CX671282

Overview
NameCX671282
Unique NameCX671282
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length832
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8493 contig Csv1_Contig8493:138..969. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671282 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 8.066e-25
Identity = 56/85 (65.88%), Postives = 69/85 (81.18%), Query Frame = 1
Query:  583 EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSD 831
            ++VL+G  E YRI  G   ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+D
Sbjct:   15 QVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAD 99          
BLAST of CX671282 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 8.066e-25
Identity = 56/85 (65.88%), Postives = 69/85 (81.18%), Query Frame = 1
Query:  583 EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSD 831
            ++VL+G  E YRI  G   ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+D
Sbjct:  164 QVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAD 248          
BLAST of CX671282 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 8.066e-25
Identity = 56/85 (65.88%), Postives = 69/85 (81.18%), Query Frame = 1
Query:  583 EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSD 831
            ++VL+G  E YRI  G   ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+D
Sbjct:  164 QVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAD 248          
BLAST of CX671282 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3)

HSP 1 Score: 114.39 bits (285), Expect = 8.066e-25
Identity = 76/221 (34.39%), Postives = 109/221 (49.32%), Query Frame = 1
Query:  295 PEYLTGEVPGDYGYDPFGLSKK------------------------------PDDFS---------------KYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFAL-LKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAK 819
            PE+L G +PGD G+DP GLSK                               PD+ S               +++  ELIH RWAML   G ++ EA             W + G + LDG   +Y G ++P ++   +  E++LVGGAE+YR  +  + E + +PGG FDPL LA + ++ A  LK  EIK+ RLAM +  G+ +QA  TGEG + +LAK
Sbjct:   60 PEWLDGSLPGDRGFDPLGLSKPSEFVVIGVDENDQNAAKNNKGSVEAIVQATPDEVSSENRLAPYSEVFGLARFRECELIHGRWAMLACLGALVAEATTGVS--------WVEAGKVELDG--ASYAGLSLPFSITQLIWIEVILVGGAEFYR-NSETNPEKRCYPGGVFDPLKLASEDEERAFRLKTAEIKHARLAMVSFFGYGVQALSTGEGALGSLAK 269          
BLAST of CX671282 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.053e-24
Identity = 69/192 (35.94%), Postives = 100/192 (52.08%), Query Frame = 1
Query:  295 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-------------GLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSD 831
            P YLTG +PGD G+DP GL++ P++   +   EL++ RWAMLG AG ++PE F   G    P+  W+  G          YF  +  + ++  +++  V +    +  I N              L   +  +PGG F+PL  A   +     K KEI NGRLAM A LGF +Q  VTG+GP +NL +H+SD
Sbjct:   63 PGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPK--WYAAG-------KEEYFASSSTLFVIEFILSHYVEI--RRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGIFNPLNFAPTLE----AKEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISD 239          
BLAST of CX671282 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.376e-24
Identity = 55/85 (64.71%), Postives = 69/85 (81.18%), Query Frame = 1
Query:  583 EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSD 831
            ++VL+G  E YRI  G   ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA H++D
Sbjct:  166 QVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIAD 250          
BLAST of CX671282 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.376e-24
Identity = 55/85 (64.71%), Postives = 69/85 (81.18%), Query Frame = 1
Query:  583 EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSD 831
            ++VL+G  E YRI  G   ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA H++D
Sbjct:  166 QVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIAD 250          
BLAST of CX671282 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.780e-23
Identity = 58/97 (59.79%), Postives = 68/97 (70.10%), Query Frame = 1
Query:  559 NLVFAVIAEIVLVGGAEYYRITN------GLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSD 831
            +L+  +  +++L+G  E YR  N      G DL D+L+PGGPFDPLGLA DPD F  LKVKEIKNGRLAM  MLGF+ QA VTGEGPVEN   HL D
Sbjct:   10 SLLAILATQVLLMGAVEGYRAGNTAPGQFGEDL-DRLYPGGPFDPLGLADDPDTFPELKVKEIKNGRLAMSGMLGFYAQAIVTGEGPVENWLYHLQD 105          
BLAST of CX671282 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.893e-22
Identity = 52/86 (60.47%), Postives = 64/86 (74.42%), Query Frame = 1
Query:  583 EIVLVGGAEYYRITNGLDL---EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSD 831
            +++L+G  E YR+     L   ED L+PGG FDPL    DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+D
Sbjct:   22 QVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAD 107          
BLAST of CX671282 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.614e-19
Identity = 62/186 (33.33%), Postives = 89/186 (47.85%), Query Frame = 1
Query:  286 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLE----DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSD 831
            +E P  LTGE P D G+DP  L+  PD +++ +  E+ H R AML   G I+PE   K          WF+ G   +DG  L +                + +    EY+R   G + +    D+ +PG  FDPL L  D       +  E+KNGRLA+ A+ G   Q   TGE P+ NL+ HL++
Sbjct:  194 AEPPALLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGCIVPELLGK--------GAWFEAGD-SVDGLKLGFI--------------TMAIAAPTEYWRGQGGFNWQKGELDRSYPG--FDPLNLTTD-----YTRAAEVKNGRLALTAVAGLTAQYLATGESPLANLSAHLAN 349          

HSP 2 Score: 90.8929 bits (224), Expect = 9.550e-18
Identity = 64/178 (35.96%), Postives = 87/178 (48.88%), Query Frame = 1
Query:  295 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYR-----ITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 813
            P YLTGE  GD G+DP GL+  P  F + Q  E+ H R +ML   G ++PE              WF+    + D    N           FAV+A + +V   EY+R     + N  +  D+ +PG  FDPL L  +       K  EIKNGRLAM  M G  +Q++VTG+ P+ NL
Sbjct:  381 PRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELLG--------NGAWFQ----IWDKVDFNR----------FAVVA-LQVVAPLEYWRGNGGFLWNDEETVDQSYPG--FDPLNLTTE-----YTKEAEIKNGRLAMNGMFGLEVQSHVTGKSPINNL 528          
The following BLAST results are available for this feature:
BLAST of CX671282 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
CB2D_SOLLC8.066e-2565.88Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC8.066e-2565.88Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC8.066e-2565.88Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB29_CHLRE8.066e-2534.39Chlorophyll a-b binding protein CP29 OS=Chlamydomo... [more]
CB24_PEA1.053e-2435.94Chlorophyll a-b binding protein P4, chloroplastic ... [more]
CB2F_SOLLC1.376e-2464.71Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC1.376e-2464.71Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB21_EUGGR5.780e-2359.79Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB21_RAPSA4.893e-2260.47Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
LH18_EUGGR6.614e-1933.33Light-harvesting complex I LH38 proteins (Fragment... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_10B03_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-10B03-C6-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671282 ID=CX671282; Name=CX671282; organism=Citrus sinensis; type=EST; length=832bp
AACACTCTGAAGATGGCTTCATTGGCAGCATCGTCCACTCCTGCTGCCTC
CATTGGAGCTAAGGAGATGCTTGGCAACCCTCTCAATGTCAGCAGTGCTG
TTAGGACTTCAGCTCCAGGTGCATCAAACCCTTCTACTTTCAAGCCCGTT
GCTCTCTTCTCCAAGAAGAAAGCCGCCCCTCCTGCCAAGTCTAAGCCCGT
CGCCGTCTCCCCCGTTAACGAAGAGCTCGCCAAGTGGTATGGTCCTGACC
GAAGAATTTTCTTGCCCGAGGGTCTCTTGGACAGATCTGAGATCCCTGAG
TACTTGACCGGAGAAGTTCCCGGAGACTATGGTTACGATCCTTTTGGTCT
CAGCAAGAAACCAGACGACTTCAGCAAATATCAGGCATATGAATTGATTC
ATGCCAGATGGGCCATGCTTGGTGCTGCTGGTTTCATCATTCCTGAAGCC
TTTAACAAGTTTGGTGCTAACTGTGGTCCTGAAGCTGTCTGGTTCAAGAC
TGGAGCTCTACTTCTTGATGGAAACACATTGAACTACTTCGGAAAGAACA
TCCCAATCAACCTTGTTTTTGCTGTCATTGCTGAGATTGTTCTTGTAGGT
GGTGCTGAATATTATAGAATCACCAACGGTTTGGATTTGGAGGACAAGCT
TCACCCAGGTGGTCCATTTGACCCACTGGGATTAGCAAAGGATCCTGACC
AATTTGCATTGCTAAAAGTGAAGGAGATCAAGAATGGAAGACTTGCAATG
TTTGCCATGCTTGGTTTCTTTCTCCAAGCTTATGTCACAGGTGAAGGTCC
AGTTGAGAACCTTGCTAAACATCTCAGTGATC
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