CV712165

Overview
NameCV712165
Unique NameCV712165
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length826
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6640 contig Csv1_Contig6640:67..892. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CV712165 vs. ExPASy Swiss-Prot
Match: MEL26_CAEEL (Protein maternal effect lethal 26 OS=Caenorhabditis elegans GN=mel-26 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.920e-11
Identity = 50/160 (31.25%), Postives = 82/160 (51.25%), Query Frame = -3 
Query:  339 AHKLVLATRSPVFKAQLFGPLKDQ-NTQCIKVEDMEVPVXKALLHFIYWDALPDMEDLVDLSPKWASTLMAQHLLAAADRYALERLKLLCEAKLCEDVAINTVATTLALAEQHHCSQLKAVCLKFI-ASPENLKAVMQTDGFEYLKESCPSVLTELLQYV 812
            AHK VLA RSPVF A L     D+  +  + + DM+  V   ++++IY       +D+ D         MA  LL AAD+Y LE LK  CE  L E++ I    + L + + +   +L+   + +I A P+N   V  T G+E + +  P+++T++   +
Sbjct:  214 AHKAVLAARSPVFNAMLTHQDTDEAKSSMMYINDMDYDVIYEMVYYIYCGRCN--KDITD---------MATALLIAADKYRLEELKSHCEKYLVENINIENACSLLIIGDLYSAPKLRKRAVTYILARPKN---VTGTPGWEDILKGHPNLITDIFSQI 359
The following BLAST results are available for this feature:
BLAST of CV712165 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
MEL26_CAEEL2.920e-1131.25Protein maternal effect lethal 26 OS=Caenorhabditi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_0001A06_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712165 ID=CV712165; Name=CV712165; organism=Citrus sinensis; type=EST; length=826bp
AGTCACTTGCAGGTGCAGCTTAAAATCGATTCACCAGTCTTTTAACTTCC
AGGAACTGCACAGGAAACAAACTTTCAACACCCAGATGTTCAAAAATTGT
AGAAAATATTAATGAACCACTAATGTTATATTTAACAAATAATTTATCAA
CTGTTAGTATAATCCAAAAATGTTTGGACCTAACTTTTTTTTTCCGGGGT
GGTAAAGATAATGGAAGATCAGTCATTCCTTTATCAATGTACCCTCTGCT
TCACCCGCCTCCCATTGACATCACAGCCATCTGGTAATGTCTCGTTCCCA
TGCCCTGAAGCAATGACAGAATGCTCGCCTATTTTGGCCACATATTGTAG
CAGTTCGGTGAGGACAGAAGGGCAACTTTCTTTTAAGTATTCAAACCCAT
CTGTTTGCATCACAGCTTTTAAATTTTCAGGTGATGCAATGAATTTGAGA
CAAACAGCTTTCAGTTGGGAACAGTGATGCTGCTCTGCCAAGGCCAACGT
GGTGGCAACAGTGTTTATAGCAACATCTTCACAGAGCTTAGCCTCACAGA
GTAATTTGAGCCTCTCAAGTGCATACCGGTCTGCTGCAGCAAGAAGATGC
TGAGCCATCAGTGTAGAAGCCCATTTTGGACTCAGATCAACAAGGTCTTC
CATATCTGGCAGAGCATCCCAGTAGATAAAATGCAATAATGCCTTANAAA
CTGGGACTTCCATGTCTTCCACCTTAATGCATTGAGTGTTTTGATCCTTT
AATGGACCAAAAAGTTGTGCCTTGAACACAGGTGAACGTGTAGCAAGTAC
CAACTTGTGGGCAGCAAACCTTTCTC
back to top