CX671680
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_MYXXA (RNA polymerase sigma factor rpoD OS=Myxococcus xanthus GN=rpoD PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 8.222e-13 Identity = 38/72 (52.78%), Postives = 47/72 (65.28%), Query Frame = 2 Query: 563 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778 ER E + + R LVVSIA Y +GL DLIQEG+IGL++ +F +RGYK STY WWI+QAI R I Sbjct: 468 ERAKSELVEANLR-LVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQAITRAI 538
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_MYCTU (RNA polymerase sigma factor rpoD OS=Mycobacterium tuberculosis GN=rpoD PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 8.222e-13 Identity = 32/76 (42.11%), Postives = 54/76 (71.05%), Query Frame = 2 Query: 554 LCKERE-SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778 +C++ + ++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY WWI+QAI R + Sbjct: 284 ICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAM 359
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_MYCBO (RNA polymerase sigma factor rpoD OS=Mycobacterium bovis GN=rpoD PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 8.222e-13 Identity = 32/76 (42.11%), Postives = 54/76 (71.05%), Query Frame = 2 Query: 554 LCKERE-SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778 +C++ + ++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY WWI+QAI R + Sbjct: 284 ICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAM 359
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_BACHD (RNA polymerase sigma factor rpoD OS=Bacillus halodurans GN=sigA PE=3 SV=2) HSP 1 Score: 74.3294 bits (181), Expect = 8.222e-13 Identity = 33/72 (45.83%), Postives = 50/72 (69.44%), Query Frame = 2 Query: 563 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778 + E++ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K STY WWI+QAI R I Sbjct: 132 DEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYNKGFKFSTYATWWIRQAITRAI 203
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_CLOAB (RNA polymerase sigma factor rpoD OS=Clostridium acetobutylicum GN=rpoD PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 1.074e-12 Identity = 32/72 (44.44%), Postives = 52/72 (72.22%), Query Frame = 2 Query: 563 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778 +R +++++ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ ++G+K STY WWI+QAI R I Sbjct: 138 DRSARKKLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDFKKGFKFSTYATWWIRQAITRAI 209
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: HRDD_STRCO (RNA polymerase principal sigma factor hrdD OS=Streptomyces coelicolor GN=hrdD PE=3 SV=2) HSP 1 Score: 73.9442 bits (180), Expect = 1.074e-12 Identity = 52/149 (34.90%), Postives = 82/149 (55.03%), Query Frame = 2 Query: 347 GEL-DYNLVKCKTSNLYLTP----SEEAEICYSLKEGAKLEEARKTVAQAEEHESISKQLAKATGMKQSKVDKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778 GEL D +LV + TP ++E E+ +++ G AR+ + EE A AT + ++ ++ + +++ IRS LVV++A Y GL L DLIQEG+ GL+R ++F+ +G+K STY WWI+QAI R+I Sbjct: 28 GELADRDLVGMYLDEIARTPLLDAAKEVELSQTIEAGVF---ARQVLEGYEETG------ADAT---REELQALIDESERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQAITRSI 164
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: HRDB_STRGR (RNA polymerase principal sigma factor hrdB OS=Streptomyces griseus GN=hrdB PE=1 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 1.074e-12 Identity = 32/71 (45.07%), Postives = 49/71 (69.01%), Query Frame = 2 Query: 566 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778 R ++ ++ + LVVS+A Y G+G+ DLIQEG++GL+R ++F+ +GYK STY WWI+QAI R + Sbjct: 275 RRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAM 345
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: HRDB_STRCO (RNA polymerase principal sigma factor hrdB OS=Streptomyces coelicolor GN=hrdB PE=3 SV=2) HSP 1 Score: 73.9442 bits (180), Expect = 1.074e-12 Identity = 32/71 (45.07%), Postives = 49/71 (69.01%), Query Frame = 2 Query: 566 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778 R ++ ++ + LVVS+A Y G+G+ DLIQEG++GL+R ++F+ +GYK STY WWI+QAI R + Sbjct: 272 RRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAM 342
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_RICTY (RNA polymerase sigma factor rpoD OS=Rickettsia typhi GN=rpoD PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.402e-12 Identity = 34/70 (48.57%), Postives = 47/70 (67.14%), Query Frame = 2 Query: 569 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778 ++++ +I + LV+SIA Y +GL DLIQEG+IGL++ +F RGYK STY WWI+QAI R I Sbjct: 381 QAKKDMIEANLRLVISIAKKYANRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRAI 450
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_RICPR (RNA polymerase sigma factor rpoD OS=Rickettsia prowazekii GN=rpoD PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.402e-12 Identity = 34/70 (48.57%), Postives = 47/70 (67.14%), Query Frame = 2 Query: 569 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778 ++++ +I + LV+SIA Y +GL DLIQEG+IGL++ +F RGYK STY WWI+QAI R I Sbjct: 381 QAKKDMIEANLRLVISIAKKYANRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRAI 450 The following BLAST results are available for this feature:
BLAST of CX671680 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 95
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX671680 ID=CX671680; Name=CX671680; organism=Citrus sinensis; type=EST; length=778bpback to top |