CX671678
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX671678 vs. ExPASy Swiss-Prot
Match: NBP1B_XENLA (Nuclear cap-binding protein subunit 1-B OS=Xenopus laevis GN=ncbp1-B PE=2 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.205e-16 Identity = 55/188 (29.26%), Postives = 101/188 (53.72%), Query Frame = 1 Query: 127 KNLLLKIGDNCPEYGNSDDLKDHIETCFGVIRRELEHSFDDVPHYIINCAEQIPHKIPLYGTLVGLLNLENEDFVKKVVETTQRKFQDALDSGNCDRIRILMRFLTVMMCSKILQPGSLVVVFETLLSSAATTVDEDKGNPSWQARADFYVTCILSCLPWGGAELIEQVPEEIERVMAGLEAYLSIRR 690 ++L+ ++G+ ++ L+ ++E GV+ +L + + + + A +P K+ +Y TLVGLLN N +F + VE R ++ + + L+RFL ++ ++ S+V +FE S T +ED Q R+D+YV +LS LPW G EL E+ E++++++ +EAYL R+ Sbjct: 32 ESLICRVGEK-----STSSLESNLEGLAGVLEADLPNYKNKILRILCFVARLLPEKMTVYTTLVGLLNARNYNFGGEFVEAMIRHLKETIKLNAYNEAIYLVRFLCDLVNCHVIAAPSMVAMFE---SFVGVTQEEDIP----QVRSDWYVYAVLSSLPWVGKELYEKKDVEMDQILSQIEAYLKQRQ 207
BLAST of CX671678 vs. ExPASy Swiss-Prot
Match: NCBP1_SALSA (Nuclear cap-binding protein subunit 1 OS=Salmo salar GN=ncbp1 PE=2 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 3.507e-16 Identity = 55/190 (28.95%), Postives = 101/190 (53.16%), Query Frame = 1 Query: 127 KNLLLKIGDNCPEYGNSDDLKDHIETCFGVIRRELEHSFDDVPHYIINCAEQIPHKIPLYGTLVGLLNLENEDFVKKVVETTQRKFQDALDSGNCDRIRILMRFLTVMMCSKILQPGSLVVVFETLLSSAATTVDEDKGNPSWQARADFYVTCILSCLPWGGAELIEQVPEEIERVMAGLEAYLSIRRHT 696 ++L+ ++G+ ++ L+ ++E GV+ +L + + + + A +P K+ +Y TLVGLLN N +F + VE R+ ++ L + L+RFL ++ ++ S+V +FE +S T +ED Q R+D++V +LS LPW G EL E+ E++R++ ++ YL R T Sbjct: 32 ESLICRVGEK-----STSSLESNLEGLAGVLEADLPNYKNKILRILCAVARLLPEKLTVYTTLVGLLNARNYNFGGEFVEAMIRQLKETLKANLYTDALYLVRFLCDLVNCHVIAAPSMVAMFENFVS---VTQEEDVP----QVRSDWFVYAVLSSLPWVGKELDEKKDVEMDRLLNQIDGYLKRRLKT 209
BLAST of CX671678 vs. ExPASy Swiss-Prot
Match: NCBP1_DROSE (Nuclear cap-binding protein subunit 1 OS=Drosophila sechellia GN=Cbp80 PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 5.064e-15 Identity = 51/201 (25.37%), Postives = 100/201 (49.75%), Query Frame = 1 Query: 127 KNLLLKIGDNCPEYGNSDDLKDHIETCFGVIRRELEHSFDDVPHYIINCAEQIPHKIPLYGTLVGLLNLENEDFVKKVVETTQRKFQDALDSGNCDRIRILMRFLTVMMCSKILQPGSLVVVFETLLSSAATTVDEDKGNPSWQARADFYVTCILSCLPWGGAELIEQVPEEIERVMAGLEAYLSIRRHTSDTGLSFFEED 729 ++L+L++G+ ++ ++ ++E V+ +L + + +CA ++P K +Y TLVGLLN +N F + V+ + F+++L D R +RFL ++ ++ SL+ + +T+ +D + Q R D++V +LS LPW G +L E+ +E ++ +E YL+ R L + D Sbjct: 35 ESLILRVGER-----STSSVESNLEGLVSVLEADLGTFRLKILRILSDCAVRMPEKCTVYTTLVGLLNAKNYKFGGEFVDHMVKTFKESLKMCRWDAARYSLRFLADLVNCHVISATSLLQLLDTM-------IDVSNEDTVPQVRRDWFVFAVLSTLPWVGRDLYEKKESALESLLLRIEVYLNKRSKKHHNALRVWSSD 223
BLAST of CX671678 vs. ExPASy Swiss-Prot
Match: NCBP1_DROPS (Nuclear cap-binding protein subunit 1 OS=Drosophila pseudoobscura pseudoobscura GN=Cbp80 PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 5.064e-15 Identity = 51/201 (25.37%), Postives = 100/201 (49.75%), Query Frame = 1 Query: 127 KNLLLKIGDNCPEYGNSDDLKDHIETCFGVIRRELEHSFDDVPHYIINCAEQIPHKIPLYGTLVGLLNLENEDFVKKVVETTQRKFQDALDSGNCDRIRILMRFLTVMMCSKILQPGSLVVVFETLLSSAATTVDEDKGNPSWQARADFYVTCILSCLPWGGAELIEQVPEEIERVMAGLEAYLSIRRHTSDTGLSFFEED 729 ++L+L++G+ ++ ++ ++E V+ +L + + +CA ++P K +Y TLVGLLN +N F + V+ + F+++L D R +RFL ++ ++ SL+ + +T+ +D + Q R D++V +LS LPW G +L E+ +E ++ +E YL+ R L + D Sbjct: 35 ESLILRVGER-----STSSVESNLEGLVSVLEADLGTFRLKILRILSDCAVRMPEKCTVYTTLVGLLNAKNYKFGGEFVDHMVKTFKESLKMCRWDAARYSLRFLADLVNCHVISATSLLQLLDTM-------IDVSNEDTVPQVRRDWFVFAVLSTLPWVGRDLYEKKESALESLLLRIEVYLNKRSKKHHNALRVWSSD 223
BLAST of CX671678 vs. ExPASy Swiss-Prot
Match: NCBP1_DROPE (Nuclear cap-binding protein subunit 1 OS=Drosophila persimilis GN=Cbp80 PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 5.064e-15 Identity = 51/201 (25.37%), Postives = 100/201 (49.75%), Query Frame = 1 Query: 127 KNLLLKIGDNCPEYGNSDDLKDHIETCFGVIRRELEHSFDDVPHYIINCAEQIPHKIPLYGTLVGLLNLENEDFVKKVVETTQRKFQDALDSGNCDRIRILMRFLTVMMCSKILQPGSLVVVFETLLSSAATTVDEDKGNPSWQARADFYVTCILSCLPWGGAELIEQVPEEIERVMAGLEAYLSIRRHTSDTGLSFFEED 729 ++L+L++G+ ++ ++ ++E V+ +L + + +CA ++P K +Y TLVGLLN +N F + V+ + F+++L D R +RFL ++ ++ SL+ + +T+ +D + Q R D++V +LS LPW G +L E+ +E ++ +E YL+ R L + D Sbjct: 35 ESLILRVGER-----STSSVESNLEGLVSVLEADLGTFRLKILRILSDCAVRMPEKCTVYTTLVGLLNAKNYKFGGEFVDHMVKTFKESLKMCRWDAARYSLRFLADLVNCHVISATSLLQLLDTM-------IDVSNEDTVPQVRRDWFVFAVLSTLPWVGRDLYEKKESALESLLLRIEVYLNKRSKKHHNALRVWSSD 223
BLAST of CX671678 vs. ExPASy Swiss-Prot
Match: NCBP1_DROME (Nuclear cap-binding protein subunit 1 OS=Drosophila melanogaster GN=Cbp80 PE=1 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 5.064e-15 Identity = 51/201 (25.37%), Postives = 100/201 (49.75%), Query Frame = 1 Query: 127 KNLLLKIGDNCPEYGNSDDLKDHIETCFGVIRRELEHSFDDVPHYIINCAEQIPHKIPLYGTLVGLLNLENEDFVKKVVETTQRKFQDALDSGNCDRIRILMRFLTVMMCSKILQPGSLVVVFETLLSSAATTVDEDKGNPSWQARADFYVTCILSCLPWGGAELIEQVPEEIERVMAGLEAYLSIRRHTSDTGLSFFEED 729 ++L+L++G+ ++ ++ ++E V+ +L + + +CA ++P K +Y TLVGLLN +N F + V+ + F+++L D R +RFL ++ ++ SL+ + +T+ +D + Q R D++V +LS LPW G +L E+ +E ++ +E YL+ R L + D Sbjct: 35 ESLILRVGER-----STSSVESNLEGLVSVLEADLGTFRLKILRILSDCAVRMPEKCTVYTTLVGLLNAKNYKFGGEFVDHMVKTFKESLKMCRWDAARYSLRFLADLVNCHVISATSLLQLLDTM-------IDVSNEDTVPQVRRDWFVFAVLSTLPWVGRDLYEKKESALESLLLRIEVYLNKRSKKHHNALRVWSSD 223
BLAST of CX671678 vs. ExPASy Swiss-Prot
Match: NCBP1_DROER (Nuclear cap-binding protein subunit 1 OS=Drosophila erecta GN=Cbp80 PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 5.064e-15 Identity = 51/201 (25.37%), Postives = 100/201 (49.75%), Query Frame = 1 Query: 127 KNLLLKIGDNCPEYGNSDDLKDHIETCFGVIRRELEHSFDDVPHYIINCAEQIPHKIPLYGTLVGLLNLENEDFVKKVVETTQRKFQDALDSGNCDRIRILMRFLTVMMCSKILQPGSLVVVFETLLSSAATTVDEDKGNPSWQARADFYVTCILSCLPWGGAELIEQVPEEIERVMAGLEAYLSIRRHTSDTGLSFFEED 729 ++L+L++G+ ++ ++ ++E V+ +L + + +CA ++P K +Y TLVGLLN +N F + V+ + F+++L D R +RFL ++ ++ SL+ + +T+ +D + Q R D++V +LS LPW G +L E+ +E ++ +E YL+ R L + D Sbjct: 35 ESLILRVGER-----STSSVESNLEGLVSVLEADLGTFRLKILRILSDCAVRMPEKCTVYTTLVGLLNAKNYKFGGEFVDHMVKTFKESLKMCRWDAARYSLRFLADLVNCHVISATSLLQLLDTM-------IDVSNEDTVPQVRRDWFVFAVLSTLPWVGRDLYEKKESALESLLLRIEVYLNKRSKKHHNALRVWSSD 223
BLAST of CX671678 vs. ExPASy Swiss-Prot
Match: NCBP1_DROYA (Nuclear cap-binding protein subunit 1 OS=Drosophila yakuba GN=Cbp80 PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 6.614e-15 Identity = 51/201 (25.37%), Postives = 100/201 (49.75%), Query Frame = 1 Query: 127 KNLLLKIGDNCPEYGNSDDLKDHIETCFGVIRRELEHSFDDVPHYIINCAEQIPHKIPLYGTLVGLLNLENEDFVKKVVETTQRKFQDALDSGNCDRIRILMRFLTVMMCSKILQPGSLVVVFETLLSSAATTVDEDKGNPSWQARADFYVTCILSCLPWGGAELIEQVPEEIERVMAGLEAYLSIRRHTSDTGLSFFEED 729 ++L+L++G+ ++ ++ ++E V+ +L + + +CA ++P K +Y TLVGLLN +N F + V+ + F+++L D R +RFL ++ ++ SL+ + +T+ +D + Q R D++V +LS LPW G +L E+ +E ++ +E YL+ R L + D Sbjct: 35 ESLILRVGER-----STSSVESNLEGLVSVLEADLGTFRLKILRILSDCAVRMPEKCTVYTTLVGLLNAKNYKFGGEFVDHMVKTFKESLKLCRWDAARYSLRFLADLVNCHVISATSLLQLLDTM-------IDVSNEDTVPQVRRDWFVFAVLSTLPWVGRDLYEKKESALESLLLRIEVYLNKRSKKHHNALRVWSSD 223
BLAST of CX671678 vs. ExPASy Swiss-Prot
Match: NCBP1_DROWI (Nuclear cap-binding protein subunit 1 OS=Drosophila willistoni GN=Cbp80 PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 6.614e-15 Identity = 51/201 (25.37%), Postives = 100/201 (49.75%), Query Frame = 1 Query: 127 KNLLLKIGDNCPEYGNSDDLKDHIETCFGVIRRELEHSFDDVPHYIINCAEQIPHKIPLYGTLVGLLNLENEDFVKKVVETTQRKFQDALDSGNCDRIRILMRFLTVMMCSKILQPGSLVVVFETLLSSAATTVDEDKGNPSWQARADFYVTCILSCLPWGGAELIEQVPEEIERVMAGLEAYLSIRRHTSDTGLSFFEED 729 ++L+L++G+ ++ ++ ++E V+ +L + + +CA ++P K +Y TLVGLLN +N F + V+ + F+++L D R +RFL ++ ++ SL+ + +T+ +D + Q R D++V +LS LPW G +L E+ +E ++ +E YL+ R L + D Sbjct: 35 ESLILRVGER-----STSSVESNLEGLVSVLEADLGTFRLKILRILSDCAVRMPEKCTVYTTLVGLLNAKNYKFGGEFVDHMVKTFKESLKLCRWDAARYSLRFLADLVNCHVISATSLLQLLDTM-------IDVSNEDTVPQVRRDWFVFAVLSTLPWVGRDLYEKKESALESLLLRIEVYLNKRSKKHHNALRVWSSD 223
BLAST of CX671678 vs. ExPASy Swiss-Prot
Match: NCBP1_DROVI (Nuclear cap-binding protein subunit 1 OS=Drosophila virilis GN=Cbp80 PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 6.614e-15 Identity = 51/201 (25.37%), Postives = 100/201 (49.75%), Query Frame = 1 Query: 127 KNLLLKIGDNCPEYGNSDDLKDHIETCFGVIRRELEHSFDDVPHYIINCAEQIPHKIPLYGTLVGLLNLENEDFVKKVVETTQRKFQDALDSGNCDRIRILMRFLTVMMCSKILQPGSLVVVFETLLSSAATTVDEDKGNPSWQARADFYVTCILSCLPWGGAELIEQVPEEIERVMAGLEAYLSIRRHTSDTGLSFFEED 729 ++L+L++G+ ++ ++ ++E V+ +L + + +CA ++P K +Y TLVGLLN +N F + V+ + F+++L D R +RFL ++ ++ SL+ + +T+ +D + Q R D++V +LS LPW G +L E+ +E ++ +E YL+ R L + D Sbjct: 35 ESLILRVGER-----STSSVESNLEGLVSVLEADLGTFRLKILRILSDCAVRMPEKCTVYTTLVGLLNAKNYKFGGEFVDYMVKTFKESLKLCRWDAARYSLRFLADLVNCHVISATSLLQLLDTI-------IDVSNEDTVPQVRRDWFVFAVLSTLPWVGRDLYEKKESALESLLLRIEVYLNKRSKKHHNALRVWSSD 223 The following BLAST results are available for this feature:
BLAST of CX671678 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 26
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX671678 ID=CX671678; Name=CX671678; organism=Citrus sinensis; type=EST; length=765bpback to top |