CX671688

Overview
NameCX671688
Unique NameCX671688
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_HUMAN (Superoxide dismutase [Cu-Zn] OS=Homo sapiens GN=SOD1 PE=1 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 1.114e-34
Identity = 70/123 (56.91%), Postives = 82/123 (66.67%), Query Frame = 1
Query:   88 LISGATSVKGSLHFVQGP-NGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            ++ G   V+G ++F Q   NG   V G I GL  GLHGFH+H  GD T GC S GPHFNPL + HG P D ERH GDLGN+ A  DGVA+VSI D +I LSG H I+GR +VVH   DDLGKG
Sbjct:    8 VLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVADVSIEDSVISLSGDHCIIGRTLVVHEKADDLGKG 130          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_DROWI (Superoxide dismutase [Cu-Zn] OS=Drosophila willistoni GN=Sod PE=3 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 1.455e-34
Identity = 70/115 (60.87%), Postives = 80/115 (69.57%), Query Frame = 1
Query:  112 KGSLHFVQGPNGV-THVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            KG++ F Q  NG    V G++TGL  GLHGFH+H  GD TNGC S+GPHFNP  K+HGAP D  RH GDLGNI A   G   V+I D  I L G +SI+GR VVVHADPDDLGKG
Sbjct:   14 KGTVFFEQEDNGAPVKVTGEVTGLGKGLHGFHVHEFGDNTNGCMSSGPHFNPHSKEHGAPGDENRHLGDLGNIEASGSGPTAVNITDSKITLVGANSIIGRTVVVHADPDDLGKG 128          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_DROVI (Superoxide dismutase [Cu-Zn] OS=Drosophila virilis GN=Sod PE=3 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 1.455e-34
Identity = 69/115 (60.00%), Postives = 82/115 (71.30%), Query Frame = 1
Query:  112 KGSLHFVQGPNGV-THVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            KG++ F Q   G    V G++TGL  G HGFH+H  GD TNGC S+GPHFNP +K+HGAP+D  RH GDLGNI+A  DG   V+I D  I L G +SI+GR VVVHADPDDLGKG
Sbjct:   14 KGTVFFEQEGEGCPVKVTGEVTGLAKGQHGFHVHEFGDNTNGCMSSGPHFNPYQKEHGAPTDENRHLGDLGNIIANGDGPTPVNICDCKITLLGANSIIGRTVVVHADPDDLGKG 128          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_CEREL (Superoxide dismutase [Cu-Zn] OS=Cervus elaphus GN=SOD1 PE=2 SV=3)

HSP 1 Score: 145.976 bits (367), Expect = 1.900e-34
Identity = 68/122 (55.74%), Postives = 83/122 (68.03%), Query Frame = 1
Query:   88 LISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            ++ G   V+G++ F    + V  V G ITGL  G HGFH+H  GD T GC S GPHFNPL K HG P D ERH GDLGN+ A  +GVA+V I D +I LSG+HSI+GR +VVH  PDDLG+G
Sbjct:    8 VLKGDGPVQGTIRFEAKGHTVV-VTGSITGLTEGDHGFHVHQFGDNTQGCTSAGPHFNPLSKKHGGPKDEERHVGDLGNVTADKNGVAKVDIVDSLISLSGEHSIIGRTMVVHEKPDDLGRG 128          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_BOSMU (Superoxide dismutase [Cu-Zn] OS=Bos mutus grunniens GN=SOD1 PE=2 SV=3)

HSP 1 Score: 145.976 bits (367), Expect = 1.900e-34
Identity = 67/122 (54.92%), Postives = 82/122 (67.21%), Query Frame = 1
Query:   88 LISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            ++ G   V+G++HF +       V G ITGL  G HGFH+H  GD T GC S GPHFNPL K HG P D ERH GDLGN+ A  +GVA V I D +I LSG++SI+GR +VVH  PDDLG+G
Sbjct:    8 VLKGDGPVQGTIHF-EAKGDTVVVTGSITGLTEGDHGFHVHQFGDNTQGCTSAGPHFNPLSKKHGGPKDEERHVGDLGNVTADKNGVAVVDIVDSLISLSGEYSIIGRTMVVHEKPDDLGRG 128          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC2_XENLA (Superoxide dismutase [Cu-Zn] B OS=Xenopus laevis GN=sod1-B PE=1 SV=3)

HSP 1 Score: 145.976 bits (367), Expect = 1.900e-34
Identity = 69/122 (56.56%), Postives = 82/122 (67.21%), Query Frame = 1
Query:   88 LISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            +++G+  VKG +HF Q   G   V+GKI GL  GLHGFHIH  GD TNGC S G HFNP  K+HGAP D +RH GDLGN+ A   GVA+  I D +I L G +SI+GR  VVH   DDLGKG
Sbjct:    7 VLAGSGDVKGVVHFEQQDEGAVSVEGKIEGLTDGLHGFHIHVFGDNTNGCMSAGSHFNPENKNHGAPGDTDRHVGDLGNVTA-EGGVAQFKITDSLISLKGPNSIIGRTAVVHEKADDLGKG 127          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_PONPY (Superoxide dismutase [Cu-Zn] OS=Pongo pygmaeus GN=SOD1 PE=2 SV=3)

HSP 1 Score: 145.591 bits (366), Expect = 2.481e-34
Identity = 70/116 (60.34%), Postives = 78/116 (67.24%), Query Frame = 1
Query:  109 VKGSLHFVQGP-NGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            VKG ++F Q   NG   V G I GL  GLHGFH+H  GD T GC S GPHFNPL + HG P D ERH GDLGN+ A  DGVA VSI D +I LSG H I+GR +VVH   DDLGKG
Sbjct:   16 VKGIINFEQKERNGPVKVWGSIEGLTEGLHGFHVHEFGDNTVGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVASVSIEDSVISLSGDHCIIGRTLVVHEKADDLGKG 131          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_HAECO (Superoxide dismutase [Cu-Zn] OS=Haemonchus contortus GN=SOD PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.481e-34
Identity = 66/123 (53.66%), Postives = 84/123 (68.29%), Query Frame = 1
Query:   88 LISGATSVKGSLHFVQGPNGVTHV-KGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            ++ G   V G++ F Q       V KG+I GL PGLHGFH+H  GD+TNGC S GPHFNP  K HG P D+ RH GDLGN+ AG DGVA   I D ++ + G+H+++GR++VVHA  DDLGKG
Sbjct:    8 VLRGDPGVTGTVWFSQDKESDPCVIKGEIKGLTPGLHGFHVHQYGDSTNGCTSAGPHFNPFNKTHGGPKDDVRHVGDLGNVEAGADGVAHFEIKDHLVKIHGEHTVVGRSLVVHAGTDDLGKG 130          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_BOVIN (Superoxide dismutase [Cu-Zn] OS=Bos taurus GN=SOD1 PE=1 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 3.240e-34
Identity = 67/122 (54.92%), Postives = 82/122 (67.21%), Query Frame = 1
Query:   88 LISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            ++ G   V+G++HF +       V G ITGL  G HGFH+H  GD T GC S GPHFNPL K HG P D ERH GDLGN+ A  +GVA V I D +I LSG++SI+GR +VVH  PDDLG+G
Sbjct:    8 VLKGDGPVQGTIHF-EAKGDTVVVTGSITGLTEGDHGFHVHQFGDNTQGCTSAGPHFNPLSKKHGGPKDEERHVGDLGNVTADKNGVAIVDIVDPLISLSGEYSIIGRTMVVHEKPDDLGRG 128          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_PIG (Superoxide dismutase [Cu-Zn] OS=Sus scrofa GN=SOD1 PE=1 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 7.219e-34
Identity = 67/122 (54.92%), Postives = 79/122 (64.75%), Query Frame = 1
Query:   88 LISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            ++ G   V+G+++F         V G I GL  G HGFH+H  GD T GC S GPHFNP  K HG P D ERH GDLGN+ AG DGVA V I D +I LSG HSI+GR +VVH  PDDLG+G
Sbjct:    8 VLKGDGPVQGTIYFELKGEKTVLVTGTIKGLAEGDHGFHVHQFGDNTQGCTSAGPHFNPESKKHGGPKDQERHVGDLGNVTAGKDGVATVYIEDSVIALSGDHSIIGRTMVVHEKPDDLGRG 129          
The following BLAST results are available for this feature:
BLAST of CX671688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
SODC_HUMAN1.114e-3456.91Superoxide dismutase [Cu-Zn] OS=Homo sapiens GN=SO... [more]
SODC_DROWI1.455e-3460.87Superoxide dismutase [Cu-Zn] OS=Drosophila willist... [more]
SODC_DROVI1.455e-3460.00Superoxide dismutase [Cu-Zn] OS=Drosophila virilis... [more]
SODC_CEREL1.900e-3455.74Superoxide dismutase [Cu-Zn] OS=Cervus elaphus GN=... [more]
SODC_BOSMU1.900e-3454.92Superoxide dismutase [Cu-Zn] OS=Bos mutus grunnien... [more]
SODC2_XENLA1.900e-3456.56Superoxide dismutase [Cu-Zn] B OS=Xenopus laevis G... [more]
SODC_PONPY2.481e-3460.34Superoxide dismutase [Cu-Zn] OS=Pongo pygmaeus GN=... [more]
SODC_HAECO2.481e-3453.66Superoxide dismutase [Cu-Zn] OS=Haemonchus contort... [more]
SODC_BOVIN3.240e-3454.92Superoxide dismutase [Cu-Zn] OS=Bos taurus GN=SOD1... [more]
SODC_PIG7.219e-3454.92Superoxide dismutase [Cu-Zn] OS=Sus scrofa GN=SOD1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_12E09_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12E09-J18-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671688 ID=CX671688; Name=CX671688; organism=Citrus sinensis; type=EST; length=705bp
ATTTGATATCGAGAAGACCCAGATAGAGAAAGCAAGAGATAAAAAATGGA
AACAGGGGCTACAAAAGCCACAGTGAAAGCCGTGGCTCTCATTTCTGGTG
CTACCAGCGTTAAAGGCTCTCTTCACTTTGTTCAAGGACCCAACGGAGTT
ACACATGTGAAAGGGAAGATTACAGGACTGAAGCCAGGCCTTCATGGCTT
CCATATTCACGCCCTCGGTGACACCACTAATGGTTGCAATTCTACTGGAC
CTCATTTCAATCCATTGAAGAAGGATCATGGGGCTCCCAGTGATAACGAG
CGGCACACTGGTGATTTGGGAAACATTGTTGCAGGCCCTGATGGAGTTGC
TGAGGTTTCAATTGCTGACAGGATGATTCCTCTGAGCGGGCAACACTCAA
TATTGGGGAGGGCTGTTGTTGTGCACGCTGATCCTGATGATCTTGGAAAA
GGCAAGTTTAGTAGTTTGTCCTTAATTTTGATTACAAATCTTTTTTATTA
CAAGGATACAGCTTATTGGTACAAATGTACACAAAAGTATGTTTATTTTA
AACTGTCAGTTCTTTTGGAGAATAATATGTCAGGTTGAAGCTTTAGGTAA
GGATGTACAATTTTTTTTTCTTCCTCTTAGTTTCAGGTACATTGGATTCT
TTACAACTACTTTGAAGAGTTTAGTTTTAAATGTAAGAAATTCAGTGTAG
TTTGT
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