DT214601

Overview
NameDT214601
Unique NameDT214601
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length862
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6531 contig Csv1_Contig6531:1..862. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DT214601 vs. ExPASy Swiss-Prot
Match: ODB2_BOVIN (Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial OS=Bos taurus GN=DBT PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 3.947e-14
Identity = 48/140 (34.29%), Postives = 76/140 (54.29%), Query Frame = -2
Query:  400 NINVAVQTENGLYVPVIRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAIINPPQSGILAVGSAEKRVVPGLG-PDQYKFSSFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL 816
            NI +A+ TE GL VP +++   + +  IA E+ +L +      L   D  GGTFT++N+G   G      +I PP+  I A+G+   + +P      +   +  M+V+ S DHR+IDGA  + +   +K Y+ENP  MLL
Sbjct:  343 NIGIAMDTEQGLIVPNVKNVQIRSIFEIATELNRLQKLGSAGQLSTNDLIGGTFTLSNIGS-IGGTYAKPVILPPEVAIGALGTI--KALPRFNEKGEVCKAQIMNVSWSADHRIIDGATVSRFSNLWKSYLENPAFMLL 479          
BLAST of DT214601 vs. ExPASy Swiss-Prot
Match: ODP2_MYCPN (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Mycoplasma pneumoniae GN=pdhC PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.959e-13
Identity = 45/121 (37.19%), Postives = 68/121 (56.20%), Query Frame = -2
Query:  463 KNVNINVAVQTENGLYVPVIRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAIINPPQSGILAVGSAEKRVVPGLGPDQYKFSSFMSVTLSCDHRVIDGA 825
            K+VN+ +AV T +GL VP I+ A  K +  IA+++  LA +A+   +K  D   GT +VTN G   G      II  P+  I+A G+ E+RVV   G       + + +T++ DHR +DGA
Sbjct:  263 KDVNVGIAVDTPDGLIVPNIKQAQTKSVVDIAKDIVDLANRARSKQIKLPDLSKGTISVTNFGS-LGAAFGTPIIKHPEMCIVATGNMEERVVRAEGG--VAVHTILPLTIAADHRWVDGA 380          
BLAST of DT214601 vs. ExPASy Swiss-Prot
Match: ODP2_BUCBP (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=aceF PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.723e-13
Identity = 44/132 (33.33%), Postives = 73/132 (55.30%), Query Frame = -2
Query:  433 KNVNINVAVQTENGLYVPVIRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDY-EGGTFTVTNLGGPFGIKQFCAIINPPQSGILAVGSAEKRVVPGLGPDQYKFSSFMSVTLSCDHRVIDGAIGAEWLKAFK 825
            +++NI + V T++GL VPVI   +KK +S+I+ ++R ++++A+   L   D  E G+FT++NLGG  G   F  II  P+  IL +  A   + P      +     + ++LS DHR IDG     ++   K
Sbjct:  271 EHINIGIVVDTDDGLLVPVINRVNKKNISSISNDLRIISERARSRKLNFSDIKEYGSFTISNLGG-IGGTNFTPIIKYPELAILGISRA--LIKPYWNSHAFIPKLMLPLSLSYDHRAIDGVAAVRFITFVK 399          
BLAST of DT214601 vs. ExPASy Swiss-Prot
Match: ODP2_MYCGE (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Mycoplasma genitalium GN=pdhC PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.270e-12
Identity = 43/120 (35.83%), Postives = 66/120 (55.00%), Query Frame = -2
Query:  463 NVNINVAVQTENGLYVPVIRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAIINPPQSGILAVGSAEKRVVPGLGPDQYKFSSFMSVTLSCDHRVIDGA 822
            ++N+ +AV TE GL VP I+ A  K +  IA+ +  LA KA+   +K  D   GT +VTN G   G      II  P+  I+A G+ E+R+V     +     + + +T++ DHR +DGA
Sbjct:  246 DINVGIAVDTEEGLIVPNIKQAQTKSVVEIAQAIVDLANKARTKKIKLTDLNKGTISVTNFGS-LGAAVGTPIIKYPEMCIVATGNLEERIVKV--ENGIAVHTILPLTIAADHRWVDGA 362          
The following BLAST results are available for this feature:
BLAST of DT214601 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
ODB2_BOVIN3.947e-1434.29Lipoamide acyltransferase component of branched-ch... [more]
ODP2_MYCPN1.959e-1337.19Dihydrolipoyllysine-residue acetyltransferase comp... [more]
ODP2_BUCBP9.723e-1333.33Dihydrolipoyllysine-residue acetyltransferase comp... [more]
ODP2_MYCGE1.270e-1235.83Dihydrolipoyllysine-residue acetyltransferase comp... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06N13_f2 Parent Washington Navel Orange Red Scale-Infested Rind cDNA Library UCRCS11-2 Citrus sinensis cDNA clone CS_WEd0006c_G07_VN, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DT214601 ID=DT214601; Name=DT214601; organism=Citrus sinensis; type=EST; length=862bp
GTTGTTTCACACAACACTGGTAATTGGAAAATCCAAAAAATATATATAAA
TCAAATTATTACCCGCATGAAAGAGGCGATTACACTCTACTAAAATCATG
TTCATCACGTATGTAACCCAAAAATCCATTAAGGAAAGGTCGATAGCAGA
ACACCTTGTTGAACACCCTATCAAGGATGAGTATGAGTTTAAGGATTGGT
TTCATGCCTCGATCCCCTGCTTTTATTCCAAAAATTTTGCATAAAAGTGT
TTACCAATTGAAAAACAAAATCAAGATGTGCTCAGTGACACAACCATGCC
AATCTGATCCCAGGTGGAAGGGGTTGAACTGAAGCCCCCATCTAAACTGA
TACAGCTAGGAAAGAGCTTCTCAACTTAGAAAAAGAAGAGTTTGGCTTAT
AGCAACATGGACTCCGGATTCTCAATGTATCCTTTGAATGCTTTCAACCA
TTCAGCACCAATCGCACCATCTATTACGCGATGATCACAACTTAATGTTA
CCGACATGAAGGAAGAAAATTTGTACTGATCTGGACCCAAGCCAGGGACA
ACCCTTTTCTCAGCAGATCCAACTGCAAGAATGCCAGATTGAGGAGGATT
GATAATGGCACAGAATTGCTTGATGCCGAAGGGTCCTCCCAAATTGGTAA
CTGTGAATGTGCCTCCCTCATAATCTTGTGGTTTCAAGCTGTTGTCTTTG
GCTTTCTGGGCCAACTGTCTGACCTCTTCAGCAATTGTGGATAAGCCTTT
CTTGTCAGCATCCCTTATAACTGGGACATAAAGACCGTTTTCTGTCTGCA
CTGCTACATTAATATTCACATTCTTAAATTGTCGGATATATTCATCAGCC
CATGAACTATTG
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