CX671282
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX671282 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 8.066e-25 Identity = 56/85 (65.88%), Postives = 69/85 (81.18%), Query Frame = 1 Query: 583 EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSD 831 ++VL+G E YRI G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+D Sbjct: 15 QVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAD 99
BLAST of CX671282 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 8.066e-25 Identity = 56/85 (65.88%), Postives = 69/85 (81.18%), Query Frame = 1 Query: 583 EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSD 831 ++VL+G E YRI G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+D Sbjct: 164 QVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAD 248
BLAST of CX671282 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 8.066e-25 Identity = 56/85 (65.88%), Postives = 69/85 (81.18%), Query Frame = 1 Query: 583 EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSD 831 ++VL+G E YRI G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+D Sbjct: 164 QVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAD 248
BLAST of CX671282 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3) HSP 1 Score: 114.39 bits (285), Expect = 8.066e-25 Identity = 76/221 (34.39%), Postives = 109/221 (49.32%), Query Frame = 1 Query: 295 PEYLTGEVPGDYGYDPFGLSKK------------------------------PDDFS---------------KYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFAL-LKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAK 819 PE+L G +PGD G+DP GLSK PD+ S +++ ELIH RWAML G ++ EA W + G + LDG +Y G ++P ++ + E++LVGGAE+YR + + E + +PGG FDPL LA + ++ A LK EIK+ RLAM + G+ +QA TGEG + +LAK Sbjct: 60 PEWLDGSLPGDRGFDPLGLSKPSEFVVIGVDENDQNAAKNNKGSVEAIVQATPDEVSSENRLAPYSEVFGLARFRECELIHGRWAMLACLGALVAEATTGVS--------WVEAGKVELDG--ASYAGLSLPFSITQLIWIEVILVGGAEFYR-NSETNPEKRCYPGGVFDPLKLASEDEERAFRLKTAEIKHARLAMVSFFGYGVQALSTGEGALGSLAK 269
BLAST of CX671282 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 1.053e-24 Identity = 69/192 (35.94%), Postives = 100/192 (52.08%), Query Frame = 1 Query: 295 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-------------GLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSD 831 P YLTG +PGD G+DP GL++ P++ + EL++ RWAMLG AG ++PE F G P+ W+ G YF + + ++ +++ V + + I N L + +PGG F+PL A + K KEI NGRLAM A LGF +Q VTG+GP +NL +H+SD Sbjct: 63 PGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPK--WYAAG-------KEEYFASSSTLFVIEFILSHYVEI--RRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGIFNPLNFAPTLE----AKEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISD 239
BLAST of CX671282 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 1.376e-24 Identity = 55/85 (64.71%), Postives = 69/85 (81.18%), Query Frame = 1 Query: 583 EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSD 831 ++VL+G E YRI G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA H++D Sbjct: 166 QVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIAD 250
BLAST of CX671282 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 1.376e-24 Identity = 55/85 (64.71%), Postives = 69/85 (81.18%), Query Frame = 1 Query: 583 EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSD 831 ++VL+G E YRI G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA H++D Sbjct: 166 QVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIAD 250
BLAST of CX671282 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 5.780e-23 Identity = 58/97 (59.79%), Postives = 68/97 (70.10%), Query Frame = 1 Query: 559 NLVFAVIAEIVLVGGAEYYRITN------GLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSD 831 +L+ + +++L+G E YR N G DL D+L+PGGPFDPLGLA DPD F LKVKEIKNGRLAM MLGF+ QA VTGEGPVEN HL D Sbjct: 10 SLLAILATQVLLMGAVEGYRAGNTAPGQFGEDL-DRLYPGGPFDPLGLADDPDTFPELKVKEIKNGRLAMSGMLGFYAQAIVTGEGPVENWLYHLQD 105
BLAST of CX671282 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 4.893e-22 Identity = 52/86 (60.47%), Postives = 64/86 (74.42%), Query Frame = 1 Query: 583 EIVLVGGAEYYRITNGLDL---EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSD 831 +++L+G E YR+ L ED L+PGG FDPL DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+D Sbjct: 22 QVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAD 107
BLAST of CX671282 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 6.614e-19 Identity = 62/186 (33.33%), Postives = 89/186 (47.85%), Query Frame = 1 Query: 286 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLE----DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSD 831 +E P LTGE P D G+DP L+ PD +++ + E+ H R AML G I+PE K WF+ G +DG L + + + EY+R G + + D+ +PG FDPL L D + E+KNGRLA+ A+ G Q TGE P+ NL+ HL++ Sbjct: 194 AEPPALLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGCIVPELLGK--------GAWFEAGD-SVDGLKLGFI--------------TMAIAAPTEYWRGQGGFNWQKGELDRSYPG--FDPLNLTTD-----YTRAAEVKNGRLALTAVAGLTAQYLATGESPLANLSAHLAN 349 HSP 2 Score: 90.8929 bits (224), Expect = 9.550e-18 Identity = 64/178 (35.96%), Postives = 87/178 (48.88%), Query Frame = 1 Query: 295 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYR-----ITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 813 P YLTGE GD G+DP GL+ P F + Q E+ H R +ML G ++PE WF+ + D N FAV+A + +V EY+R + N + D+ +PG FDPL L + K EIKNGRLAM M G +Q++VTG+ P+ NL Sbjct: 381 PRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELLG--------NGAWFQ----IWDKVDFNR----------FAVVA-LQVVAPLEYWRGNGGFLWNDEETVDQSYPG--FDPLNLTTE-----YTKEAEIKNGRLAMNGMFGLEVQSHVTGKSPINNL 528 The following BLAST results are available for this feature:
BLAST of CX671282 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 82
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Sequences
The
following sequences are available for this feature:
EST sequence >CX671282 ID=CX671282; Name=CX671282; organism=Citrus sinensis; type=EST; length=832bpback to top |