CX671282

Overview
NameCX671282
Unique NameCX671282
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length832
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8493 contig Csv1_Contig8493:138..969. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671282 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.975e-48
Identity = 99/186 (53.23%), Postives = 129/186 (69.35%), Query Frame = 1
Query:  289 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSD 831
            E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+ WAMLGA G + PE  ++ G   G EAVWFK G+ +     L+Y G    ++   + A+ A ++VL+G  E YRI  G   ++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+D
Sbjct:    5 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAD 189          
BLAST of CX671282 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.511e-47
Identity = 110/205 (53.66%), Postives = 132/205 (64.39%), Query Frame = 1
Query:  235 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSD 831
            WYGPDR    P+ L   SE  P YLTGE PGDYG+D   +S  P+ F+K +  E+IH RWAMLGA G + PE   K G   G EAVWFK GA +     L+Y G    I    + A+ A ++VL+G  E YR+  G   E  D L PGG FDPLGLA DP+  A LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL  HL+D
Sbjct:   50 WYGPDR----PKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGLKFG-EAVWFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGTLGEGLDPLLPGGAFDPLGLADDPEACAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLAD 249          
BLAST of CX671282 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.849e-46
Identity = 103/206 (50.00%), Postives = 129/206 (62.62%), Query Frame = 1
Query:  232 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF-NKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSD 831
            ++YGPD       G   + + P   TGE PGDYG+D  GLS  P+ F +Y+  ELIHAR  +LGA G + PE   ++ G   G  A+WFK GA +     LNY G    I   N+V  +  ++VL+G  E YR+  G   E  D L+PG  FDPLGLA DPD FA LKVKEIKNGRLAMFA LGFF+QA VTG+GP+ENL  HL++
Sbjct:   56 QFYGPDAT----SGWDLQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYRVNGGPAGEGLDPLYPGEAFDPLGLADDPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENLTDHLAN 257          
BLAST of CX671282 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 6.347e-46
Identity = 103/205 (50.24%), Postives = 130/205 (63.41%), Query Frame = 1
Query:  235 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITN--GLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSD 831
            WYGPDR  +L       ++ P YL GE PGDYG+D  GLS  P+ F+K +A E+IH RWAMLGA G I PE   K+      E VWFK G+ +     L+Y G    +    + AV+  ++VL+G  E +RI    G+   + L+PGG  FDPLGLA DP  FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL  HL +
Sbjct:   47 WYGPDRVKYLGPF---SAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDN 248          
BLAST of CX671282 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.414e-45
Identity = 104/206 (50.49%), Postives = 132/206 (64.08%), Query Frame = 1
Query:  235 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLD---LEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSD 831
            WYGPDR  +L       ++ P YL GE PGDYG+D  GLS  P+ F++ +A E+IH RWAMLGA G + PE   K+      E VWFK G+ +     L+Y G    +    + AV+  +++L+G  E +RI NGLD     + L+PGG  FDPLGLA DP  FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL  HL D
Sbjct:   50 WYGPDRVKYLGPF---SAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRI-NGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDD 251          
BLAST of CX671282 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 3.150e-45
Identity = 100/204 (49.02%), Postives = 132/204 (64.71%), Query Frame = 1
Query:  235 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSD 831
            WYG DR ++L  G L  S  P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWA+    G + PE   + G   G E VWFK G+ +     L++ G    ++   + A+ A ++VL+G  E Y +  G   ++ D L+ GG FDPLGL  DP++FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+D
Sbjct:   48 WYGADRVLYL--GPLSGSP-PSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVIHCRWAIAVGLGCVFPELLARNGVKFG-EGVWFKAGSQIFSEGGLSHPGNPSLVHAQSILAIWACQVVLMGAVEGYHVAGGRLGEVVDPLYLGGSFDPLGLGDDPERFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLTD 247          
BLAST of CX671282 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 5.940e-44
Identity = 100/204 (49.02%), Postives = 129/204 (63.24%), Query Frame = 1
Query:  235 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSD 831
            WYGPDR  +L        E P YLTGE          GLS  P+ F+K +  E+IH+RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    I+   + A+ A +++L+G  E YRI  G   ++ D ++PGG FDPLGLA DP+  A LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+D
Sbjct:   48 WYGPDRVKYLGPF---SGEAPSYLTGEF--------HGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEALAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAD 239          
BLAST of CX671282 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.729e-38
Identity = 90/184 (48.91%), Postives = 118/184 (64.13%), Query Frame = 1
Query:  289 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL--VFAV-IAEIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHL 825
            E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+R AM  A G I PE  +  G   G EAVWFK GA +     L+Y G    ++   + A+   +++L+G  E YRI  G   ++ D L+PG  FD LGLA+D + FA LKVKE+KNGRLAMF+M GFF+QA V+ +  +ENLA HL
Sbjct:   68 EWPSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAVEGYRIARGPLGEVTDPLYPGS-FDSLGLAEDTEAFAELKVKELKNGRLAMFSMFGFFVQAIVSRKDRLENLADHL 249          
BLAST of CX671282 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.373e-32
Identity = 80/183 (43.72%), Postives = 106/183 (57.92%), Query Frame = 1
Query:  295 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGA-LLLDGNTLNYFGKNIPINLVFAVIA-EIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQ--AYVTGEGPVENLAKHLSD 831
            P YL G  PGD+G+D  GL + P +  +Y+  ELIH RWAML   G I+PEA             W K      + G    Y G+ +P   +  ++A E + +   E+ R     D E K +PGG FDPLG +KDP +F  LKVKEIKNGRLA+ A++GF +Q  AY+ G GP+ENLA HL+D
Sbjct:   56 PSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGLGN--------WVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEK-DSEKKKYPGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYL-GTGPLENLATHLAD 228          
BLAST of CX671282 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.812e-32
Identity = 81/181 (44.75%), Postives = 106/181 (58.56%), Query Frame = 1
Query:  295 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHLSD 831
            P +L G  PGD+G+DP GL+  P++F +++  E+ H RWAML   G ++PEA      N      W    A L DG    Y G  +P  NL   +  E + +  AE  R T   D E K +PGG FDPLG +KDP +F  LK+KEIKNGRLAM A +GF + Q+   G GP+ENLA HL+D
Sbjct:   55 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGL--GNWVKAQEW----AALPDGQA-TYLGNPVPWGNLPTILAIEFLAIAFAEQQR-TMEKDPEKKKYPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLAD 227          
The following BLAST results are available for this feature:
BLAST of CX671282 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
CB22_CUCSA3.975e-4853.23Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB21_PINTH1.511e-4753.66Chlorophyll a-b binding protein type I, chloroplas... [more]
CB2_DUNSA2.849e-4650.00Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB23_SOLLC6.347e-4650.24Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB23_HORVU1.414e-4550.49Chlorophyll a-b binding protein of LHCII type III,... [more]
CB48_MAIZE3.150e-4549.02Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB22_SOYBN5.940e-4449.02Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB2_MALDO3.729e-3848.91Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB11_SOLLC1.373e-3243.72Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB121_HORVU6.812e-3244.75Chlorophyll a-b binding protein 1B-21, chloroplast... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_10B03_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-10B03-C6-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671282 ID=CX671282; Name=CX671282; organism=Citrus sinensis; type=EST; length=832bp
AACACTCTGAAGATGGCTTCATTGGCAGCATCGTCCACTCCTGCTGCCTC
CATTGGAGCTAAGGAGATGCTTGGCAACCCTCTCAATGTCAGCAGTGCTG
TTAGGACTTCAGCTCCAGGTGCATCAAACCCTTCTACTTTCAAGCCCGTT
GCTCTCTTCTCCAAGAAGAAAGCCGCCCCTCCTGCCAAGTCTAAGCCCGT
CGCCGTCTCCCCCGTTAACGAAGAGCTCGCCAAGTGGTATGGTCCTGACC
GAAGAATTTTCTTGCCCGAGGGTCTCTTGGACAGATCTGAGATCCCTGAG
TACTTGACCGGAGAAGTTCCCGGAGACTATGGTTACGATCCTTTTGGTCT
CAGCAAGAAACCAGACGACTTCAGCAAATATCAGGCATATGAATTGATTC
ATGCCAGATGGGCCATGCTTGGTGCTGCTGGTTTCATCATTCCTGAAGCC
TTTAACAAGTTTGGTGCTAACTGTGGTCCTGAAGCTGTCTGGTTCAAGAC
TGGAGCTCTACTTCTTGATGGAAACACATTGAACTACTTCGGAAAGAACA
TCCCAATCAACCTTGTTTTTGCTGTCATTGCTGAGATTGTTCTTGTAGGT
GGTGCTGAATATTATAGAATCACCAACGGTTTGGATTTGGAGGACAAGCT
TCACCCAGGTGGTCCATTTGACCCACTGGGATTAGCAAAGGATCCTGACC
AATTTGCATTGCTAAAAGTGAAGGAGATCAAGAATGGAAGACTTGCAATG
TTTGCCATGCTTGGTTTCTTTCTCCAAGCTTATGTCACAGGTGAAGGTCC
AGTTGAGAACCTTGCTAAACATCTCAGTGATC
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