CX671680
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_RICFE (RNA polymerase sigma factor rpoD OS=Rickettsia felis GN=rpoD PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.402e-12 Identity = 34/70 (48.57%), Postives = 47/70 (67.14%), Query Frame = 2 Query: 569 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778 ++++ +I + LV+SIA Y +GL DLIQEG+IGL++ +F RGYK STY WWI+QAI R I Sbjct: 381 QAKKDMIEANLRLVISIAKKYANRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRAI 450
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_RICCN (RNA polymerase sigma factor rpoD OS=Rickettsia conorii GN=rpoD PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.402e-12 Identity = 34/70 (48.57%), Postives = 47/70 (67.14%), Query Frame = 2 Query: 569 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778 ++++ +I + LV+SIA Y +GL DLIQEG+IGL++ +F RGYK STY WWI+QAI R I Sbjct: 380 QAKKDMIEANLRLVISIAKKYANRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRAI 449
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_RICBR (RNA polymerase sigma factor rpoD OS=Rickettsia bellii (strain RML369-C) GN=rpoD PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.402e-12 Identity = 34/70 (48.57%), Postives = 47/70 (67.14%), Query Frame = 2 Query: 569 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778 ++++ +I + LV+SIA Y +GL DLIQEG+IGL++ +F RGYK STY WWI+QAI R I Sbjct: 387 QAKKDMIEANLRLVISIAKKYANRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRAI 456
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_XYLFT (RNA polymerase sigma factor rpoD OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=rpoD PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.832e-12 Identity = 33/73 (45.21%), Postives = 49/73 (67.12%), Query Frame = 2 Query: 560 KERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778 K ++++ ++ + LV+SIA Y +GL DLIQEG+IGL++ +F RG+K STY WWI+QAI R+I Sbjct: 375 KASKAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVCKFEHRRGFKFSTYATWWIRQAITRSI 447
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_HELPY (RNA polymerase sigma factor rpoD OS=Helicobacter pylori GN=rpoD PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.832e-12 Identity = 37/84 (44.05%), Postives = 54/84 (64.29%), Query Frame = 2 Query: 527 MKQSKVDKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778 ++Q K K++ ++ ++ +S LVVSIA + +GL DLIQEG+IGL++ +F E+G+K STY WWIKQAI R I Sbjct: 419 LEQIKRGKLISDR--AKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYATWWIKQAISRAI 500
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_HELPJ (RNA polymerase sigma factor rpoD OS=Helicobacter pylori J99 GN=rpoD PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.832e-12 Identity = 37/84 (44.05%), Postives = 54/84 (64.29%), Query Frame = 2 Query: 527 MKQSKVDKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778 ++Q K K++ ++ ++ +S LVVSIA + +GL DLIQEG+IGL++ +F E+G+K STY WWIKQAI R I Sbjct: 429 LEQIKRGKLISDR--AKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYATWWIKQAISRAI 510
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: HRDD_STRVF (RNA polymerase principal sigma factor hrdD OS=Streptomyces viridifaciens GN=hrdD PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.832e-12 Identity = 41/117 (35.04%), Postives = 66/117 (56.41%), Query Frame = 2 Query: 431 LKEGAKLEEARKTV-AQAEEHESISKQLAKATGMKQSKVDKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778 L + AK E +T+ A + + + T + ++ ++ +++ IRS LVV++A Y GL L DLIQEG+ GL+R ++F+ +G+K STY WWI+QAI R+I Sbjct: 48 LLDAAKEVELSQTIEAGVFAQQVLDGEEESRTDATREELQALVDAGERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQAITRSI 164
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_LISMO (RNA polymerase sigma factor rpoD OS=Listeria monocytogenes GN=rpoD PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.124e-12 Identity = 33/70 (47.14%), Postives = 49/70 (70.00%), Query Frame = 2 Query: 569 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778 E++ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K STY WWI+QAI R I Sbjct: 136 EAKGRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEKFDFNKGFKFSTYATWWIRQAITRAI 205
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_LISIN (RNA polymerase sigma factor rpoD OS=Listeria innocua GN=rpoD PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.124e-12 Identity = 33/70 (47.14%), Postives = 49/70 (70.00%), Query Frame = 2 Query: 569 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778 E++ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K STY WWI+QAI R I Sbjct: 136 EAKGRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEKFDFNKGFKFSTYATWWIRQAITRAI 205
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_STAAW (RNA polymerase sigma factor rpoD OS=Staphylococcus aureus (strain MW2) GN=rpoD PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 4.081e-12 Identity = 52/163 (31.90%), Postives = 81/163 (49.69%), Query Frame = 2 Query: 326 DFLDKENGELDYNLVKCKTSN---LYLTPSEEAEICYSLKEGAKLEE---------ARKTVAQAEEHESISKQLAKATGMKQSKVDKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778 DF D+ N D +LV K S+ L PS+ S G K+ + R + A+E ++K++ + + +S R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K STY WWI+QAI R I Sbjct: 57 DFFDQLNDN-DISLVNEKDSSDTDEKLNPSD-----LSAPPGVKINDPVRMYLKEIGRVNLLSAQEEIELAKRIEQGDEVAKS--------------RLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFNKGFKFSTYATWWIRQAITRAI 199 The following BLAST results are available for this feature:
BLAST of CX671680 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 95
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Sequences
The
following sequences are available for this feature:
EST sequence >CX671680 ID=CX671680; Name=CX671680; organism=Citrus sinensis; type=EST; length=778bpback to top |