DT214601

Overview
NameDT214601
Unique NameDT214601
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length862
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6531 contig Csv1_Contig6531:1..862. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DT214601 vs. ExPASy Swiss-Prot
Match: ODO2_DICDI (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial OS=Dictyostelium discoideum GN=odhB PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.954e-21
Identity = 63/154 (40.91%), Postives = 89/154 (57.79%), Query Frame = -2
Query:  400 NSSWADEYIRQFKNVNINVAVQTENGLYVPVIRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAIINPPQSGILAVGSAEKRVVPGLGPDQYKFSSFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL 861
            N+S  +  I    NVNINVAV    GL VPVIR+ +    + I +E+ +L+  A++++L  +D  GGTFT++N GG FG      IINPPQS IL + + + R  P +   Q      M + L+ DHR+IDG     +LK  K  +ENPE +LL
Sbjct:  287 NASVEENDIVYHNNVNINVAVSAPRGLVVPVIRNCENLSFADIEKEIGRLSGLARNDALAIEDSIGGTFTISN-GGVFGSMFGTPIINPPQSAILGMHAIKDR--PYVVNGQVVVRPIMYLALTYDHRIIDGREAVTFLKKIKDVLENPERILL 437          
BLAST of DT214601 vs. ExPASy Swiss-Prot
Match: ODO2_BARQU (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Bartonella quintana GN=sucB PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.954e-21
Identity = 59/144 (40.97%), Postives = 87/144 (60.42%), Query Frame = -2
Query:  400 FKN-VNINVAVQTENGLYVPVIRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAIINPPQSGILAVGSAEKRVVPGLGPDQYKFSSFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL 828
            +KN VN  +AV T+ GL VPV+RDAD+  L+ I +E+ +L + A+D  L   D +GGTFT+TN GG +G      I+N PQSGIL + + ++R +   G  Q      M + LS DHR++DG     +L   K  +E+PE ++L
Sbjct:  268 YKNYVNAGIAVGTDKGLVVPVVRDADQMSLAEIEKEISRLGRLARDGKLAVSDMQGGTFTITN-GGVYGSLMSTPILNAPQSGILGMHAIKERAMVVGG--QIIICPMMYLALSYDHRIVDGQEAVTFLVRVKESLEDPERLVL 408          
BLAST of DT214601 vs. ExPASy Swiss-Prot
Match: ODO2_BACSU (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Bacillus subtilis GN=odhB PE=3 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.954e-21
Identity = 55/142 (38.73%), Postives = 86/142 (60.56%), Query Frame = -2
Query:  400 KNVNINVAVQTENGLYVPVIRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAIINPPQSGILAVGSAEKRVVPGLGPDQYKFSSFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL 825
            K  +I +AV  + GL VPV+RDAD+   + I +E+ +LA+KA++N L   + +GG+FT+TN GG FG      I+N PQ GIL +   + R V  +  ++++    M + LS DHR++DG     +L   K  +E+PE +LL
Sbjct:  276 KFYDIGIAVAADEGLVVPVVRDADRLTFAGIEKEIGELAKKARNNKLTLSELQGGSFTITN-GGTFGSLMSTPILNSPQVGILGMHKIQLRPV-AIDEERFENRPMMYIALSYDHRIVDGKEAVGFLVTIKNLLEDPEQLLL 415          
BLAST of DT214601 vs. ExPASy Swiss-Prot
Match: Y1564_DICDI (Pyruvate dehydrogenase complex subunit homolog DDB_G0271564, mitochondrial OS=Dictyostelium discoideum GN=pdhX PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.334e-21
Identity = 55/108 (50.93%), Postives = 74/108 (68.52%), Query Frame = -2
Query:  544 NSSWADEYIRQFKN--VNINVAVQTENGLYVPVIRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAIINPPQSGILAVGSAEKRVVP 861
            NS W+DE+     N  V+I+ AV T+ GL  P+I + DKK L  I+ E +QLA KA+D  LKP+++ GGTF+V+NL G FGI  F AIIN PQ+GILA+G+  K + P
Sbjct:  200 NSKWSDEHGEAILNPTVDISFAVSTDRGLITPIITNTDKKQLLAISNESKQLALKARDGKLKPEEFIGGTFSVSNL-GMFGITSFNAIINYPQAGILAIGTGRKVLRP 306          
BLAST of DT214601 vs. ExPASy Swiss-Prot
Match: ODO2_STAES (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus epidermidis (strain ATCC 12228) GN=odhB PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.354e-21
Identity = 62/149 (41.61%), Postives = 83/149 (55.70%), Query Frame = -2
Query:  400 DEYIRQFKNVNINVAVQTENGLYVPVIRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAIINPPQSGILAVGSAEKRVVPGLGPDQYKFSSFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL 846
            D   +QF   +I +AV T++GL VP +RD DKK  + I +E+  LA KA+D  L   D   G+FT+TN GG FG      IIN  Q+ IL + S   R +  +  D  +    M + LS DHR+IDG     +LK  K  IENPE +LL
Sbjct:  274 DMITKQF--YDIGIAVSTDDGLLVPFVRDCDKKNFAEIEQEIANLAVKARDKKLGLDDMVNGSFTITN-GGIFGSMMSTPIINGNQAAILGMHSIITRPI-AVDKDTIENRPMMYIALSYDHRIIDGKEAVGFLKTIKELIENPEDLLL 418          
BLAST of DT214601 vs. ExPASy Swiss-Prot
Match: ODO2_STAEQ (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=odhB PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.354e-21
Identity = 62/149 (41.61%), Postives = 83/149 (55.70%), Query Frame = -2
Query:  400 DEYIRQFKNVNINVAVQTENGLYVPVIRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAIINPPQSGILAVGSAEKRVVPGLGPDQYKFSSFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL 846
            D   +QF   +I +AV T++GL VP +RD DKK  + I +E+  LA KA+D  L   D   G+FT+TN GG FG      IIN  Q+ IL + S   R +  +  D  +    M + LS DHR+IDG     +LK  K  IENPE +LL
Sbjct:  274 DMITKQF--YDIGIAVSTDDGLLVPFVRDCDKKNFAEIEQEIANLAVKARDKKLGLDDMVNGSFTITN-GGIFGSMMSTPIINGNQAAILGMHSIITRPI-AVDKDTIENRPMMYIALSYDHRIIDGKEAVGFLKTIKELIENPEDLLL 418          
BLAST of DT214601 vs. ExPASy Swiss-Prot
Match: ODO2_HAEIN (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Haemophilus influenzae GN=sucB PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.267e-20
Identity = 56/139 (40.29%), Postives = 81/139 (58.27%), Query Frame = -2
Query:  400 NINVAVQTENGLYVPVIRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAIINPPQSGILAVGSAEKRVVPGLGPDQYKFSSFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL 816
            +I++AV T  GL  PV+RD DK  ++ I ++++ LA+K +D  L  +D  GG FT+TN GG FG      IINPPQS IL + + ++R +   G  Q      M + LS DHR+IDG     +L   K  +E+P  +LL
Sbjct:  272 DISIAVSTPRGLVTPVLRDCDKLSMAEIEKQIKALAEKGRDGKLTVEDLTGGNFTITN-GGVFGSLMSTPIINPPQSAILGMHAIKERPIALNG--QVVIRPMMYLALSYDHRLIDGRESVGFLVTIKELLEDPTRLLL 407          
BLAST of DT214601 vs. ExPASy Swiss-Prot
Match: ODO2_STAAW (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus aureus (strain MW2) GN=odhB PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.161e-20
Identity = 59/139 (42.45%), Postives = 78/139 (56.12%), Query Frame = -2
Query:  400 NINVAVQTENGLYVPVIRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAIINPPQSGILAVGSAEKRVVPGLGPDQYKFSSFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL 816
            +I VAV T++GL VP +RD DKK  + I  E+  LA KA++  L   D   G+FT+TN GG FG      IIN  Q+ IL + S   R +  +  D  +    M + LS DHR+IDG     +LK  K  IENPE +LL
Sbjct:  284 DIGVAVSTDDGLLVPFVRDCDKKNFAEIEAEIANLAVKAREKKLGLDDMVNGSFTITN-GGIFGSMMSTPIINGNQAAILGMHSIITRPI-AIDQDTIENRPMMYIALSYDHRIIDGKEAVGFLKTIKELIENPEDLLL 420          
BLAST of DT214601 vs. ExPASy Swiss-Prot
Match: ODO2_STAAS (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus aureus (strain MSSA476) GN=odhB PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.161e-20
Identity = 59/139 (42.45%), Postives = 78/139 (56.12%), Query Frame = -2
Query:  400 NINVAVQTENGLYVPVIRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAIINPPQSGILAVGSAEKRVVPGLGPDQYKFSSFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL 816
            +I VAV T++GL VP +RD DKK  + I  E+  LA KA++  L   D   G+FT+TN GG FG      IIN  Q+ IL + S   R +  +  D  +    M + LS DHR+IDG     +LK  K  IENPE +LL
Sbjct:  284 DIGVAVSTDDGLLVPFVRDCDKKNFAEIEAEIANLAVKAREKKLGLDDMVNGSFTITN-GGIFGSMMSTPIINGNQAAILGMHSIITRPI-AIDQDTIENRPMMYIALSYDHRIIDGKEAVGFLKTIKELIENPEDLLL 420          
BLAST of DT214601 vs. ExPASy Swiss-Prot
Match: ODO2_STAAR (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus aureus (strain MRSA252) GN=odhB PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.161e-20
Identity = 59/139 (42.45%), Postives = 78/139 (56.12%), Query Frame = -2
Query:  400 NINVAVQTENGLYVPVIRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAIINPPQSGILAVGSAEKRVVPGLGPDQYKFSSFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL 816
            +I VAV T++GL VP +RD DKK  + I  E+  LA KA++  L   D   G+FT+TN GG FG      IIN  Q+ IL + S   R +  +  D  +    M + LS DHR+IDG     +LK  K  IENPE +LL
Sbjct:  285 DIGVAVSTDDGLLVPFVRDCDKKNFAEIEAEIANLAVKAREKKLGLDDMVNGSFTITN-GGIFGSMMSTPIINGNQAAILGMHSIITRPI-AIDQDTIENRPMMYIALSYDHRIIDGKEAVGFLKTIKELIENPEDLLL 421          
The following BLAST results are available for this feature:
BLAST of DT214601 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
ODO2_DICDI1.954e-2140.91Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_BARQU1.954e-2140.97Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_BACSU1.954e-2138.73Dihydrolipoyllysine-residue succinyltransferase co... [more]
Y1564_DICDI3.334e-2150.93Pyruvate dehydrogenase complex subunit homolog DDB... [more]
ODO2_STAES4.354e-2141.61Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_STAEQ4.354e-2141.61Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_HAEIN1.267e-2040.29Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_STAAW2.161e-2042.45Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_STAAS2.161e-2042.45Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_STAAR2.161e-2042.45Dihydrolipoyllysine-residue succinyltransferase co... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06N13_f2 Parent Washington Navel Orange Red Scale-Infested Rind cDNA Library UCRCS11-2 Citrus sinensis cDNA clone CS_WEd0006c_G07_VN, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DT214601 ID=DT214601; Name=DT214601; organism=Citrus sinensis; type=EST; length=862bp
GTTGTTTCACACAACACTGGTAATTGGAAAATCCAAAAAATATATATAAA
TCAAATTATTACCCGCATGAAAGAGGCGATTACACTCTACTAAAATCATG
TTCATCACGTATGTAACCCAAAAATCCATTAAGGAAAGGTCGATAGCAGA
ACACCTTGTTGAACACCCTATCAAGGATGAGTATGAGTTTAAGGATTGGT
TTCATGCCTCGATCCCCTGCTTTTATTCCAAAAATTTTGCATAAAAGTGT
TTACCAATTGAAAAACAAAATCAAGATGTGCTCAGTGACACAACCATGCC
AATCTGATCCCAGGTGGAAGGGGTTGAACTGAAGCCCCCATCTAAACTGA
TACAGCTAGGAAAGAGCTTCTCAACTTAGAAAAAGAAGAGTTTGGCTTAT
AGCAACATGGACTCCGGATTCTCAATGTATCCTTTGAATGCTTTCAACCA
TTCAGCACCAATCGCACCATCTATTACGCGATGATCACAACTTAATGTTA
CCGACATGAAGGAAGAAAATTTGTACTGATCTGGACCCAAGCCAGGGACA
ACCCTTTTCTCAGCAGATCCAACTGCAAGAATGCCAGATTGAGGAGGATT
GATAATGGCACAGAATTGCTTGATGCCGAAGGGTCCTCCCAAATTGGTAA
CTGTGAATGTGCCTCCCTCATAATCTTGTGGTTTCAAGCTGTTGTCTTTG
GCTTTCTGGGCCAACTGTCTGACCTCTTCAGCAATTGTGGATAAGCCTTT
CTTGTCAGCATCCCTTATAACTGGGACATAAAGACCGTTTTCTGTCTGCA
CTGCTACATTAATATTCACATTCTTAAATTGTCGGATATATTCATCAGCC
CATGAACTATTG
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