CX671680

Overview
NameCX671680
Unique NameCX671680
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length778
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_MYXXA (RNA polymerase sigma factor rpoD OS=Myxococcus xanthus GN=rpoD PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.222e-13
Identity = 38/72 (52.78%), Postives = 47/72 (65.28%), Query Frame = 2
Query:  563 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778
            ER   E +  + R LVVSIA  Y  +GL   DLIQEG+IGL++   +F  +RGYK STY  WWI+QAI R I
Sbjct:  468 ERAKSELVEANLR-LVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQAITRAI 538          
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_MYCTU (RNA polymerase sigma factor rpoD OS=Mycobacterium tuberculosis GN=rpoD PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.222e-13
Identity = 32/76 (42.11%), Postives = 54/76 (71.05%), Query Frame = 2
Query:  554 LCKERE-SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778
            +C++ + ++  ++ +   LVVS+A  Y G+G++  DLIQEG++GL+R  ++F+  +GYK STY  WWI+QAI R +
Sbjct:  284 ICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAM 359          
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_MYCBO (RNA polymerase sigma factor rpoD OS=Mycobacterium bovis GN=rpoD PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.222e-13
Identity = 32/76 (42.11%), Postives = 54/76 (71.05%), Query Frame = 2
Query:  554 LCKERE-SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778
            +C++ + ++  ++ +   LVVS+A  Y G+G++  DLIQEG++GL+R  ++F+  +GYK STY  WWI+QAI R +
Sbjct:  284 ICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAM 359          
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_BACHD (RNA polymerase sigma factor rpoD OS=Bacillus halodurans GN=sigA PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 8.222e-13
Identity = 33/72 (45.83%), Postives = 50/72 (69.44%), Query Frame = 2
Query:  563 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778
            + E++ R+  +   LVVSIA  Y G+G+   DLIQEG++GL++  ++F+  +G+K STY  WWI+QAI R I
Sbjct:  132 DEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYNKGFKFSTYATWWIRQAITRAI 203          
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_CLOAB (RNA polymerase sigma factor rpoD OS=Clostridium acetobutylicum GN=rpoD PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.074e-12
Identity = 32/72 (44.44%), Postives = 52/72 (72.22%), Query Frame = 2
Query:  563 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778
            +R +++++  +   LVVSIA  Y G+G+   DLIQEG++GL++  ++F+ ++G+K STY  WWI+QAI R I
Sbjct:  138 DRSARKKLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDFKKGFKFSTYATWWIRQAITRAI 209          
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: HRDD_STRCO (RNA polymerase principal sigma factor hrdD OS=Streptomyces coelicolor GN=hrdD PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.074e-12
Identity = 52/149 (34.90%), Postives = 82/149 (55.03%), Query Frame = 2
Query:  347 GEL-DYNLVKCKTSNLYLTP----SEEAEICYSLKEGAKLEEARKTVAQAEEHESISKQLAKATGMKQSKVDKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778
            GEL D +LV      +  TP    ++E E+  +++ G     AR+ +   EE        A AT   + ++  ++ +   +++  IRS   LVV++A  Y   GL L DLIQEG+ GL+R  ++F+  +G+K STY  WWI+QAI R+I
Sbjct:   28 GELADRDLVGMYLDEIARTPLLDAAKEVELSQTIEAGVF---ARQVLEGYEETG------ADAT---REELQALIDESERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQAITRSI 164          
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: HRDB_STRGR (RNA polymerase principal sigma factor hrdB OS=Streptomyces griseus GN=hrdB PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.074e-12
Identity = 32/71 (45.07%), Postives = 49/71 (69.01%), Query Frame = 2
Query:  566 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778
            R ++  ++ +   LVVS+A  Y G+G+   DLIQEG++GL+R  ++F+  +GYK STY  WWI+QAI R +
Sbjct:  275 RRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAM 345          
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: HRDB_STRCO (RNA polymerase principal sigma factor hrdB OS=Streptomyces coelicolor GN=hrdB PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.074e-12
Identity = 32/71 (45.07%), Postives = 49/71 (69.01%), Query Frame = 2
Query:  566 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778
            R ++  ++ +   LVVS+A  Y G+G+   DLIQEG++GL+R  ++F+  +GYK STY  WWI+QAI R +
Sbjct:  272 RRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAM 342          
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_RICTY (RNA polymerase sigma factor rpoD OS=Rickettsia typhi GN=rpoD PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.402e-12
Identity = 34/70 (48.57%), Postives = 47/70 (67.14%), Query Frame = 2
Query:  569 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778
            ++++ +I +   LV+SIA  Y  +GL   DLIQEG+IGL++   +F   RGYK STY  WWI+QAI R I
Sbjct:  381 QAKKDMIEANLRLVISIAKKYANRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRAI 450          
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_RICPR (RNA polymerase sigma factor rpoD OS=Rickettsia prowazekii GN=rpoD PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.402e-12
Identity = 34/70 (48.57%), Postives = 47/70 (67.14%), Query Frame = 2
Query:  569 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778
            ++++ +I +   LV+SIA  Y  +GL   DLIQEG+IGL++   +F   RGYK STY  WWI+QAI R I
Sbjct:  381 QAKKDMIEANLRLVISIAKKYANRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRAI 450          
The following BLAST results are available for this feature:
BLAST of CX671680 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
RPOD_MYXXA8.222e-1352.78RNA polymerase sigma factor rpoD OS=Myxococcus xan... [more]
RPOD_MYCTU8.222e-1342.11RNA polymerase sigma factor rpoD OS=Mycobacterium ... [more]
RPOD_MYCBO8.222e-1342.11RNA polymerase sigma factor rpoD OS=Mycobacterium ... [more]
RPOD_BACHD8.222e-1345.83RNA polymerase sigma factor rpoD OS=Bacillus halod... [more]
RPOD_CLOAB1.074e-1244.44RNA polymerase sigma factor rpoD OS=Clostridium ac... [more]
HRDD_STRCO1.074e-1234.90RNA polymerase principal sigma factor hrdD OS=Stre... [more]
HRDB_STRGR1.074e-1245.07RNA polymerase principal sigma factor hrdB OS=Stre... [more]
HRDB_STRCO1.074e-1245.07RNA polymerase principal sigma factor hrdB OS=Stre... [more]
RPOD_RICTY1.402e-1248.57RNA polymerase sigma factor rpoD OS=Rickettsia typ... [more]
RPOD_RICPR1.402e-1248.57RNA polymerase sigma factor rpoD OS=Rickettsia pro... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_12E04_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12E04-J8-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671680 ID=CX671680; Name=CX671680; organism=Citrus sinensis; type=EST; length=778bp
CTTCATCTCCAACTCACTCAACACTCCCTTCTCTCAAAACCCTTCACCCT
CTCCCCCCTCCATCACTCTCCTCTTCTCCATCTTCTTGCCTAACAAATAC
AATATAAATATTAACTTAGTCACCAATGAAGCACTTGCACTACACCCTGT
CATTGAATCAGCAACTGATGCCGCGGCATTGGCAAGCGCGGCAGTGCGTA
CTGCCAAAGATGCTGTGTCATTTGCTAATGGGGCTGAAGAGGTTTGCTTT
GATGATGGAGAATGTGAGAGTGTGTTGAAAATGATGAGGAGGAGAAGCAG
GAGAAAGAAAAGGACGAAAGAGAGTGATTTTTTGGATAAAGAAAATGGGG
AACTTGATTATAATTTGGTGAAGTGTAAGACGTCTAATTTGTATTTGACC
CCTAGTGAGGAGGCTGAAATTTGTTACTCTCTCAAGGAGGGAGCAAAGCT
GGAAGAAGCTAGAAAAACAGTTGCACAAGCTGAAGAACATGAATCAATCT
CAAAGCAGTTGGCTAAGGCCACAGGGATGAAACAAAGCAAAGTGGATAAG
ATTCTGTGTAAAGAAAGAGAATCGCAAGAGAGGATCATTCGAAGCTATCG
CAGCCTTGTTGTCTCTATAGCCACTGGTTATCAAGGCAAAGGATTAAGCC
TCAAAGATCTCATTCAGGAAGGGAGCATAGGGCTTCTTCGAGGGGCAAAA
AGATTCAATCCAGAGAGAGGATATAAGTTGTCAACTTATGTTTACTGGTG
GATTAAACAAGCTATTATTAGAACCATA
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