CX671688

Overview
NameCX671688
Unique NameCX671688
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_CHYAM (Superoxide dismutase [Cu-Zn] OS=Chymomyza amoena GN=Sod PE=3 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 7.219e-34
Identity = 70/115 (60.87%), Postives = 82/115 (71.30%), Query Frame = 1
Query:  112 KGSLHFVQGPN-GVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            KG+++F Q        V G+ITGL  G HGFH+H  GD TNGC S+GPHFNPL K+HGAP+D  RH GDLGNI A  DG  +V I D  I L G++SI+GR VVVHADPDDLGKG
Sbjct:   14 KGTVYFEQEDACAPVKVCGEITGLNKGQHGFHVHEFGDNTNGCMSSGPHFNPLNKEHGAPTDENRHLGDLGNIEAPGDGPTKVCINDSKITLFGENSIVGRTVVVHADPDDLGKG 128          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_CAPHI (Superoxide dismutase [Cu-Zn] OS=Capra hircus GN=SOD1 PE=2 SV=3)

HSP 1 Score: 144.05 bits (362), Expect = 7.219e-34
Identity = 68/122 (55.74%), Postives = 83/122 (68.03%), Query Frame = 1
Query:   88 LISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            ++ G   V+G++HF    + V  V G ITGL  G HGFH+H  GD T GC S GPHFNPL K HG P D ERH GDLGN+ A  +GVA V I D +I LSG++SI+GR +VVH  PDDLG+G
Sbjct:    8 VLKGDGPVQGTIHFEAKGDKVV-VTGSITGLTEGDHGFHVHQFGDNTQGCTSAGPHFNPLSKKHGGPKDEERHVGDLGNVKADKNGVAIVDIVDPLISLSGEYSIIGRTMVVHEKPDDLGRG 128          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_CHICK (Superoxide dismutase [Cu-Zn] OS=Gallus gallus GN=SOD1 PE=1 SV=3)

HSP 1 Score: 142.51 bits (358), Expect = 2.100e-33
Identity = 68/122 (55.74%), Postives = 81/122 (66.39%), Query Frame = 1
Query:   88 LISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            ++ G   V+G +HF Q  +G   V GKITGL  G HGFH+H  GD TNGC S G HFNP  K HG P D +RH GDLGN+ A   GVAEV I D +I L+G H I+GR +VVHA  DDLG+G
Sbjct:    9 VMKGDAPVEGVIHFQQQGSGPVKVTGKITGLSDGDHGFHVHEFGDNTNGCTSAGAHFNPEGKQHGGPKDADRHVGDLGNVTA-KGGVAEVEIEDSVISLTGPHCIIGRTMVVHAKSDDLGRG 129          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_DROBS (Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosophila busckii GN=Sod PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.743e-33
Identity = 69/115 (60.00%), Postives = 79/115 (68.70%), Query Frame = 1
Query:  112 KGSLHFVQGPNGV-THVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            KG++ F Q        V G++TGL  GLHGFH+H  GD TNGC S+GPHFNP  K+HGAP+D  RH GDLGNI A  DG   V I D  I L G +SI+GR VVVHADPDDLGKG
Sbjct:    6 KGTVFFEQESEKCPVKVTGEVTGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPQGKEHGAPTDENRHLGDLGNITATGDGPTAVDICDCKITLFGANSIIGRTVVVHADPDDLGKG 120          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_SHEEP (Superoxide dismutase [Cu-Zn] OS=Ovis aries GN=SOD1 PE=1 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 6.111e-33
Identity = 67/122 (54.92%), Postives = 82/122 (67.21%), Query Frame = 1
Query:   88 LISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            ++ G   V+G++ F    + V  V G ITGL  G HGFH+H  GD T GC S GPHFNPL K HG P D ERH GDLGN+ A  +GVA V I D +I LSG++SI+GR +VVH  PDDLG+G
Sbjct:    8 VLKGDGPVQGTIRFEAKGDKVV-VTGSITGLTEGDHGFHVHQFGDNTQGCTSAGPHFNPLSKKHGGPKDEERHVGDLGNVKADKNGVAIVDIVDPLISLSGEYSIIGRTMVVHEKPDDLGRG 128          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODE_ONCVO (Extracellular superoxide dismutase [Cu-Zn] OS=Onchocerca volvulus GN=sod-4 PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.042e-32
Identity = 65/123 (52.85%), Postives = 84/123 (68.29%), Query Frame = 1
Query:   88 LISGATSVKGSLHFVQGPNG-VTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            ++ G   V G ++F QG  G +T + G ++GL PGLHGFH+H  GD TNGC S G H+NP  K HG P+D  +H GDLGNIVAG +GVAEV I    I L G  S++G ++VVHA+ DDLG+G
Sbjct:   50 VLRGDAGVSGIIYFQQGSGGSITTISGSVSGLTPGLHGFHVHQYGDQTNGCTSAGDHYNPFGKTHGGPNDRIKHIGDLGNIVAGANGVAEVYINSYDIKLRGPLSVIGHSLVVHANTDDLGQG 172          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC1_DICDI (Superoxide dismutase [Cu-Zn] 1 OS=Dictyostelium discoideum GN=sodA PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.042e-32
Identity = 67/116 (57.76%), Postives = 83/116 (71.55%), Query Frame = 1
Query:  109 VKGSLHFVQ-GPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            V G + F Q   +    V   ITGL+ G HGFH+HA GDTTNGC S GPHFNP  K+HGAPSD +RH GDLGNIVA  +   + +I+D++I L G+H+I+GR +VVHAD DDLGKG
Sbjct:   14 VNGVVKFTQENKDSPVTVNYDITGLEKGEHGFHVHAFGDTTNGCVSAGPHFNPFGKNHGAPSDEDRHVGDLGNIVADGESNTKGTISDKIISLFGEHTIVGRTMVVHADQDDLGKG 129          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC1_XENLA (Superoxide dismutase [Cu-Zn] A OS=Xenopus laevis GN=sod1-A PE=1 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 3.961e-32
Identity = 66/122 (54.10%), Postives = 80/122 (65.57%), Query Frame = 1
Query:   88 LISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            +++G+  VKG + F Q  +G   V+GKI GL  G HGFHIH  GD TNGC S GPHFNP  K+HG+P D +RH GDLGN+ A   GVA+    D  I L G+ SI+GR  VVH   DDLGKG
Sbjct:    7 VLAGSGDVKGVVRFEQQDDGDVTVEGKIEGLTDGNHGFHIHVFGDNTNGCLSAGPHFNPQNKNHGSPKDADRHVGDLGNVTA-EGGVAQFKFTDPQISLKGERSIIGRTAVVHEKQDDLGKG 127          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_CAEBR (Superoxide dismutase [Cu-Zn] OS=Caenorhabditis briggsae GN=sod-1 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.174e-32
Identity = 59/99 (59.60%), Postives = 76/99 (76.77%), Query Frame = 1
Query:  157 VKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            ++G+I GL PGLHGFH+H  GD+TNGC S GPHFNP  K HG P+   RH GDLGN+ AG DGVA+V I D++I L G ++++GR++VVHA  DDLG+G
Sbjct:   53 IEGEIKGLTPGLHGFHVHQYGDSTNGCLSAGPHFNPFGKTHGGPNSETRHVGDLGNVEAGADGVAKVHITDKLITLYGANTVIGRSMVVHAGQDDLGQG 151          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_DROPS (Superoxide dismutase [Cu-Zn] OS=Drosophila pseudoobscura pseudoobscura GN=Sod PE=3 SV=3)

HSP 1 Score: 137.502 bits (345), Expect = 6.757e-32
Identity = 67/115 (58.26%), Postives = 77/115 (66.96%), Query Frame = 1
Query:  112 KGSLHFVQGPNGV-THVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            KG++ F Q  +     V G++ GL  GLHGFH+H  GD TNGC S+GPHFNP  K+HGAP+D  RH GDLGNI A  D    VSI D  I L G  SI+GR VVVHAD DDLGKG
Sbjct:   13 KGTVFFEQETSEAPVKVTGEVLGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPRNKEHGAPTDENRHLGDLGNIQAAGDSPTAVSITDSKITLFGADSIIGRTVVVHADADDLGKG 127          
The following BLAST results are available for this feature:
BLAST of CX671688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
SODC_CHYAM7.219e-3460.87Superoxide dismutase [Cu-Zn] OS=Chymomyza amoena G... [more]
SODC_CAPHI7.219e-3455.74Superoxide dismutase [Cu-Zn] OS=Capra hircus GN=SO... [more]
SODC_CHICK2.100e-3355.74Superoxide dismutase [Cu-Zn] OS=Gallus gallus GN=S... [more]
SODC_DROBS2.743e-3360.00Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosoph... [more]
SODC_SHEEP6.111e-3354.92Superoxide dismutase [Cu-Zn] OS=Ovis aries GN=SOD1... [more]
SODE_ONCVO1.042e-3252.85Extracellular superoxide dismutase [Cu-Zn] OS=Onch... [more]
SODC1_DICDI1.042e-3257.76Superoxide dismutase [Cu-Zn] 1 OS=Dictyostelium di... [more]
SODC1_XENLA3.961e-3254.10Superoxide dismutase [Cu-Zn] A OS=Xenopus laevis G... [more]
SODC_CAEBR5.174e-3259.60Superoxide dismutase [Cu-Zn] OS=Caenorhabditis bri... [more]
SODC_DROPS6.757e-3258.26Superoxide dismutase [Cu-Zn] OS=Drosophila pseudoo... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS10_12E09_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12E09-J18-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671688 ID=CX671688; Name=CX671688; organism=Citrus sinensis; type=EST; length=705bp
ATTTGATATCGAGAAGACCCAGATAGAGAAAGCAAGAGATAAAAAATGGA
AACAGGGGCTACAAAAGCCACAGTGAAAGCCGTGGCTCTCATTTCTGGTG
CTACCAGCGTTAAAGGCTCTCTTCACTTTGTTCAAGGACCCAACGGAGTT
ACACATGTGAAAGGGAAGATTACAGGACTGAAGCCAGGCCTTCATGGCTT
CCATATTCACGCCCTCGGTGACACCACTAATGGTTGCAATTCTACTGGAC
CTCATTTCAATCCATTGAAGAAGGATCATGGGGCTCCCAGTGATAACGAG
CGGCACACTGGTGATTTGGGAAACATTGTTGCAGGCCCTGATGGAGTTGC
TGAGGTTTCAATTGCTGACAGGATGATTCCTCTGAGCGGGCAACACTCAA
TATTGGGGAGGGCTGTTGTTGTGCACGCTGATCCTGATGATCTTGGAAAA
GGCAAGTTTAGTAGTTTGTCCTTAATTTTGATTACAAATCTTTTTTATTA
CAAGGATACAGCTTATTGGTACAAATGTACACAAAAGTATGTTTATTTTA
AACTGTCAGTTCTTTTGGAGAATAATATGTCAGGTTGAAGCTTTAGGTAA
GGATGTACAATTTTTTTTTCTTCCTCTTAGTTTCAGGTACATTGGATTCT
TTACAACTACTTTGAAGAGTTTAGTTTTAAATGTAAGAAATTCAGTGTAG
TTTGT
back to top