CX671688

Overview
NameCX671688
Unique NameCX671688
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_HORSE (Superoxide dismutase [Cu-Zn] OS=Equus caballus GN=SOD1 PE=1 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.153e-31
Identity = 66/123 (53.66%), Postives = 79/123 (64.23%), Query Frame = 1
Query:   88 LISGATSVKGSLHFVQGPNGVTHV-KGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            ++ G   V G +HF Q   G   V KG I GL  G HGFH+H  GD T GC + G HFNPL K HG P D ERH GDLGN+ A  +G A+V + D +I LSG+HSI+GR +VVH   DDLGKG
Sbjct:    8 VLKGDGPVHGVIHFEQQQEGGPVVLKGFIEGLTKGDHGFHVHEFGDNTQGCTTAGAHFNPLSKKHGGPKDEERHVGDLGNVTADENGKADVDMKDSVISLSGKHSIIGRTMVVHEKQDDLGKG 130          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_DROSI (Superoxide dismutase [Cu-Zn] OS=Drosophila simulans GN=Sod PE=3 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 2.568e-31
Identity = 66/115 (57.39%), Postives = 78/115 (67.83%), Query Frame = 1
Query:  112 KGSLHFVQGPNGV-THVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            KG++ F Q  +G    V G++ GL  GLHGFH+H  GD TNGC S+GPHFNP  K+HGAP D  RH GDLGNI A  D   +V+I D  I L G  SI+GR VVVHAD DDLG+G
Sbjct:   14 KGTVFFEQESSGTPVKVSGEVCGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPYGKEHGAPVDENRHLGDLGNIEATGDCPTKVNITDSKITLFGADSIIGRTVVVHADADDLGQG 128          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_DROSE (Superoxide dismutase [Cu-Zn] OS=Drosophila sechellia GN=Sod PE=3 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 2.568e-31
Identity = 66/115 (57.39%), Postives = 78/115 (67.83%), Query Frame = 1
Query:  112 KGSLHFVQGPNGV-THVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            KG++ F Q  +G    V G++ GL  GLHGFH+H  GD TNGC S+GPHFNP  K+HGAP D  RH GDLGNI A  D   +V+I D  I L G  SI+GR VVVHAD DDLG+G
Sbjct:   14 KGTVFFEQESSGTPVKVSGEVCGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPYGKEHGAPVDENRHLGDLGNIEATGDCPTKVNITDSKITLFGADSIIGRTVVVHADADDLGQG 128          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_DROME (Superoxide dismutase [Cu-Zn] OS=Drosophila melanogaster GN=Sod PE=1 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 2.568e-31
Identity = 66/115 (57.39%), Postives = 78/115 (67.83%), Query Frame = 1
Query:  112 KGSLHFVQGPNGV-THVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            KG++ F Q  +G    V G++ GL  GLHGFH+H  GD TNGC S+GPHFNP  K+HGAP D  RH GDLGNI A  D   +V+I D  I L G  SI+GR VVVHAD DDLG+G
Sbjct:   14 KGTVFFEQESSGTPVKVSGEVCGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPYGKEHGAPVDENRHLGDLGNIEATGDCPTKVNITDSKITLFGADSIIGRTVVVHADADDLGQG 128          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_DROMA (Superoxide dismutase [Cu-Zn] OS=Drosophila mauritiana GN=Sod PE=3 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 2.568e-31
Identity = 66/115 (57.39%), Postives = 78/115 (67.83%), Query Frame = 1
Query:  112 KGSLHFVQGPNGV-THVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            KG++ F Q  +G    V G++ GL  GLHGFH+H  GD TNGC S+GPHFNP  K+HGAP D  RH GDLGNI A  D   +V+I D  I L G  SI+GR VVVHAD DDLG+G
Sbjct:   14 KGTVFFEQESSGTPVKVSGEVCGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPYGKEHGAPVDENRHLGDLGNIEATGDCPTKVNITDSKITLFGADSIIGRTVVVHADADDLGQG 128          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_DROYA (Superoxide dismutase [Cu-Zn] OS=Drosophila yakuba GN=Sod PE=3 SV=3)

HSP 1 Score: 135.191 bits (339), Expect = 3.353e-31
Identity = 67/115 (58.26%), Postives = 77/115 (66.96%), Query Frame = 1
Query:  112 KGSLHFVQGPNGV-THVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            KG++ F Q  +     V G++ GL  GLHGFH+H  GD TNGC S+GPHFNP  K+HGAP D  RH GDLGNI A  D   +VSI D  I L G  SI+GR VVVHAD DDLGKG
Sbjct:   14 KGTVFFEQESSETPVKVSGEVCGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPYGKEHGAPVDENRHLGDLGNIEATGDCPTKVSITDSKITLFGADSIIGRTVVVHADADDLGKG 128          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_DROOR (Superoxide dismutase [Cu-Zn] OS=Drosophila orena GN=Sod PE=3 SV=3)

HSP 1 Score: 135.191 bits (339), Expect = 3.353e-31
Identity = 67/115 (58.26%), Postives = 77/115 (66.96%), Query Frame = 1
Query:  112 KGSLHFVQGPNGV-THVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            KG++ F Q  +     V G++ GL  GLHGFH+H  GD TNGC S+GPHFNP  K+HGAP D  RH GDLGNI A  D   +VSI D  I L G  SI+GR VVVHAD DDLGKG
Sbjct:   14 KGTVFFEQESSETPVKVSGEVCGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPYGKEHGAPVDENRHLGDLGNIEATGDCPTKVSITDSRITLFGADSIIGRTVVVHADADDLGKG 128          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_CAEEL (Superoxide dismutase [Cu-Zn] OS=Caenorhabditis elegans GN=sod-1 PE=1 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 3.353e-31
Identity = 60/117 (51.28%), Postives = 81/117 (69.23%), Query Frame = 1
Query:  106 SVKGSLHFVQ-GPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            +V G++   Q   N    ++G+I GL PGLHGFH+H  GD+TNGC S GPHFNP  K HG P    RH GDLGN+ AG DGVA++ + D ++ L G ++++GR++VVHA  DDLG+G
Sbjct:   35 TVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISAGPHFNPFGKTHGGPKSEIRHVGDLGNVEAGADGVAKIKLTDTLVTLYGPNTVVGRSMVVHAGQDDLGEG 151          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_DROTE (Superoxide dismutase [Cu-Zn] OS=Drosophila teissieri GN=Sod PE=3 SV=3)

HSP 1 Score: 133.65 bits (335), Expect = 9.757e-31
Identity = 66/115 (57.39%), Postives = 77/115 (66.96%), Query Frame = 1
Query:  112 KGSLHFVQGPNGV-THVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            KG++ F Q  +     V G++ GL  GLHGFH+H  GD TNGC S+GPHFNP  K+HGAP D  RH GDLGNI A  D   +VSI D  I L G  SI+GR VVVHAD DDLG+G
Sbjct:   14 KGTVFFEQESSETPVKVSGEVCGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPYGKEHGAPVDENRHLGDLGNIEATGDCPTKVSITDSKITLFGADSIIGRTVVVHADADDLGQG 128          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC5_DICDI (Superoxide dismutase [Cu-Zn] 5 OS=Dictyostelium discoideum GN=sodE PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.274e-30
Identity = 62/116 (53.45%), Postives = 80/116 (68.97%), Query Frame = 1
Query:  109 VKGSLHFVQGPN-GVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            V G ++F Q  N     + G I+GLK G HGFH+H  GDTTNGC S G HFNP KK+HG+P+D  RH GDLGNI +  D  + ++I D +I L GQ+SI+GR++VVH   DDLG+G
Sbjct:   12 VDGIINFKQNDNKSPVIISGVISGLKEGKHGFHVHEFGDTTNGCLSAGAHFNPFKKEHGSPNDENRHVGDLGNIESNKDKKSIINITDNIITLFGQNSIIGRSIVVHDKEDDLGRG 127          
The following BLAST results are available for this feature:
BLAST of CX671688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
SODC_HORSE1.153e-3153.66Superoxide dismutase [Cu-Zn] OS=Equus caballus GN=... [more]
SODC_DROSI2.568e-3157.39Superoxide dismutase [Cu-Zn] OS=Drosophila simulan... [more]
SODC_DROSE2.568e-3157.39Superoxide dismutase [Cu-Zn] OS=Drosophila sechell... [more]
SODC_DROME2.568e-3157.39Superoxide dismutase [Cu-Zn] OS=Drosophila melanog... [more]
SODC_DROMA2.568e-3157.39Superoxide dismutase [Cu-Zn] OS=Drosophila mauriti... [more]
SODC_DROYA3.353e-3158.26Superoxide dismutase [Cu-Zn] OS=Drosophila yakuba ... [more]
SODC_DROOR3.353e-3158.26Superoxide dismutase [Cu-Zn] OS=Drosophila orena G... [more]
SODC_CAEEL3.353e-3151.28Superoxide dismutase [Cu-Zn] OS=Caenorhabditis ele... [more]
SODC_DROTE9.757e-3157.39Superoxide dismutase [Cu-Zn] OS=Drosophila teissie... [more]
SODC5_DICDI1.274e-3053.45Superoxide dismutase [Cu-Zn] 5 OS=Dictyostelium di... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_12E09_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12E09-J18-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671688 ID=CX671688; Name=CX671688; organism=Citrus sinensis; type=EST; length=705bp
ATTTGATATCGAGAAGACCCAGATAGAGAAAGCAAGAGATAAAAAATGGA
AACAGGGGCTACAAAAGCCACAGTGAAAGCCGTGGCTCTCATTTCTGGTG
CTACCAGCGTTAAAGGCTCTCTTCACTTTGTTCAAGGACCCAACGGAGTT
ACACATGTGAAAGGGAAGATTACAGGACTGAAGCCAGGCCTTCATGGCTT
CCATATTCACGCCCTCGGTGACACCACTAATGGTTGCAATTCTACTGGAC
CTCATTTCAATCCATTGAAGAAGGATCATGGGGCTCCCAGTGATAACGAG
CGGCACACTGGTGATTTGGGAAACATTGTTGCAGGCCCTGATGGAGTTGC
TGAGGTTTCAATTGCTGACAGGATGATTCCTCTGAGCGGGCAACACTCAA
TATTGGGGAGGGCTGTTGTTGTGCACGCTGATCCTGATGATCTTGGAAAA
GGCAAGTTTAGTAGTTTGTCCTTAATTTTGATTACAAATCTTTTTTATTA
CAAGGATACAGCTTATTGGTACAAATGTACACAAAAGTATGTTTATTTTA
AACTGTCAGTTCTTTTGGAGAATAATATGTCAGGTTGAAGCTTTAGGTAA
GGATGTACAATTTTTTTTTCTTCCTCTTAGTTTCAGGTACATTGGATTCT
TTACAACTACTTTGAAGAGTTTAGTTTTAAATGTAAGAAATTCAGTGTAG
TTTGT
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