CX671262

Overview
NameCX671262
Unique NameCX671262
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length842
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10980 contig Csv1_Contig10980:124..965. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX671262 vs. ExPASy Swiss-Prot
Match: HS21C_SOLLC (Small heat shock protein, chloroplastic OS=Solanum lycopersicum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.628e-12
Identity = 46/140 (32.86%), Postives = 77/140 (55.00%), Query Frame = -2 
Query:  149 RSLSQVLNFMDQMTESPFF-------SGTRGGLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIR------XXXXXXXXXXESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVP*VKEEERADVFQVKVD 529
            R++ Q+++ MD++ E           SGT G +R  WD  + ++ + +  DMPGL KEDV+VS+E + LVI+                 +   Y +R+ LP+ + + D+IKAE+KNGVL +++P  K E    V  V+++
Sbjct:  100 RTMRQMIDTMDRLFEDTMTFPGRNRASGT-GEIRTPWDIHDDENEIKMRFDMPGLSKEDVKVSVENDMLVIKGEHKKEEDGRDKHSWGRNYSSYDTRLSLPDNVVK-DKIKAELKNGVLFISIP--KTEVEKKVIDVQIN 235
[Close]
BLAST of CX671262 vs. ExPASy Swiss-Prot
Match: HS21C_PEA (Small heat shock protein, chloroplastic OS=Pisum sativum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.918e-11
Identity = 43/134 (32.09%), Postives = 73/134 (54.48%), Query Frame = -2 
Query:  155 RSLSQVLNFMDQMTESPFFSGTR----GGLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRXXXXXXXXXXESVRR-----YTSRIDLPEKLYRTDQIKAEMKNGVLKVTVP*VKEEERADVFQVK 529
            RS+ Q+L+ MD++ E       R    G +R  W+ K+ +  + +  DMPG+ KEDV+VS+E + LVI+          +   R     Y +R+ LP+   + +++KAE+K+GVL +T+P  K E      Q++
Sbjct:  100 RSMRQMLDTMDRIFEDAITIPGRNIGGGEIRVPWEIKDEEHEIRMRFDMPGVSKEDVKVSVEDDVLVIKSDHREENGGEDCWSRKSYSCYDTRLKLPDNCEK-EKVKAELKDGVLYITIPKTKIERTVIDVQIQ 232
The following BLAST results are available for this feature:
BLAST of CX671262 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
HS21C_SOLLC4.628e-1232.86Small heat shock protein, chloroplastic OS=Solanum... [more]
HS21C_PEA3.918e-1132.09Small heat shock protein, chloroplastic OS=Pisum s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_10A03_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-10A03-A6-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671262 ID=CX671262; Name=CX671262; organism=Citrus sinensis; type=EST; length=842bp
TTTTTTTATGCGAAGTAACACAATTATTCAAACTTCGAACACCACCATTT
CAGAACATGTTTGTAACTGTTAGCTCACATAAACTACACAAAATTATTCT
CACTCAATATCCTGGACAGAAAAGCTACTACTAAAAGCCAACTCTTTAAT
CAACCTTCACTTGGAACACATCAGCCCTCTCCTCTTCCTTCACCTAGGGC
ACCGTCACCTTCAGCACACCATTCTTCATCTCTGCCTTGATCTGATCAGT
CCTGTAGAGCTTCTCTGGCAAATCAATCCTGCTGGTGTACCTACGCACGC
TCTCTTCGCCCTCTCCTTCTTTTCCGCCCTCGCCTCTGATCACCAGAGTG
TTCTGCTCCAGAGAGACTCTCACGTCTTCCTTGCCCAGCCCTGGCATGTC
GATGCTGAGGTTCAATGCGTCATCGGTTTCTTTAGCATCCCAGCCTCGGC
GCAGTCCACCACGCGTGCCACTGAAGAAAGGGCTCTCCGTCATCTGATCC
ATGAAGTTCAGGACCTGGCTCAGGCTCCTTGTTGGTGAAAATGGATCAAA
CACATCTGAGAAGAAGTCGTCACGACGGCGAGGGAAAGAGCGAGCGGAAC
GGCGATCAATGTCGAGATCACGGTCGTCTCCGCCGTCATCGTATTGACGA
ACAGCGTTTGTGTTGAAGAACCGAGATGCCGAAGTAGCAGAAGGAGCGAC
GGTGCAGCGTANAGCCCTGGGGATGAGATTAAAAGAAACAAGCCTCTTGA
GAGCAAGAGAGGACGCCATTGAGCCGAATTCTTAAAGAAAGCACAAAACA
ATGCAGAGATTTCAAAATACTTTTTGTGACTGCGGCTGATTT
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