CX671678

Overview
NameCX671678
Unique NameCX671678
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671678 vs. ExPASy Swiss-Prot
Match: NBP1B_XENLA (Nuclear cap-binding protein subunit 1-B OS=Xenopus laevis GN=ncbp1-B PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.205e-16
Identity = 55/188 (29.26%), Postives = 101/188 (53.72%), Query Frame = 1
Query:  127 KNLLLKIGDNCPEYGNSDDLKDHIETCFGVIRRELEHSFDDVPHYIINCAEQIPHKIPLYGTLVGLLNLENEDFVKKVVETTQRKFQDALDSGNCDRIRILMRFLTVMMCSKILQPGSLVVVFETLLSSAATTVDEDKGNPSWQARADFYVTCILSCLPWGGAELIEQVPEEIERVMAGLEAYLSIRR 690
            ++L+ ++G+      ++  L+ ++E   GV+  +L +  + +   +   A  +P K+ +Y TLVGLLN  N +F  + VE   R  ++ +     +    L+RFL  ++   ++   S+V +FE   S    T +ED      Q R+D+YV  +LS LPW G EL E+   E++++++ +EAYL  R+
Sbjct:   32 ESLICRVGEK-----STSSLESNLEGLAGVLEADLPNYKNKILRILCFVARLLPEKMTVYTTLVGLLNARNYNFGGEFVEAMIRHLKETIKLNAYNEAIYLVRFLCDLVNCHVIAAPSMVAMFE---SFVGVTQEEDIP----QVRSDWYVYAVLSSLPWVGKELYEKKDVEMDQILSQIEAYLKQRQ 207          
BLAST of CX671678 vs. ExPASy Swiss-Prot
Match: NCBP1_SALSA (Nuclear cap-binding protein subunit 1 OS=Salmo salar GN=ncbp1 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.507e-16
Identity = 55/190 (28.95%), Postives = 101/190 (53.16%), Query Frame = 1
Query:  127 KNLLLKIGDNCPEYGNSDDLKDHIETCFGVIRRELEHSFDDVPHYIINCAEQIPHKIPLYGTLVGLLNLENEDFVKKVVETTQRKFQDALDSGNCDRIRILMRFLTVMMCSKILQPGSLVVVFETLLSSAATTVDEDKGNPSWQARADFYVTCILSCLPWGGAELIEQVPEEIERVMAGLEAYLSIRRHT 696
            ++L+ ++G+      ++  L+ ++E   GV+  +L +  + +   +   A  +P K+ +Y TLVGLLN  N +F  + VE   R+ ++ L +        L+RFL  ++   ++   S+V +FE  +S    T +ED      Q R+D++V  +LS LPW G EL E+   E++R++  ++ YL  R  T
Sbjct:   32 ESLICRVGEK-----STSSLESNLEGLAGVLEADLPNYKNKILRILCAVARLLPEKLTVYTTLVGLLNARNYNFGGEFVEAMIRQLKETLKANLYTDALYLVRFLCDLVNCHVIAAPSMVAMFENFVS---VTQEEDVP----QVRSDWFVYAVLSSLPWVGKELDEKKDVEMDRLLNQIDGYLKRRLKT 209          
BLAST of CX671678 vs. ExPASy Swiss-Prot
Match: NCBP1_DROSE (Nuclear cap-binding protein subunit 1 OS=Drosophila sechellia GN=Cbp80 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.064e-15
Identity = 51/201 (25.37%), Postives = 100/201 (49.75%), Query Frame = 1
Query:  127 KNLLLKIGDNCPEYGNSDDLKDHIETCFGVIRRELEHSFDDVPHYIINCAEQIPHKIPLYGTLVGLLNLENEDFVKKVVETTQRKFQDALDSGNCDRIRILMRFLTVMMCSKILQPGSLVVVFETLLSSAATTVDEDKGNPSWQARADFYVTCILSCLPWGGAELIEQVPEEIERVMAGLEAYLSIRRHTSDTGLSFFEED 729
            ++L+L++G+      ++  ++ ++E    V+  +L      +   + +CA ++P K  +Y TLVGLLN +N  F  + V+   + F+++L     D  R  +RFL  ++   ++   SL+ + +T+       +D    +   Q R D++V  +LS LPW G +L E+    +E ++  +E YL+ R       L  +  D
Sbjct:   35 ESLILRVGER-----STSSVESNLEGLVSVLEADLGTFRLKILRILSDCAVRMPEKCTVYTTLVGLLNAKNYKFGGEFVDHMVKTFKESLKMCRWDAARYSLRFLADLVNCHVISATSLLQLLDTM-------IDVSNEDTVPQVRRDWFVFAVLSTLPWVGRDLYEKKESALESLLLRIEVYLNKRSKKHHNALRVWSSD 223          
BLAST of CX671678 vs. ExPASy Swiss-Prot
Match: NCBP1_DROPS (Nuclear cap-binding protein subunit 1 OS=Drosophila pseudoobscura pseudoobscura GN=Cbp80 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.064e-15
Identity = 51/201 (25.37%), Postives = 100/201 (49.75%), Query Frame = 1
Query:  127 KNLLLKIGDNCPEYGNSDDLKDHIETCFGVIRRELEHSFDDVPHYIINCAEQIPHKIPLYGTLVGLLNLENEDFVKKVVETTQRKFQDALDSGNCDRIRILMRFLTVMMCSKILQPGSLVVVFETLLSSAATTVDEDKGNPSWQARADFYVTCILSCLPWGGAELIEQVPEEIERVMAGLEAYLSIRRHTSDTGLSFFEED 729
            ++L+L++G+      ++  ++ ++E    V+  +L      +   + +CA ++P K  +Y TLVGLLN +N  F  + V+   + F+++L     D  R  +RFL  ++   ++   SL+ + +T+       +D    +   Q R D++V  +LS LPW G +L E+    +E ++  +E YL+ R       L  +  D
Sbjct:   35 ESLILRVGER-----STSSVESNLEGLVSVLEADLGTFRLKILRILSDCAVRMPEKCTVYTTLVGLLNAKNYKFGGEFVDHMVKTFKESLKMCRWDAARYSLRFLADLVNCHVISATSLLQLLDTM-------IDVSNEDTVPQVRRDWFVFAVLSTLPWVGRDLYEKKESALESLLLRIEVYLNKRSKKHHNALRVWSSD 223          
BLAST of CX671678 vs. ExPASy Swiss-Prot
Match: NCBP1_DROPE (Nuclear cap-binding protein subunit 1 OS=Drosophila persimilis GN=Cbp80 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.064e-15
Identity = 51/201 (25.37%), Postives = 100/201 (49.75%), Query Frame = 1
Query:  127 KNLLLKIGDNCPEYGNSDDLKDHIETCFGVIRRELEHSFDDVPHYIINCAEQIPHKIPLYGTLVGLLNLENEDFVKKVVETTQRKFQDALDSGNCDRIRILMRFLTVMMCSKILQPGSLVVVFETLLSSAATTVDEDKGNPSWQARADFYVTCILSCLPWGGAELIEQVPEEIERVMAGLEAYLSIRRHTSDTGLSFFEED 729
            ++L+L++G+      ++  ++ ++E    V+  +L      +   + +CA ++P K  +Y TLVGLLN +N  F  + V+   + F+++L     D  R  +RFL  ++   ++   SL+ + +T+       +D    +   Q R D++V  +LS LPW G +L E+    +E ++  +E YL+ R       L  +  D
Sbjct:   35 ESLILRVGER-----STSSVESNLEGLVSVLEADLGTFRLKILRILSDCAVRMPEKCTVYTTLVGLLNAKNYKFGGEFVDHMVKTFKESLKMCRWDAARYSLRFLADLVNCHVISATSLLQLLDTM-------IDVSNEDTVPQVRRDWFVFAVLSTLPWVGRDLYEKKESALESLLLRIEVYLNKRSKKHHNALRVWSSD 223          
BLAST of CX671678 vs. ExPASy Swiss-Prot
Match: NCBP1_DROME (Nuclear cap-binding protein subunit 1 OS=Drosophila melanogaster GN=Cbp80 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.064e-15
Identity = 51/201 (25.37%), Postives = 100/201 (49.75%), Query Frame = 1
Query:  127 KNLLLKIGDNCPEYGNSDDLKDHIETCFGVIRRELEHSFDDVPHYIINCAEQIPHKIPLYGTLVGLLNLENEDFVKKVVETTQRKFQDALDSGNCDRIRILMRFLTVMMCSKILQPGSLVVVFETLLSSAATTVDEDKGNPSWQARADFYVTCILSCLPWGGAELIEQVPEEIERVMAGLEAYLSIRRHTSDTGLSFFEED 729
            ++L+L++G+      ++  ++ ++E    V+  +L      +   + +CA ++P K  +Y TLVGLLN +N  F  + V+   + F+++L     D  R  +RFL  ++   ++   SL+ + +T+       +D    +   Q R D++V  +LS LPW G +L E+    +E ++  +E YL+ R       L  +  D
Sbjct:   35 ESLILRVGER-----STSSVESNLEGLVSVLEADLGTFRLKILRILSDCAVRMPEKCTVYTTLVGLLNAKNYKFGGEFVDHMVKTFKESLKMCRWDAARYSLRFLADLVNCHVISATSLLQLLDTM-------IDVSNEDTVPQVRRDWFVFAVLSTLPWVGRDLYEKKESALESLLLRIEVYLNKRSKKHHNALRVWSSD 223          
BLAST of CX671678 vs. ExPASy Swiss-Prot
Match: NCBP1_DROER (Nuclear cap-binding protein subunit 1 OS=Drosophila erecta GN=Cbp80 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.064e-15
Identity = 51/201 (25.37%), Postives = 100/201 (49.75%), Query Frame = 1
Query:  127 KNLLLKIGDNCPEYGNSDDLKDHIETCFGVIRRELEHSFDDVPHYIINCAEQIPHKIPLYGTLVGLLNLENEDFVKKVVETTQRKFQDALDSGNCDRIRILMRFLTVMMCSKILQPGSLVVVFETLLSSAATTVDEDKGNPSWQARADFYVTCILSCLPWGGAELIEQVPEEIERVMAGLEAYLSIRRHTSDTGLSFFEED 729
            ++L+L++G+      ++  ++ ++E    V+  +L      +   + +CA ++P K  +Y TLVGLLN +N  F  + V+   + F+++L     D  R  +RFL  ++   ++   SL+ + +T+       +D    +   Q R D++V  +LS LPW G +L E+    +E ++  +E YL+ R       L  +  D
Sbjct:   35 ESLILRVGER-----STSSVESNLEGLVSVLEADLGTFRLKILRILSDCAVRMPEKCTVYTTLVGLLNAKNYKFGGEFVDHMVKTFKESLKMCRWDAARYSLRFLADLVNCHVISATSLLQLLDTM-------IDVSNEDTVPQVRRDWFVFAVLSTLPWVGRDLYEKKESALESLLLRIEVYLNKRSKKHHNALRVWSSD 223          
BLAST of CX671678 vs. ExPASy Swiss-Prot
Match: NCBP1_DROYA (Nuclear cap-binding protein subunit 1 OS=Drosophila yakuba GN=Cbp80 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.614e-15
Identity = 51/201 (25.37%), Postives = 100/201 (49.75%), Query Frame = 1
Query:  127 KNLLLKIGDNCPEYGNSDDLKDHIETCFGVIRRELEHSFDDVPHYIINCAEQIPHKIPLYGTLVGLLNLENEDFVKKVVETTQRKFQDALDSGNCDRIRILMRFLTVMMCSKILQPGSLVVVFETLLSSAATTVDEDKGNPSWQARADFYVTCILSCLPWGGAELIEQVPEEIERVMAGLEAYLSIRRHTSDTGLSFFEED 729
            ++L+L++G+      ++  ++ ++E    V+  +L      +   + +CA ++P K  +Y TLVGLLN +N  F  + V+   + F+++L     D  R  +RFL  ++   ++   SL+ + +T+       +D    +   Q R D++V  +LS LPW G +L E+    +E ++  +E YL+ R       L  +  D
Sbjct:   35 ESLILRVGER-----STSSVESNLEGLVSVLEADLGTFRLKILRILSDCAVRMPEKCTVYTTLVGLLNAKNYKFGGEFVDHMVKTFKESLKLCRWDAARYSLRFLADLVNCHVISATSLLQLLDTM-------IDVSNEDTVPQVRRDWFVFAVLSTLPWVGRDLYEKKESALESLLLRIEVYLNKRSKKHHNALRVWSSD 223          
BLAST of CX671678 vs. ExPASy Swiss-Prot
Match: NCBP1_DROWI (Nuclear cap-binding protein subunit 1 OS=Drosophila willistoni GN=Cbp80 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.614e-15
Identity = 51/201 (25.37%), Postives = 100/201 (49.75%), Query Frame = 1
Query:  127 KNLLLKIGDNCPEYGNSDDLKDHIETCFGVIRRELEHSFDDVPHYIINCAEQIPHKIPLYGTLVGLLNLENEDFVKKVVETTQRKFQDALDSGNCDRIRILMRFLTVMMCSKILQPGSLVVVFETLLSSAATTVDEDKGNPSWQARADFYVTCILSCLPWGGAELIEQVPEEIERVMAGLEAYLSIRRHTSDTGLSFFEED 729
            ++L+L++G+      ++  ++ ++E    V+  +L      +   + +CA ++P K  +Y TLVGLLN +N  F  + V+   + F+++L     D  R  +RFL  ++   ++   SL+ + +T+       +D    +   Q R D++V  +LS LPW G +L E+    +E ++  +E YL+ R       L  +  D
Sbjct:   35 ESLILRVGER-----STSSVESNLEGLVSVLEADLGTFRLKILRILSDCAVRMPEKCTVYTTLVGLLNAKNYKFGGEFVDHMVKTFKESLKLCRWDAARYSLRFLADLVNCHVISATSLLQLLDTM-------IDVSNEDTVPQVRRDWFVFAVLSTLPWVGRDLYEKKESALESLLLRIEVYLNKRSKKHHNALRVWSSD 223          
BLAST of CX671678 vs. ExPASy Swiss-Prot
Match: NCBP1_DROVI (Nuclear cap-binding protein subunit 1 OS=Drosophila virilis GN=Cbp80 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.614e-15
Identity = 51/201 (25.37%), Postives = 100/201 (49.75%), Query Frame = 1
Query:  127 KNLLLKIGDNCPEYGNSDDLKDHIETCFGVIRRELEHSFDDVPHYIINCAEQIPHKIPLYGTLVGLLNLENEDFVKKVVETTQRKFQDALDSGNCDRIRILMRFLTVMMCSKILQPGSLVVVFETLLSSAATTVDEDKGNPSWQARADFYVTCILSCLPWGGAELIEQVPEEIERVMAGLEAYLSIRRHTSDTGLSFFEED 729
            ++L+L++G+      ++  ++ ++E    V+  +L      +   + +CA ++P K  +Y TLVGLLN +N  F  + V+   + F+++L     D  R  +RFL  ++   ++   SL+ + +T+       +D    +   Q R D++V  +LS LPW G +L E+    +E ++  +E YL+ R       L  +  D
Sbjct:   35 ESLILRVGER-----STSSVESNLEGLVSVLEADLGTFRLKILRILSDCAVRMPEKCTVYTTLVGLLNAKNYKFGGEFVDYMVKTFKESLKLCRWDAARYSLRFLADLVNCHVISATSLLQLLDTI-------IDVSNEDTVPQVRRDWFVFAVLSTLPWVGRDLYEKKESALESLLLRIEVYLNKRSKKHHNALRVWSSD 223          
The following BLAST results are available for this feature:
BLAST of CX671678 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
NBP1B_XENLA1.205e-1629.26Nuclear cap-binding protein subunit 1-B OS=Xenopus... [more]
NCBP1_SALSA3.507e-1628.95Nuclear cap-binding protein subunit 1 OS=Salmo sal... [more]
NCBP1_DROSE5.064e-1525.37Nuclear cap-binding protein subunit 1 OS=Drosophil... [more]
NCBP1_DROPS5.064e-1525.37Nuclear cap-binding protein subunit 1 OS=Drosophil... [more]
NCBP1_DROPE5.064e-1525.37Nuclear cap-binding protein subunit 1 OS=Drosophil... [more]
NCBP1_DROME5.064e-1525.37Nuclear cap-binding protein subunit 1 OS=Drosophil... [more]
NCBP1_DROER5.064e-1525.37Nuclear cap-binding protein subunit 1 OS=Drosophil... [more]
NCBP1_DROYA6.614e-1525.37Nuclear cap-binding protein subunit 1 OS=Drosophil... [more]
NCBP1_DROWI6.614e-1525.37Nuclear cap-binding protein subunit 1 OS=Drosophil... [more]
NCBP1_DROVI6.614e-1525.37Nuclear cap-binding protein subunit 1 OS=Drosophil... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_12E03_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12E03-J6-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671678 ID=CX671678; Name=CX671678; organism=Citrus sinensis; type=EST; length=765bp
GTTCAAGTTAATTGGAATCCAATTTGCCACTAAACCCTGCAAATCCCCTT
CTTCTTACTAAACTGCTGGCTCTTCCTCTGCTTCTGCTTCTCTCACGGAA
CAAGAGATTAAGAAATGAGCAGCTGGAAGAACCTTCTGCTTAAAATCGGG
GACAATTGTCCGGAGTACGGCAACTCCGACGACTTGAAGGATCACATTGA
AACATGCTTCGGCGTAATTCGGCGAGAACTCGAGCACTCTTTTGACGATG
TTCCACATTATATTATTAATTGTGCTGAGCAAATTCCACACAAGATTCCT
TTATATGGGACATTGGTTGGCTTGCTGAACTTGGAAAATGAGGACTTTGT
TAAAAAAGTTGTGGAGACCACTCAAAGAAAATTCCAGGATGCCTTAGACT
CTGGAAACTGCGACCGCATTCGTATTTTGATGCGATTTTTGACTGTTATG
ATGTGTAGCAAAATTCTCCAGCCTGGTTCTCTGGTGGTGGTCTTTGAAAC
TTTATTGTCATCAGCTGCCACAACAGTGGATGAGGACAAAGGAAATCCTT
CCTGGCAAGCACGTGCTGACTTTTATGTAACTTGCATTTTGTCTTGTCTC
CCATGGGGAGGAGCAGAACTCATTGAGCAAGTTCCTGAGGAAATTGAGAG
AGTCATGGCTGGTTTGGAAGCCTACTTGAGCATTAGAAGGCATACTTCTG
ACACCGGTCTGTCTTTCTTTGAGGAAGATGATGAATCTGGGAAAGGTCTT
GTTGAAAAGGATTTC
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