GO241389

Overview
NameGO241389
Unique NameGO241389
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5655 contig Csv1_Contig5655:306..917. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GO241389 vs. ExPASy Swiss-Prot
Match: HOX19_ORYSI (Homeobox-leucine zipper protein HOX19 OS=Oryza sativa subsp. indica GN=HOX19 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.502e-15
Identity = 47/99 (47.47%), Postives = 59/99 (59.60%), Query Frame = 2
Query:    8 DFSDDGSQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDLLKRQYEAVKADREALQAQNQKLHA 304
            D  DDGS    KK RL  EQ   LE  F   + L P++K+ LA+ L L+PRQV +WFQNRRAR K KQ E D + LKR  E +  +   LQ + Q+L A
Sbjct:  118 DDDDDGST--RKKLRLTKEQSALLEDRFREHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQRELQELRA 214          
BLAST of GO241389 vs. ExPASy Swiss-Prot
Match: HAT3_ARATH (Homeobox-leucine zipper protein HAT3 OS=Arabidopsis thaliana GN=HAT3 PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.502e-15
Identity = 44/101 (43.56%), Postives = 62/101 (61.39%), Query Frame = 2
Query:    2 EDDFSDDGSQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDLLKRQYEAVKADREALQAQNQKLHA 304
            ++D S +G  +  KK RL+ EQ   LE+ F+  + L P++KM LA+ L L+ RQV +WFQNRRAR K KQ E D + LKR  E +  +   LQ +  +L A
Sbjct:  149 DEDGSGNGDDSSRKKLRLSKEQALVLEETFKEHSTLNPKQKMALAKQLNLRTRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTDENRRLQKEVSELRA 249          
BLAST of GO241389 vs. ExPASy Swiss-Prot
Match: HOX27_ORYSJ (Homeobox-leucine zipper protein HOX27 OS=Oryza sativa subsp. japonica GN=HOX27 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.962e-15
Identity = 45/103 (43.69%), Postives = 64/103 (62.14%), Query Frame = 2
Query:   17 DDGSQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDLLKRQYEAVKADREALQAQNQKLHAEIMALKS 325
            DD   +  KK RL+ EQ   LE++F+  + L P++K+ LA+ L L+PRQV +WFQNRRAR K KQ E D + LKR         E L  +N++LH E+  L++
Sbjct:  166 DDEGASARKKLRLSKEQSAFLEESFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCC-------ETLTEENRRLHKELAELRA 261          
BLAST of GO241389 vs. ExPASy Swiss-Prot
Match: HOX27_ORYSI (Homeobox-leucine zipper protein HOX27 OS=Oryza sativa subsp. indica GN=HOX27 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 1.962e-15
Identity = 45/103 (43.69%), Postives = 64/103 (62.14%), Query Frame = 2
Query:   17 DDGSQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDLLKRQYEAVKADREALQAQNQKLHAEIMALKS 325
            DD   +  KK RL+ EQ   LE++F+  + L P++K+ LA+ L L+PRQV +WFQNRRAR K KQ E D + LKR         E L  +N++LH E+  L++
Sbjct:  166 DDEGASARKKLRLSKEQSAFLEESFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCC-------ETLTEENRRLHKELAELRA 261          
BLAST of GO241389 vs. ExPASy Swiss-Prot
Match: HOX11_ORYSJ (Homeobox-leucine zipper protein HOX11 OS=Oryza sativa subsp. japonica GN=HOX11 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.962e-15
Identity = 49/103 (47.57%), Postives = 65/103 (63.11%), Query Frame = 2
Query:   17 DDGSQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDLLKRQYEAVKADREALQAQNQKLHAEIMALKS 325
            DDG  A  KK RL+ EQ   LE++F+  + L P++K+ LA+ L L+PRQV +WFQNRRAR K KQ E D + LKR  E +  +   L    QK  AE+ ALK+
Sbjct:  170 DDGGSA-RKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRL----QKELAELRALKT 267          
BLAST of GO241389 vs. ExPASy Swiss-Prot
Match: HOX11_ORYSI (Homeobox-leucine zipper protein HOX11 OS=Oryza sativa subsp. indica GN=HOX11 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.962e-15
Identity = 49/103 (47.57%), Postives = 65/103 (63.11%), Query Frame = 2
Query:   17 DDGSQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDLLKRQYEAVKADREALQAQNQKLHAEIMALKS 325
            DDG  A  KK RL+ EQ   LE++F+  + L P++K+ LA+ L L+PRQV +WFQNRRAR K KQ E D + LKR  E +  +   L    QK  AE+ ALK+
Sbjct:   83 DDGGSA-RKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRL----QKELAELRALKT 180          
BLAST of GO241389 vs. ExPASy Swiss-Prot
Match: HOX15_ORYSJ (Homeobox-leucine zipper protein HOX15 OS=Oryza sativa subsp. japonica GN=HOX15 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.562e-15
Identity = 46/103 (44.66%), Postives = 62/103 (60.19%), Query Frame = 2
Query:   17 DDGSQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDLLKRQYEAVKADREALQAQNQKLHAEIMALKS 325
            DD      KK RL+ EQ   LE  F+  + L P++K+ LA+ L L+PRQV +WFQNRRAR K KQ E D +LLKR         E L  +N++LH E+  L++
Sbjct:   86 DDEGCNSRKKLRLSKEQSALLEDRFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKRCC-------ETLTEENRRLHRELQQLRA 181          
BLAST of GO241389 vs. ExPASy Swiss-Prot
Match: HOX15_ORYSI (Homeobox-leucine zipper protein HOX15 OS=Oryza sativa subsp. indica GN=HOX15 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.562e-15
Identity = 46/103 (44.66%), Postives = 62/103 (60.19%), Query Frame = 2
Query:   17 DDGSQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDLLKRQYEAVKADREALQAQNQKLHAEIMALKS 325
            DD      KK RL+ EQ   LE  F+  + L P++K+ LA+ L L+PRQV +WFQNRRAR K KQ E D +LLKR         E L  +N++LH E+  L++
Sbjct:   86 DDEGCNSRKKLRLSKEQSALLEDRFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKRCC-------ETLTEENRRLHRELQQLRA 181          
BLAST of GO241389 vs. ExPASy Swiss-Prot
Match: HOX28_ORYSJ (Homeobox-leucine zipper protein HOX28 OS=Oryza sativa subsp. japonica GN=HOX28 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.346e-15
Identity = 45/112 (40.18%), Postives = 67/112 (59.82%), Query Frame = 2
Query:    2 EDDFSDDGSQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDLLKRQYEAVKADREALQAQNQKLHAEIMALKSREVT 337
            +D   D G     KK RL+ +Q   LE+ F+  + L P++K+ LA++L L+PRQV +WFQNRRAR K KQ E D + LKR  + +  D       N++LH E+  L++ + T
Sbjct:   81 DDAGCDVGGGGARKKLRLSKDQAAVLEECFKTHHTLTPKQKVALAKSLNLRPRQVEVWFQNRRARTKLKQTEVDCEHLKRWCDQLADD-------NRRLHKELAELRALKAT 185          
BLAST of GO241389 vs. ExPASy Swiss-Prot
Match: HOX28_ORYSI (Homeobox-leucine zipper protein HOX28 OS=Oryza sativa subsp. indica GN=HOX28 PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 3.346e-15
Identity = 45/112 (40.18%), Postives = 67/112 (59.82%), Query Frame = 2
Query:    2 EDDFSDDGSQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDLLKRQYEAVKADREALQAQNQKLHAEIMALKSREVT 337
            +D   D G     KK RL+ +Q   LE+ F+  + L P++K+ LA++L L+PRQV +WFQNRRAR K KQ E D + LKR  + +  D       N++LH E+  L++ + T
Sbjct:   81 DDAGCDVGGGGARKKLRLSKDQAAVLEECFKTHHTLTPKQKVALAKSLNLRPRQVEVWFQNRRARTKLKQTEVDCEHLKRWCDQLADD-------NRRLHKELAELRALKAT 185          
The following BLAST results are available for this feature:
BLAST of GO241389 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
HOX19_ORYSI1.502e-1547.47Homeobox-leucine zipper protein HOX19 OS=Oryza sat... [more]
HAT3_ARATH1.502e-1543.56Homeobox-leucine zipper protein HAT3 OS=Arabidopsi... [more]
HOX27_ORYSJ1.962e-1543.69Homeobox-leucine zipper protein HOX27 OS=Oryza sat... [more]
HOX27_ORYSI1.962e-1543.69Homeobox-leucine zipper protein HOX27 OS=Oryza sat... [more]
HOX11_ORYSJ1.962e-1547.57Homeobox-leucine zipper protein HOX11 OS=Oryza sat... [more]
HOX11_ORYSI1.962e-1547.57Homeobox-leucine zipper protein HOX11 OS=Oryza sat... [more]
HOX15_ORYSJ2.562e-1544.66Homeobox-leucine zipper protein HOX15 OS=Oryza sat... [more]
HOX15_ORYSI2.562e-1544.66Homeobox-leucine zipper protein HOX15 OS=Oryza sat... [more]
HOX28_ORYSJ3.346e-1540.18Homeobox-leucine zipper protein HOX28 OS=Oryza sat... [more]
HOX28_ORYSI3.346e-1540.18Homeobox-leucine zipper protein HOX28 OS=Oryza sat... [more]

Pages

back to top
Properties
Property NameValue
Genbank description37 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 119 5, mRNA sequence.