTGT
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