CX671680 | Citrus Genome Database

Overview


Name	CX671680
Unique Name	CX671680
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	778

Libraries


Library Name	Type
Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_STAAS (RNA polymerase sigma factor rpoD OS=Staphylococcus aureus (strain MSSA476) GN=rpoD PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.081e-12
Identity = 52/163 (31.90%), Postives = 81/163 (49.69%), Query Frame = 2

Query:  326 DFLDKENGELDYNLVKCKTSN---LYLTPSEEAEICYSLKEGAKLEE---------ARKTVAQAEEHESISKQLAKATGMKQSKVDKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778
            DF D+ N   D +LV  K S+     L PS+      S   G K+ +          R  +  A+E   ++K++ +   + +S              R+  +   LVVSIA  Y G+G+   DLIQEG++GL++  ++F+  +G+K STY  WWI+QAI R I
Sbjct:   57 DFFDQLNDN-DISLVNEKDSSDTDEKLNPSD-----LSAPPGVKINDPVRMYLKEIGRVNLLSAQEEIELAKRIEQGDEVAKS--------------RLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFNKGFKFSTYATWWIRQAITRAI 199

[Close]

BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_STAAR (RNA polymerase sigma factor rpoD OS=Staphylococcus aureus (strain MRSA252) GN=rpoD PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.081e-12
Identity = 52/163 (31.90%), Postives = 81/163 (49.69%), Query Frame = 2

Query:  326 DFLDKENGELDYNLVKCKTSN---LYLTPSEEAEICYSLKEGAKLEE---------ARKTVAQAEEHESISKQLAKATGMKQSKVDKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778
            DF D+ N   D +LV  K S+     L PS+      S   G K+ +          R  +  A+E   ++K++ +   + +S              R+  +   LVVSIA  Y G+G+   DLIQEG++GL++  ++F+  +G+K STY  WWI+QAI R I
Sbjct:   57 DFFDQLNDN-DISLVNEKDSSDTDEKLNPSD-----LSAPPGVKINDPVRMYLKEIGRVNLLSAQEEIELAKRIEQGDEVAKS--------------RLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFNKGFKFSTYATWWIRQAITRAI 199

[Close]

BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_STAAN (RNA polymerase sigma factor rpoD OS=Staphylococcus aureus (strain N315) GN=rpoD PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.081e-12
Identity = 52/163 (31.90%), Postives = 81/163 (49.69%), Query Frame = 2

Query:  326 DFLDKENGELDYNLVKCKTSN---LYLTPSEEAEICYSLKEGAKLEE---------ARKTVAQAEEHESISKQLAKATGMKQSKVDKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778
            DF D+ N   D +LV  K S+     L PS+      S   G K+ +          R  +  A+E   ++K++ +   + +S              R+  +   LVVSIA  Y G+G+   DLIQEG++GL++  ++F+  +G+K STY  WWI+QAI R I
Sbjct:   57 DFFDQLNDN-DISLVNEKDSSDTDEKLNPSD-----LSAPPGVKINDPVRMYLKEIGRVNLLSAQEEIELAKRIEQGDEVAKS--------------RLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFNKGFKFSTYATWWIRQAITRAI 199

[Close]

BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_STAAM (RNA polymerase sigma factor rpoD OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=rpoD PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.081e-12
Identity = 52/163 (31.90%), Postives = 81/163 (49.69%), Query Frame = 2

Query:  326 DFLDKENGELDYNLVKCKTSN---LYLTPSEEAEICYSLKEGAKLEE---------ARKTVAQAEEHESISKQLAKATGMKQSKVDKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778
            DF D+ N   D +LV  K S+     L PS+      S   G K+ +          R  +  A+E   ++K++ +   + +S              R+  +   LVVSIA  Y G+G+   DLIQEG++GL++  ++F+  +G+K STY  WWI+QAI R I
Sbjct:   57 DFFDQLNDN-DISLVNEKDSSDTDEKLNPSD-----LSAPPGVKINDPVRMYLKEIGRVNLLSAQEEIELAKRIEQGDEVAKS--------------RLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFNKGFKFSTYATWWIRQAITRAI 199

[Close]

BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_STAAC (RNA polymerase sigma factor rpoD OS=Staphylococcus aureus (strain COL) GN=rpoD PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.081e-12
Identity = 52/163 (31.90%), Postives = 81/163 (49.69%), Query Frame = 2

Query:  326 DFLDKENGELDYNLVKCKTSN---LYLTPSEEAEICYSLKEGAKLEE---------ARKTVAQAEEHESISKQLAKATGMKQSKVDKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778
            DF D+ N   D +LV  K S+     L PS+      S   G K+ +          R  +  A+E   ++K++ +   + +S              R+  +   LVVSIA  Y G+G+   DLIQEG++GL++  ++F+  +G+K STY  WWI+QAI R I
Sbjct:   57 DFFDQLNDN-DISLVNEKDSSDTDEKLNPSD-----LSAPPGVKINDPVRMYLKEIGRVNLLSAQEEIELAKRIEQGDEVAKS--------------RLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFNKGFKFSTYATWWIRQAITRAI 199

[Close]

BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_STAA8 (RNA polymerase sigma factor rpoD OS=Staphylococcus aureus (strain NCTC 8325) GN=rpoD PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.081e-12
Identity = 52/163 (31.90%), Postives = 81/163 (49.69%), Query Frame = 2

Query:  326 DFLDKENGELDYNLVKCKTSN---LYLTPSEEAEICYSLKEGAKLEE---------ARKTVAQAEEHESISKQLAKATGMKQSKVDKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778
            DF D+ N   D +LV  K S+     L PS+      S   G K+ +          R  +  A+E   ++K++ +   + +S              R+  +   LVVSIA  Y G+G+   DLIQEG++GL++  ++F+  +G+K STY  WWI+QAI R I
Sbjct:   57 DFFDQLNDN-DISLVNEKDSSDTDEKLNPSD-----LSAPPGVKINDPVRMYLKEIGRVNLLSAQEEIELAKRIEQGDEVAKS--------------RLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFNKGFKFSTYATWWIRQAITRAI 199

[Close]

BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RP32_CAUCR (RNA polymerase sigma-32 factor OS=Caulobacter crescentus GN=rpoH PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.329e-12
Identity = 27/69 (39.13%), Postives = 50/69 (72.46%), Query Frame = 2

Query:  560 KERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAI 766
            ++ ++  +++ S+  LV  IA GY+G GL + ++I EG++GL++  K+F PE+G++L+TY  WWI+ +I
Sbjct:   44 QDPQAAHKMVTSHLRLVAKIAMGYRGYGLPIGEVISEGNVGLMQAVKKFEPEKGFRLATYAMWWIRASI 112

[Close]

BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RP32_CAUCN (RNA polymerase sigma-32 factor OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=rpoH PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 5.329e-12
Identity = 27/69 (39.13%), Postives = 50/69 (72.46%), Query Frame = 2

Query:  560 KERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAI 766
            ++ ++  +++ S+  LV  IA GY+G GL + ++I EG++GL++  K+F PE+G++L+TY  WWI+ +I
Sbjct:   44 QDPQAAHKMVTSHLRLVAKIAMGYRGYGLPIGEVISEGNVGLMQAVKKFEPEKGFRLATYAMWWIRASI 112

[Close]

BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_STAES (RNA polymerase sigma factor rpoD OS=Staphylococcus epidermidis (strain ATCC 12228) GN=rpoD PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.960e-12
Identity = 32/69 (46.38%), Postives = 48/69 (69.57%), Query Frame = 2

Query:  572 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778
            ++ R+  +   LVVSIA  Y G+G+   DLIQEG++GL++  ++F+  +G+K STY  WWI+QAI R I
Sbjct:  131 AKSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFSKGFKFSTYATWWIRQAITRAI 199

[Close]

BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_STAEQ (RNA polymerase sigma factor rpoD OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=rpoD PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.960e-12
Identity = 32/69 (46.38%), Postives = 48/69 (69.57%), Query Frame = 2

Query:  572 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778
            ++ R+  +   LVVSIA  Y G+G+   DLIQEG++GL++  ++F+  +G+K STY  WWI+QAI R I
Sbjct:  131 AKSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFSKGFKFSTYATWWIRQAITRAI 199

The following BLAST results are available for this feature:

BLAST of CX671680 vs. ExPASy Swiss-Prot

BLAST of CX671680 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95


Match Name	E-value	Identity	Description
RPOD_STAAS	4.081e-12	31.90	RNA polymerase sigma factor rpoD OS=Staphylococcus...	[more]
RPOD_STAAR	4.081e-12	31.90	RNA polymerase sigma factor rpoD OS=Staphylococcus...	[more]
RPOD_STAAN	4.081e-12	31.90	RNA polymerase sigma factor rpoD OS=Staphylococcus...	[more]
RPOD_STAAM	4.081e-12	31.90	RNA polymerase sigma factor rpoD OS=Staphylococcus...	[more]
RPOD_STAAC	4.081e-12	31.90	RNA polymerase sigma factor rpoD OS=Staphylococcus...	[more]
RPOD_STAA8	4.081e-12	31.90	RNA polymerase sigma factor rpoD OS=Staphylococcus...	[more]
RP32_CAUCR	5.329e-12	39.13	RNA polymerase sigma-32 factor OS=Caulobacter cres...	[more]
RP32_CAUCN	5.329e-12	39.13	RNA polymerase sigma-32 factor OS=Caulobacter cres...	[more]
RPOD_STAES	6.960e-12	46.38	RNA polymerase sigma factor rpoD OS=Staphylococcus...	[more]
RPOD_STAEQ	6.960e-12	46.38	RNA polymerase sigma factor rpoD OS=Staphylococcus...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS10_12E04_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12E04-J8-5.g, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX671680 ID=CX671680; Name=CX671680; organism=Citrus sinensis; type=EST; length=778bp
CTTCATCTCCAACTCACTCAACACTCCCTTCTCTCAAAACCCTTCACCCT
CTCCCCCCTCCATCACTCTCCTCTTCTCCATCTTCTTGCCTAACAAATAC
AATATAAATATTAACTTAGTCACCAATGAAGCACTTGCACTACACCCTGT
CATTGAATCAGCAACTGATGCCGCGGCATTGGCAAGCGCGGCAGTGCGTA
CTGCCAAAGATGCTGTGTCATTTGCTAATGGGGCTGAAGAGGTTTGCTTT
GATGATGGAGAATGTGAGAGTGTGTTGAAAATGATGAGGAGGAGAAGCAG
GAGAAAGAAAAGGACGAAAGAGAGTGATTTTTTGGATAAAGAAAATGGGG
AACTTGATTATAATTTGGTGAAGTGTAAGACGTCTAATTTGTATTTGACC
CCTAGTGAGGAGGCTGAAATTTGTTACTCTCTCAAGGAGGGAGCAAAGCT
GGAAGAAGCTAGAAAAACAGTTGCACAAGCTGAAGAACATGAATCAATCT
CAAAGCAGTTGGCTAAGGCCACAGGGATGAAACAAAGCAAAGTGGATAAG
ATTCTGTGTAAAGAAAGAGAATCGCAAGAGAGGATCATTCGAAGCTATCG
CAGCCTTGTTGTCTCTATAGCCACTGGTTATCAAGGCAAAGGATTAAGCC
TCAAAGATCTCATTCAGGAAGGGAGCATAGGGCTTCTTCGAGGGGCAAAA
AGATTCAATCCAGAGAGAGGATATAAGTTGTCAACTTATGTTTACTGGTG
GATTAAACAAGCTATTATTAGAACCATA