CX671680

Overview
NameCX671680
Unique NameCX671680
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length778
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_RICFE (RNA polymerase sigma factor rpoD OS=Rickettsia felis GN=rpoD PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.402e-12
Identity = 34/70 (48.57%), Postives = 47/70 (67.14%), Query Frame = 2
Query:  569 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778
            ++++ +I +   LV+SIA  Y  +GL   DLIQEG+IGL++   +F   RGYK STY  WWI+QAI R I
Sbjct:  381 QAKKDMIEANLRLVISIAKKYANRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRAI 450          
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_RICCN (RNA polymerase sigma factor rpoD OS=Rickettsia conorii GN=rpoD PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.402e-12
Identity = 34/70 (48.57%), Postives = 47/70 (67.14%), Query Frame = 2
Query:  569 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778
            ++++ +I +   LV+SIA  Y  +GL   DLIQEG+IGL++   +F   RGYK STY  WWI+QAI R I
Sbjct:  380 QAKKDMIEANLRLVISIAKKYANRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRAI 449          
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_RICBR (RNA polymerase sigma factor rpoD OS=Rickettsia bellii (strain RML369-C) GN=rpoD PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.402e-12
Identity = 34/70 (48.57%), Postives = 47/70 (67.14%), Query Frame = 2
Query:  569 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778
            ++++ +I +   LV+SIA  Y  +GL   DLIQEG+IGL++   +F   RGYK STY  WWI+QAI R I
Sbjct:  387 QAKKDMIEANLRLVISIAKKYANRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRAI 456          
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_XYLFT (RNA polymerase sigma factor rpoD OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=rpoD PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.832e-12
Identity = 33/73 (45.21%), Postives = 49/73 (67.12%), Query Frame = 2
Query:  560 KERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778
            K  ++++ ++ +   LV+SIA  Y  +GL   DLIQEG+IGL++   +F   RG+K STY  WWI+QAI R+I
Sbjct:  375 KASKAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVCKFEHRRGFKFSTYATWWIRQAITRSI 447          
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_HELPY (RNA polymerase sigma factor rpoD OS=Helicobacter pylori GN=rpoD PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.832e-12
Identity = 37/84 (44.05%), Postives = 54/84 (64.29%), Query Frame = 2
Query:  527 MKQSKVDKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778
            ++Q K  K++     ++ ++ +S   LVVSIA  +  +GL   DLIQEG+IGL++   +F  E+G+K STY  WWIKQAI R I
Sbjct:  419 LEQIKRGKLISDR--AKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYATWWIKQAISRAI 500          
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_HELPJ (RNA polymerase sigma factor rpoD OS=Helicobacter pylori J99 GN=rpoD PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.832e-12
Identity = 37/84 (44.05%), Postives = 54/84 (64.29%), Query Frame = 2
Query:  527 MKQSKVDKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778
            ++Q K  K++     ++ ++ +S   LVVSIA  +  +GL   DLIQEG+IGL++   +F  E+G+K STY  WWIKQAI R I
Sbjct:  429 LEQIKRGKLISDR--AKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYATWWIKQAISRAI 510          
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: HRDD_STRVF (RNA polymerase principal sigma factor hrdD OS=Streptomyces viridifaciens GN=hrdD PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.832e-12
Identity = 41/117 (35.04%), Postives = 66/117 (56.41%), Query Frame = 2
Query:  431 LKEGAKLEEARKTV-AQAEEHESISKQLAKATGMKQSKVDKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778
            L + AK  E  +T+ A     + +  +    T   + ++  ++     +++  IRS   LVV++A  Y   GL L DLIQEG+ GL+R  ++F+  +G+K STY  WWI+QAI R+I
Sbjct:   48 LLDAAKEVELSQTIEAGVFAQQVLDGEEESRTDATREELQALVDAGERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQAITRSI 164          
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_LISMO (RNA polymerase sigma factor rpoD OS=Listeria monocytogenes GN=rpoD PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.124e-12
Identity = 33/70 (47.14%), Postives = 49/70 (70.00%), Query Frame = 2
Query:  569 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778
            E++ R+  +   LVVSIA  Y G+G+   DLIQEG++GL++  ++F+  +G+K STY  WWI+QAI R I
Sbjct:  136 EAKGRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEKFDFNKGFKFSTYATWWIRQAITRAI 205          
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_LISIN (RNA polymerase sigma factor rpoD OS=Listeria innocua GN=rpoD PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.124e-12
Identity = 33/70 (47.14%), Postives = 49/70 (70.00%), Query Frame = 2
Query:  569 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778
            E++ R+  +   LVVSIA  Y G+G+   DLIQEG++GL++  ++F+  +G+K STY  WWI+QAI R I
Sbjct:  136 EAKGRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEKFDFNKGFKFSTYATWWIRQAITRAI 205          
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_STAAW (RNA polymerase sigma factor rpoD OS=Staphylococcus aureus (strain MW2) GN=rpoD PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.081e-12
Identity = 52/163 (31.90%), Postives = 81/163 (49.69%), Query Frame = 2
Query:  326 DFLDKENGELDYNLVKCKTSN---LYLTPSEEAEICYSLKEGAKLEE---------ARKTVAQAEEHESISKQLAKATGMKQSKVDKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778
            DF D+ N   D +LV  K S+     L PS+      S   G K+ +          R  +  A+E   ++K++ +   + +S              R+  +   LVVSIA  Y G+G+   DLIQEG++GL++  ++F+  +G+K STY  WWI+QAI R I
Sbjct:   57 DFFDQLNDN-DISLVNEKDSSDTDEKLNPSD-----LSAPPGVKINDPVRMYLKEIGRVNLLSAQEEIELAKRIEQGDEVAKS--------------RLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFNKGFKFSTYATWWIRQAITRAI 199          
The following BLAST results are available for this feature:
BLAST of CX671680 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
RPOD_RICFE1.402e-1248.57RNA polymerase sigma factor rpoD OS=Rickettsia fel... [more]
RPOD_RICCN1.402e-1248.57RNA polymerase sigma factor rpoD OS=Rickettsia con... [more]
RPOD_RICBR1.402e-1248.57RNA polymerase sigma factor rpoD OS=Rickettsia bel... [more]
RPOD_XYLFT1.832e-1245.21RNA polymerase sigma factor rpoD OS=Xylella fastid... [more]
RPOD_HELPY1.832e-1244.05RNA polymerase sigma factor rpoD OS=Helicobacter p... [more]
RPOD_HELPJ1.832e-1244.05RNA polymerase sigma factor rpoD OS=Helicobacter p... [more]
HRDD_STRVF1.832e-1235.04RNA polymerase principal sigma factor hrdD OS=Stre... [more]
RPOD_LISMO3.124e-1247.14RNA polymerase sigma factor rpoD OS=Listeria monoc... [more]
RPOD_LISIN3.124e-1247.14RNA polymerase sigma factor rpoD OS=Listeria innoc... [more]
RPOD_STAAW4.081e-1231.90RNA polymerase sigma factor rpoD OS=Staphylococcus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_12E04_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12E04-J8-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671680 ID=CX671680; Name=CX671680; organism=Citrus sinensis; type=EST; length=778bp
CTTCATCTCCAACTCACTCAACACTCCCTTCTCTCAAAACCCTTCACCCT
CTCCCCCCTCCATCACTCTCCTCTTCTCCATCTTCTTGCCTAACAAATAC
AATATAAATATTAACTTAGTCACCAATGAAGCACTTGCACTACACCCTGT
CATTGAATCAGCAACTGATGCCGCGGCATTGGCAAGCGCGGCAGTGCGTA
CTGCCAAAGATGCTGTGTCATTTGCTAATGGGGCTGAAGAGGTTTGCTTT
GATGATGGAGAATGTGAGAGTGTGTTGAAAATGATGAGGAGGAGAAGCAG
GAGAAAGAAAAGGACGAAAGAGAGTGATTTTTTGGATAAAGAAAATGGGG
AACTTGATTATAATTTGGTGAAGTGTAAGACGTCTAATTTGTATTTGACC
CCTAGTGAGGAGGCTGAAATTTGTTACTCTCTCAAGGAGGGAGCAAAGCT
GGAAGAAGCTAGAAAAACAGTTGCACAAGCTGAAGAACATGAATCAATCT
CAAAGCAGTTGGCTAAGGCCACAGGGATGAAACAAAGCAAAGTGGATAAG
ATTCTGTGTAAAGAAAGAGAATCGCAAGAGAGGATCATTCGAAGCTATCG
CAGCCTTGTTGTCTCTATAGCCACTGGTTATCAAGGCAAAGGATTAAGCC
TCAAAGATCTCATTCAGGAAGGGAGCATAGGGCTTCTTCGAGGGGCAAAA
AGATTCAATCCAGAGAGAGGATATAAGTTGTCAACTTATGTTTACTGGTG
GATTAAACAAGCTATTATTAGAACCATA
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